BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489944 Length=983 Score E Sequences producing significant alignments: (Bits) Value AT4G11060.1 | Symbols: MTSSB | mitochondrially targeted single-... 1406 0.0 > AT4G11060.1 | Symbols: MTSSB | mitochondrially targeted single-stranded DNA binding protein | chr4:6754587-6756532 REVERSE LENGTH=1004 Length=1004 Score = 1406 bits (761), Expect = 0.0 Identities = 886/945 (94%), Gaps = 13/945 (1%) Strand=Plus/Plus Query 1 GTTCACATCGTTTTCGTTTTGTCCCC-AAACCCTAAAAAGCTTCAACGCAGGGTTTAACG 59 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 1 GTTCACATCGTTTTCGTTTTGTCCCCAAAACCCTAAAAATCTTCAACGCAGGGTTTAACG 60 Query 60 AATCAAAGCTCTTCGACGTCG-TTT--TCTTCTTCTTCTTCCTCTCTGTGTTTCGTTCCC 116 ||||||| ||| |||||||| ||| ||||||||||||||||||||||||| ||||||| Sbjct 61 AATCAAACCTCAACGACGTCGTTTTACTCTTCTTCTTCTTCCTCTCTGTGTTGCGTTCCC 120 Query 117 TCTTTCACAAAACTCACTGACATCACATCCTCAGAATCGTCCCAGAATGAACTCACTCGC 176 |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 121 TCTTTCAC-AAACTCACTGACATCACATCCTTAGAGTCGTCCCAGAATGAACTCACTCGC 179 Query 177 CATTAGAGTCTCCAAGGTTCTCAGATCTTCTTCGATATCTCCTTTAGCAATAAGTGCTGA 236 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 180 CATTAGAGTCTCCAAGGTTCTCAGATCCTCTTCAATATCTCCTTTAGCAATAAGTGCTGA 239 Query 237 GAGAGGCTCTAAGTCGTGGTTCTCGACTGGTCCGATTGATGAAGGTGTAGAAGAAGAGTT 296 |||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || Sbjct 240 GAGAGGCTCTAAGTCGTGGTTCTCTACTGGTCCTATCGATGAAGGTGTAGAAGAAGATTT 299 Query 297 TGAAG-AAATCGTTTCGGAGAGACCTGAGCTTCAACCTCATGGAGTTGATCCTCGTAAAG 355 ||||| |||| ||| | || || ||||||||||||||||||||||||||||||||||||| Sbjct 300 TGAAGAAAAT-GTTACAGAAAGGCCTGAGCTTCAACCTCATGGAGTTGATCCTCGTAAAG 358 Query 356 GTTGGGGATTTCGCGGTGTCCATAGGGCGATAATTTGTGGGAAAGTAGGGCAAGCACCAT 415 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | Sbjct 359 GTTGGGGATTTCGCGGTGTTCATAGGGCGATTATTTGTGGGAAAGTAGGGCAAGCACCGT 418 Query 416 TACAGAAGATTTTAAGGAACGGGCGAACAGTAACGATATTTACAGTAGGAACAGGCGGCA 475 |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || | Sbjct 419 TACAGAAGATCTTAAGGAACGGGCGGACAGTAACGATCTTTACAGTAGGAACAGGTGGGA 478 Query 476 TGTTTGATCAGAGGCTTGTTGGAGCAACCAATCAGCCAAAACCAGCTCAGTGGCATAGAA 535 ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| Sbjct 479 TGTTTGATCAGAGGCTTGTAGGAGCTACTAATCAGCCAAAACCAGCTCAGTGGCATAGAA 538 Query 536 TTGCAGTGCATAACGAAGTGCTTGGCTCTTACGCTGTCCAAAAACTCGCTAAAAACTCAT 595 | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 539 TCGCTGTGCACAACGAAGTGCTTGGCTCTTACGCTGTCCAAAAACTCGCTAAAAACTCGT 598 Query 596 CGGTTTATGTGGAAGGTGATATTGAGACTAGAGTGTATAATGATAGCATCAGCAGTGAAG 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CGGTTTATGTGGAAGGTGATATTGAGACTAGAGTGTATAATGATAGCATCAGCAGTGAAG 658 Query 656 TGAAGAGTATCCCTGAGATTTGCGTTCGTCGTGATGGGAAGATTCGGCTGATCAAATATG 715 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 659 TGAAGAGTATCCCTGAGATTTGCGTTCGTCGTGATGGTAAGATTCGGATGATCAAATATG 718 Query 716 GTGAAAGCATTAGCAAAATCTCTTTCGATGAGCTAAAAGAAGGATTGATTTAGTCGGAGC 775 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 719 GTGAAAGCATTAGCAAAATCTCTTTTGATGAGCTAAAAGAAGGATTGATTTAGTCGGAGC 778 Query 776 AAGAATATTCCCGGTGGCCGGAGGAGAGCAAACTGAATCAAT-GTTTTTCTGAGTAAAAT 834 ||||||||||| |||| ||||| ||||||||||||||| || ||||||||||||||||| Sbjct 779 AAGAATATTCC-GGTGACCGGATGAGAGCAAACTGAATAAAACGTTTTTCTGAGTAAAAT 837 Query 835 CAATAAAACAGTTTGtttttttGTTCTGTCCATTGCGACTTTGTAAGCATTGAGTTCCTT 894 | ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| Sbjct 838 CGATAAAACAGTTTGGTTTTTTGTTCTGTCCATTGCGACTTTGTGAGCACTGAGTTCCTT 897 Query 895 TTTATGGATATC-GGGGGCAT-T--ATGTAGTTTCTGGTCAAAAT 935 || ||||||| | |||||||| | |||||||||||||||| ||| Sbjct 898 TTAATGGATACCAGGGGGCATATTTATGTAGTTTCTGGTCAGAAT 942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48124312826 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5