BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489946
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11070.1 | Symbols: WRKY41, AtWRKY41 | WRKY family transcrip... 1175 0.0
> AT4G11070.1 | Symbols: WRKY41, AtWRKY41 | WRKY family transcription
factor | chr4:6759303-6760794 FORWARD LENGTH=973
Length=973
Score = 1175 bits (636), Expect = 0.0
Identities = 879/990 (89%), Gaps = 41/990 (4%)
Strand=Plus/Plus
Query 1 ATGGAAATGATGAATTGGGAGCAGAGAAATTTGCTAAACGAGCTGATTCATGGACTAAAA 60
|||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAAATGATGAATTGGGAGCGGAGGAGTTTGCTAAACGAGCTAATTCATGGACTAAAA 60
Query 61 GCGGCAAAGCAGCTTCAGGCTTCGCCTTCGCC-T--TCG-C--CATCAACTTCATCTTTG 114
||||| ||||||||||||| |||| |||| || | | | | | || |||||| ||||
Sbjct 61 GCGGCCAAGCAGCTTCAGGGTTCGTCTTCTCCATCGTTGTCAGCTTCTTCTTCATATTTG 120
Query 115 ACGATGGAGATGAAGGAGACTCTCTTACATAACATAGTTTCTTCCTTCGAGAAAGCTATT 174
|||| |||||| ||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 121 ACGACGGAGATAAAGGAGAATCTCTTACATAACATAGTTTCTTCCTTCAAAAAAGCTATT 180
Query 175 TTGATGCTAAACGGATCCACCACACAACACATTCCAACGACGGAGCTTGCG-CTGGATCT 233
|||||||| |||||||||||||||||||||| |||||||| ||||||||| || ||||
Sbjct 181 TTGATGCTCAACGGATCCACCACACAACACAATCCAACGATAGAGCTTGCGCCT-GATCC 239
Query 234 CCTAGCTAATCCCGGTAAGGTTCCAGAATCTCCAACATCGATCACCGGAAGTCCGAGAAG 293
||||||| ||||||| |||||||||| ||||||| ||||||||||||||| |||||||||
Sbjct 240 CCTAGCTCATCCCGGAAAGGTTCCAGGATCTCCAGCATCGATCACCGGAAATCCGAGAAG 299
Query 294 CGAAGAGTTTTTCGATGTGGGATCGAAAG-ATTGCAACTTAAGTTCTAAAAAGAGGAAGA 352
||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct 300 CGAAGAGTTTTTCAATGTAAGATCGAAAGAATT-CAACTTAAGTTCTAAAAAGAGGAAGA 358
Query 353 TGTTGCCAAAGTGGACAGAGCAAGTAAGAATTAGTCCAGAGAGAGGCTTAGAAGGACCTC 412
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 359 TGTTGCCAAAGTGGACAGAGCAAGTGAGAATTAGCCCAGAGAGAGGCTTAGAAGGACCTC 418
Query 413 ATGATGATGTCTTCAGCTGGAGAAAATATGGCCAAAAAGACATTTTAGGCGCCAAATATC 472
|||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 419 ATGACGATATCTTCAGCTGGAGAAAATATGGCCAGAAAGACATTTTGGGCGCCAAAT-TC 477
Query 473 C-AAGGAGTTATTACAGATGCACATTTCGTAACACACAGTACTGTTGGGCTACAAAACAA 531
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 CCAAGGAGTTATTACAGATGCACATTTCGTAACACACAGTACTGTTGGGCTACGAAACAA 537
Query 532 GTCCAAAGATCGGACAGTGATCCTACGATCTTCGAAGTAACATACAGAGGAATACACACT 591
||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 538 GTCCAAAGATCGGACGGTGATCCAACGATCTTCGAAGTAACATACAGAGGAACACACACT 597
Query 592 TGTTCACAGGGGATCCCACCTCCAAA-AATACAAGAAACTAAACCAAACCATACAGTAGC 650
||||||||||||||||||| |||| | || || |||||| |||||||| || ||||||||
Sbjct 598 TGTTCACAGGGGATCCCACTTCCAGAGAA-ACGAGAAACCAAACCAAAACACACAGTAGC 656
Query 651 TGTAAATTACCAAAATAACGTCGACAATCTCAGGACCAATCTCACCGTACGTACCAACGG 710
||||||||||| | | | ||||||| ||| ||| |||||||||||| |||
Sbjct 657 AGTAAATTACCA-------G---A-A-TCTCAGGGCCAGTCTTACCGTACGTACCGGCGG 704
Query 711 ACTTG-AAGCCGACA-CTTTCTCATTCCCTGTTACGTCGCCGTTTTACACTTACGAGTCC 768
||||| |||| || | ||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 705 ACTTGGAAGC-GA-AGCTTTCTCATTCCCCGTCACGTCGCCGTTATACACTTACGAGTCC 762
Query 769 ATCAACGGTGG---AACGTTATGCCAC---GTGGGAAGCTCTGCTCCGTCAGATTTCACA 822
||||||||||| |||||| | |||| |||||||| |||| |||||| ||||||||
Sbjct 763 ATCAACGGTGGTGGAACGTTTTACCACCACGTGGGAAGTTCTGGTCCGTCGGATTTCACT 822
Query 823 GGATTGATCTCTACTAATACCTCCACAGGAAGTTCTCCAATCTTCGACGTTGATTTTCA- 881
||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 823 GGATTGATCTCAACAAATACTTCCACAGGAAGTTCTCCAATCTTCGACGTTAATTTTCAA 882
Query 882 TTTCGATCCAACGGCTGAGATTAACACAGGCTTCCCCACCTTTTTACACAATTCGATTTA 941
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 883 TTT-GATCCAACGGCTGAGATTAACACAGGCTTCCCCACTTTTTTCCACAATTCGATTTA 941
Query 942 ACTA--A-AGTACTGAATATTCTTGAGATT 968
| || | |||| |||||||||||||||||
Sbjct 942 AGTAGTACAGTATTGAATATTCTTGAGATT 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5