BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489947
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11080.1 | Symbols: | HMG (high mobility group) box protein... 1808 0.0
AT4G23800.1 | Symbols: | HMG (high mobility group) box protein... 966 0.0
> AT4G11080.1 | Symbols: | HMG (high mobility group) box protein
| chr4:6760867-6763272 REVERSE LENGTH=1372
Length=1372
Score = 1808 bits (979), Expect = 0.0
Identities = 1259/1386 (91%), Gaps = 52/1386 (4%)
Strand=Plus/Plus
Query 1 ATGGCGACAGTTTCCTCAGATCCTGCTCCGGCGAAGAAATCGAGAAACAGTAGAAAAGCG 60
||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGACAGTTTCTTCAGATCCTGCTCATGCGAAGAAATCGAGAAACAGTAGAAAAGCG 60
Query 61 TTGAAGGAAAAGAATGAGATCGTCGAGAGTCATCACCATTGTTGTCACCAATCTCA-ACC 119
|| ||| ||||||||||||||||| ||||||||||| | | ||||| | |
Sbjct 61 TTAAAGCAAAAGAATGAGATCGTC--GAGTCATCACC---G--G-------TCTCAGA-C 105
Query 120 AAGGGGAAAGAAACGAAATCCAATGTTGGAG-AAGA--TGA---AGAT-----CGA-GAA 167
||||||||||||||||| | | ||| ||| |||| ||| |||| ||| |
Sbjct 106 AAGGGGAAAGAAACGAAGT-C---GTTTGAGAAAGATCTGATGGAGATGCAAGCGATGTT 161
Query 168 GGATAAAACTGAGGATTTGCTgaaggagaaggac-ga-ga--tcctgaagaagaaggaag 223
||| || | ||| || | | ||||||||| || || || | ||||| ||||||| |
Sbjct 162 GGAGAAGA-TGAAGA-TCG-AGAAGGAGAA-AACTGAGGATTTGTTGAAGGAGAAGGACG 217
Query 224 aagaactcga-gacgaaggacgtggaacaggagaaACTTAAGACGGAGTTGAAAAAACTG 282
||| || || || |||||| || |||||||| ||||||||||||||| |||| ||||||
Sbjct 218 -AGATCTTGAGGAAGAAGGAAGTTGAACAGGAAAAACTTAAGACGGAGCTGAAGAAACTG 276
Query 283 CAGAAGATGAAAGAATTCAAGCCTAACATGAGTTTTGCGTTTACTCAATCTTTGGCACAA 342
||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct 277 CAGAAGATGAAGGAATTCAAGCCTAACATGACTTTTGCTTTTAGTCAATCTTTGGCACAA 336
Query 343 ACTgaagaagataagaaggggaagaagaagaagaagGATTGTGTTGAAACAAAGAGACCA 402
||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 337 ACTGAAGAAGAAAAGAAGGGAAAGAAGAAGAAGAAGGATTGTGCTGAAACAAAGAGACCA 396
Query 403 TCAACACCATATATTTTGTGGTGTAAGGATAATTGGAACGAAGTGAAGAAGCAGAATCCT 462
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 397 TCAACACCATATATTTTGTGGTGTAAGGATAATTGGAACGAAGTGAAGAAACAGAATCCT 456
Query 463 GAAGCTGATTTCAAGGAGACTTCGAATATTCTTGGTGCTAAGTGGA-GG--ACTCTGAGT 519
|||||||||||||||||||||||||| ||||| ||||||||||||| || | | | |||
Sbjct 457 GAAGCTGATTTCAAGGAGACTTCGAACATTCTGGGTGCTAAGTGGAAGGGGA-T-T-AGT 513
Query 520 G-TAGAAGAGAAGAAGTTTTATGAGGAGAAGTATCAGGTTGATAAGGAAGCTTATCTTCA 578
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 514 GCT-GAAGAGAAGAAGCCTTATGAGGAGAAGTATCAGGCGGATAAGGAAGCTTATCTTCA 572
