BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489944
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11060.1 | Symbols: MTSSB | mitochondrially targeted single-... 1406 0.0
> AT4G11060.1 | Symbols: MTSSB | mitochondrially targeted single-stranded
DNA binding protein | chr4:6754587-6756532 REVERSE
LENGTH=1004
Length=1004
Score = 1406 bits (761), Expect = 0.0
Identities = 886/945 (94%), Gaps = 13/945 (1%)
Strand=Plus/Plus
Query 1 GTTCACATCGTTTTCGTTTTGTCCCC-AAACCCTAAAAAGCTTCAACGCAGGGTTTAACG 59
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1 GTTCACATCGTTTTCGTTTTGTCCCCAAAACCCTAAAAATCTTCAACGCAGGGTTTAACG 60
Query 60 AATCAAAGCTCTTCGACGTCG-TTT--TCTTCTTCTTCTTCCTCTCTGTGTTTCGTTCCC 116
||||||| ||| |||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct 61 AATCAAACCTCAACGACGTCGTTTTACTCTTCTTCTTCTTCCTCTCTGTGTTGCGTTCCC 120
Query 117 TCTTTCACAAAACTCACTGACATCACATCCTCAGAATCGTCCCAGAATGAACTCACTCGC 176
|||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 121 TCTTTCAC-AAACTCACTGACATCACATCCTTAGAGTCGTCCCAGAATGAACTCACTCGC 179
Query 177 CATTAGAGTCTCCAAGGTTCTCAGATCTTCTTCGATATCTCCTTTAGCAATAAGTGCTGA 236
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 180 CATTAGAGTCTCCAAGGTTCTCAGATCCTCTTCAATATCTCCTTTAGCAATAAGTGCTGA 239
Query 237 GAGAGGCTCTAAGTCGTGGTTCTCGACTGGTCCGATTGATGAAGGTGTAGAAGAAGAGTT 296
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||
Sbjct 240 GAGAGGCTCTAAGTCGTGGTTCTCTACTGGTCCTATCGATGAAGGTGTAGAAGAAGATTT 299
Query 297 TGAAG-AAATCGTTTCGGAGAGACCTGAGCTTCAACCTCATGGAGTTGATCCTCGTAAAG 355
||||| |||| ||| | || || |||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAAGAAAAT-GTTACAGAAAGGCCTGAGCTTCAACCTCATGGAGTTGATCCTCGTAAAG 358
Query 356 GTTGGGGATTTCGCGGTGTCCATAGGGCGATAATTTGTGGGAAAGTAGGGCAAGCACCAT 415
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 359 GTTGGGGATTTCGCGGTGTTCATAGGGCGATTATTTGTGGGAAAGTAGGGCAAGCACCGT 418
Query 416 TACAGAAGATTTTAAGGAACGGGCGAACAGTAACGATATTTACAGTAGGAACAGGCGGCA 475
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 419 TACAGAAGATCTTAAGGAACGGGCGGACAGTAACGATCTTTACAGTAGGAACAGGTGGGA 478
Query 476 TGTTTGATCAGAGGCTTGTTGGAGCAACCAATCAGCCAAAACCAGCTCAGTGGCATAGAA 535
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 479 TGTTTGATCAGAGGCTTGTAGGAGCTACTAATCAGCCAAAACCAGCTCAGTGGCATAGAA 538
Query 536 TTGCAGTGCATAACGAAGTGCTTGGCTCTTACGCTGTCCAAAAACTCGCTAAAAACTCAT 595
| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TCGCTGTGCACAACGAAGTGCTTGGCTCTTACGCTGTCCAAAAACTCGCTAAAAACTCGT 598
Query 596 CGGTTTATGTGGAAGGTGATATTGAGACTAGAGTGTATAATGATAGCATCAGCAGTGAAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CGGTTTATGTGGAAGGTGATATTGAGACTAGAGTGTATAATGATAGCATCAGCAGTGAAG 658
Query 656 TGAAGAGTATCCCTGAGATTTGCGTTCGTCGTGATGGGAAGATTCGGCTGATCAAATATG 715
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 659 TGAAGAGTATCCCTGAGATTTGCGTTCGTCGTGATGGTAAGATTCGGATGATCAAATATG 718
Query 716 GTGAAAGCATTAGCAAAATCTCTTTCGATGAGCTAAAAGAAGGATTGATTTAGTCGGAGC 775
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 GTGAAAGCATTAGCAAAATCTCTTTTGATGAGCTAAAAGAAGGATTGATTTAGTCGGAGC 778
Query 776 AAGAATATTCCCGGTGGCCGGAGGAGAGCAAACTGAATCAAT-GTTTTTCTGAGTAAAAT 834
||||||||||| |||| ||||| ||||||||||||||| || |||||||||||||||||
Sbjct 779 AAGAATATTCC-GGTGACCGGATGAGAGCAAACTGAATAAAACGTTTTTCTGAGTAAAAT 837
Query 835 CAATAAAACAGTTTGtttttttGTTCTGTCCATTGCGACTTTGTAAGCATTGAGTTCCTT 894
| ||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 838 CGATAAAACAGTTTGGTTTTTTGTTCTGTCCATTGCGACTTTGTGAGCACTGAGTTCCTT 897
Query 895 TTTATGGATATC-GGGGGCAT-T--ATGTAGTTTCTGGTCAAAAT 935
|| ||||||| | |||||||| | |||||||||||||||| |||
Sbjct 898 TTAATGGATACCAGGGGGCATATTTATGTAGTTTCTGGTCAGAAT 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48124312826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5