Query 579 GGTTATTACAAAGGAGAAGCGCGAAAGGGAAGCTATGAAGCTTCTTGATGATGAACAGAA 638
||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 573 GGTTATTACAAAGGAGAAGCGTGAGAGGGAAGCAATGAAGCTTCTTGATGATGAGCAGAA 632
Query 639 GCAGAAAACTGCTATGGAATTGCTTGATCAGTATCTTCACTTTGTTCAGGAAGCTGAACA 698
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GCAGAAAACTGCAATGGAATTGCTTGATCAGTATCTTCACTTTGTTCAGGAAGCTGAACA 692
Query 699 AGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCTAAACATCCAATATC 758
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 693 TGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCTAAACAACCAATATC 752
Query 759 TGCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGT 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TGCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGT 812
Query 819 TATTGAGGTCGCAAAGATGACTGGAGAAGAGTGGAAGAATTTATCGGAAGAACAAAAGGC 878
|||||||||||| |||||| ||||||||||||||||||| || ||||||||| |||||||
Sbjct 813 TATTGAGGTCGCTAAGATGGCTGGAGAAGAGTGGAAGAACTTGTCGGAAGAAAAAAAGGC 872
Query 879 TCCTTATGATCAGATGGC-AAAGAAGAACAAGGAGATATACCTGCaagaaatggaaggat 937
|||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct 873 TCCTTATGATCAGATGGCGAAA-AAGAACAAGGAGATATATCTGCAAGAAATGGAAGGAT 931
Query 938 ataaaataacaaaggaagaagaaaccatgagccagaagaaagaagaagaagaactcatga 997
|||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||||
Sbjct 932 ATAAAAGAACAAAGGAAGAAGAAGCAATGAGCCAGAAGAAAGAAGAAGAAGAATTCATGA 991
Query 998 aactccataaacaagaagCTCTTCAACTTCTCaagaagaaggaaaaaaccgacaatatca 1057
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 992 AACTCCATAAACAAGAAGCTCTCCAACTTCTCAAGAAGAAGGAGAAAACCGACAATATCA 1051
Query 1058 taaagaagacgaaagagacgaccaagaacaagaagaagaacgagaaTGTTGATCCTAACA 1117
|||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 1052 TAAAGAAGACGAAAGAGACGGCGAAGAACAAGAAAAAGAACGAGAATGTTGATCCTAACA 1111
Query 1118 AACCCAAAAAGCCTGCTTCTTCATACTTTCTCTTCTGCAAAGAAGCAAGAAAGAGTGTGT 1177
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1112 AACCCAAAAAGCCTACTTCTTCATACTTTCTCTTCTGCAAAGACGCAAGAAAGAGTGTGT 1171
Query 1178 TAGAAGAACATCCTGGGATCAACAACTCAACTGTTACCGCCCACATTTCATTGAAATGGA 1237
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1172 TAGAAGAACATCCTGGGATCAACAACTCAACTGTTACTGCTCACATTTCATTGAAATGGA 1231
Query 1238 AGGAACTTGGTGAAGAAGAGAAACAAGTTTACAATGGCAAAGCTGCTGAGTTAATGGAAG 1297
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1232 TGGAACTTGGTGAAGAGGAGAAACAAGTTTACAATAGCAAAGCTGCTGAGTTAATGGAAG 1291
Query 1298 CTTATAAGAGAGAAGTGGAAGAGTACAATAAGACCAAGACGTCGTCGTAGAGAAAGAAAA 1357
|||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1292 CTTACAAGAAAGAAGTGGAAGAGTACAATAAGACCAAGACTTCGTCGTAGAGAAAGAAAA 1351
Query 1358 ATGAGA 1363
|| |||
Sbjct 1352 ATTAGA 1357
> AT4G23800.1 | Symbols: | HMG (high mobility group) box protein
| chr4:12390167-12392710 FORWARD LENGTH=1626
Length=1626
Score = 966 bits (523), Expect = 0.0
Identities = 999/1221 (82%), Gaps = 63/1221 (5%)
Strand=Plus/Plus
Query 140 CAATGTTGGAGAAGATGAAGATCGAGAAGGATAAAACTGAGGATTTGCTgaaggagaagg 199
|||||||||||||||||||||||||||||||||| || ||||| || || ||||||||||
Sbjct 219 CAATGTTGGAGAAGATGAAGATCGAGAAGGATAAGACGGAGGAGTTACTTAAGGAGAAGG 278
Query 200 acgagatcctgaagaa-gaaggaagaagaactcgagacga-aggacg-tggaacaggaga 256
| ||||| |||| ||| |||||| || || || ||||| | || ||| || | |||||||
Sbjct 279 ATGAGATTCTGA-GAAAGAAGGAGGAGGAGCTAGAGACCAGAG-ACGCTG-AGCAGGAGA 335
Query 257 aACTTAAGACGGAGTTGAAAAAACTGCAGAAGATGAAAGAATTCAAGCCTAACATGAGTT 316
| || ||| |||| |||| || || ||||||||||| |||||||| |||||||||| ||
Sbjct 336 AGCTCAAGGTGGAGCTGAAGAAGCTTCAGAAGATGAAGGAATTCAAACCTAACATGACTT 395
Query 317 TTGCGTTTAC--TCAATCTT-TGGCACAAA--CTgaag-aagataagaaggggaagaaga 370
|||| || | ||| || | | |||| | |||| | |||| ||| | |||||||
Sbjct 396 TTGC-TTG-CGGTCAGTCATCTCTCACACAGGCTGA-GCAAGAAAAGGCGAATAAGAAGA 452
Query 371 agaagaagGATTGTGTTGAAACAAAGAGACCATCAACAC-CATATATTTTGTGGTGTAAG 429
|||| ||||||||| ||| |||||| ||||||| | | |||| |||||||||||||
Sbjct 453 AGAAAAAGGATTGTCCTGAGACAAAGCGACCATCGTC-CTCATACGTTTTGTGGTGTAAA 511
Query 430 GAT-AATTGGAAC-GAAGTGAAGAAGCAGAATCCTGAAGCTGATTTCAAGGAGACTTCGA 487
||| ||| ||| | ||||| |||||| | || ||||| ||||| ||||||||||||||||
Sbjct 512 GATCAAT-GGA-CTGAAGTCAAGAAGGAAAACCCTGAGGCTGACTTCAAGGAGACTTCGA 569
Query 488 ATATTCTTGGTGCTAAGTGGAGGACTCTGAGTGTAGAAGAGAAGAAGTTTTATGAGGAGA 547
| ||||| || ||||| |||| | |||| |||| |||||| |||||| ||| ||||| |
Sbjct 570 ACATTCTGGGGGCTAAATGGAAGTCTCTTAGTGCAGAAGATAAGAAGCCTTACGAGGA-A 628
Query 548 AG-TATCAGGTTGATAAGGAAGCTTATCTTCAGGTTATTACAAAGGAGAAGCGCGA-AAG 605
|| || |||||||| || |||||||| || ||||| ||| | |||||||||||||| |||
Sbjct 629 AGGTACCAGGTTGAGAAAGAAGCTTACCTCCAGGTCATTGCTAAGGAGAAGCGCGAGAAG 688
Query 606 GGAAGCTATGAAGCTTCTTGATGATGAACAGAAGCAGAAAACTGCTATGGAATTGCTTGA 665
| | || ||||||||||| || ||||| |||||||||| |||||| ||||||||||||||
Sbjct 689 G-AGGCCATGAAGCTTCTGGAGGATGACCAGAAGCAGAGAACTGCAATGGAATTGCTTGA 747
Query 666 TCAGTATCTTCA-CTTTGTTCAGGAAGCTGAACAAGACAACAAGAAAAAGGCCAAGAAG- 723
||||||||| || |||||| |||||||||||||| ||||||||||| ||| |||||||
Sbjct 748 TCAGTATCT-CAACTTTGTCCAGGAAGCTGAACAGGACAACAAGAAGAAGAACAAGAAGG 806
Query 724 ATAAAGGATCCC-CTGAAGCCTAAACATCCAATATCTGC-TTACCT-GATCTATGCAAAC 780
| || ||| ||| |||||||| |||||||| ||||||| || ||| | | |||||||||
Sbjct 807 AGAA-GGA-CCCTCTGAAGCCAAAACATCCCGTATCTGCCTT-CCTTGTT-TATGCAAAC 862
Query 781 GAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGTTATTGAGGTCGCAAAGATGACT 840
|||||||||||||||||| | ||||||||||||||| | |||||||||||||| |||
Sbjct 863 GAGAGGAGAGCTGCTTTACGCGAAGAAAACAAAAGCGTCGTGGAGGTCGCAAAGATCACT 922
Query 841 GGAGAAGAGTGGAAGAATTTATCGGA-A-GAACAAAAGGCTCCTTATGATCAGATGGCAA 898
||||| ||||||||||| || || || | ||| ||| ||| || || || || ||||||
Sbjct 923 GGAGAGGAGTGGAAGAACTTGTCAGACAAGAA-AAA-GGCACCCTACGAGAAGGTGGCAA 980
Query 899 AGAAGAACAAGGAGATATACCTGCaagaaatggaaggatataaaata--acaaaggaaga 956
||||||||||||||| ||||||||||| |||||| ||| ||| || | |||||||||||
Sbjct 981 AGAAGAACAAGGAGACATACCTGCAAGCAATGGA-GGA-ATACAAGAGGACAAAGGAAGA 1038
Query 957 agaaaccatgagccagaagaaagaagaagaagaactcatgaaactccataaacaagaagC 1016
|||| || |||| ||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 1039 AGAAGCCCTGAGTCAGAAGAAAGAAGAAGAGGAACTCTTGAAACTCCACAAACAAGAAGC 1098
Query 1017 TCTTCAACTTCTCaagaagaaggaaaaaaccgacaatatcataaagaag-acgaaagaga 1075
||||||| | || ||||||||||| ||||| || ||| | || |||||| | ||| | |
Sbjct 1099 TCTTCAAATGCTTAAGAAGAAGGAGAAAACTGATAATCTGATCAAGAAGGA-GAA-G-G- 1154
Query 1076 cgaccaagaacaagaagaagaacgagaaTGTTGATCCTAACAAACCCAAA-AAGCCTGCT 1134
|||||||||| |||||||||||| || ||||| ||||||||||| ||| |||||||||
Sbjct 1155 CGACCAAGAA---GAAGAAGAACGAAAACGTTGACCCTAACAAACC-AAAGAAGCCTGCT 1210
Query 1135 TCTTCATACTTTCTCTTCTGCAAAGAAGCAAGAAAGAG-TGTGTTAGAAGAACATCCTGG 1193
|||||||||||||||||| |||| || | ||| |||| | || |||||||| ||| ||
Sbjct 1211 TCTTCATACTTTCTCTTCAGCAAGGACGAAAGGAAGAAAT-TGACAGAAGAACGTCCCGG 1269
Query 1194 GATCAA-CAACTCAACTGTTACCGCCCACATTTCATTGAAATGGAAGGAACTTG-GTGAA 1251
|| ||| |||| | |||||||| || | ||||||| |||||||||||||| ||| |||||
Sbjct 1270 GA-CAAACAACGCTACTGTTACTGCTCTCATTTCACTGAAATGGAAGGAA-TTGAGTGAA 1327
Query 1252 GAAGAGAAACAAGTTTACAATGGCAAAG-CTGCTGAGTTAATGGAAGCTTATAAGAGAG- 1309
|||||||| ||||||||||| || |||| | || | | |||||||| || || | ||
Sbjct 1328 GAAGAGAAGCAAGTTTACAACGG-AAAGGCCGCAAAACTGATGGAAGCATACAAAA-AGG 1385
Query 1310 AAGTGGAAGAGTACAATAAGA 1330
||||||||| ||||| ||||
Sbjct 1386 AAGTGGAAGCTTACAACAAGA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5