BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489947 Length=1363 Score E Sequences producing significant alignments: (Bits) Value AT4G11080.1 | Symbols: | HMG (high mobility group) box protein... 1808 0.0 AT4G23800.1 | Symbols: | HMG (high mobility group) box protein... 966 0.0 > AT4G11080.1 | Symbols: | HMG (high mobility group) box protein | chr4:6760867-6763272 REVERSE LENGTH=1372 Length=1372 Score = 1808 bits (979), Expect = 0.0 Identities = 1259/1386 (91%), Gaps = 52/1386 (4%) Strand=Plus/Plus Query 1 ATGGCGACAGTTTCCTCAGATCCTGCTCCGGCGAAGAAATCGAGAAACAGTAGAAAAGCG 60 ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGTCGACAGTTTCTTCAGATCCTGCTCATGCGAAGAAATCGAGAAACAGTAGAAAAGCG 60 Query 61 TTGAAGGAAAAGAATGAGATCGTCGAGAGTCATCACCATTGTTGTCACCAATCTCA-ACC 119 || ||| ||||||||||||||||| ||||||||||| | | ||||| | | Sbjct 61 TTAAAGCAAAAGAATGAGATCGTC--GAGTCATCACC---G--G-------TCTCAGA-C 105 Query 120 AAGGGGAAAGAAACGAAATCCAATGTTGGAG-AAGA--TGA---AGAT-----CGA-GAA 167 ||||||||||||||||| | | ||| ||| |||| ||| |||| ||| | Sbjct 106 AAGGGGAAAGAAACGAAGT-C---GTTTGAGAAAGATCTGATGGAGATGCAAGCGATGTT 161 Query 168 GGATAAAACTGAGGATTTGCTgaaggagaaggac-ga-ga--tcctgaagaagaaggaag 223 ||| || | ||| || | | ||||||||| || || || | ||||| ||||||| | Sbjct 162 GGAGAAGA-TGAAGA-TCG-AGAAGGAGAA-AACTGAGGATTTGTTGAAGGAGAAGGACG 217 Query 224 aagaactcga-gacgaaggacgtggaacaggagaaACTTAAGACGGAGTTGAAAAAACTG 282 ||| || || || |||||| || |||||||| ||||||||||||||| |||| |||||| Sbjct 218 -AGATCTTGAGGAAGAAGGAAGTTGAACAGGAAAAACTTAAGACGGAGCTGAAGAAACTG 276 Query 283 CAGAAGATGAAAGAATTCAAGCCTAACATGAGTTTTGCGTTTACTCAATCTTTGGCACAA 342 ||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||| Sbjct 277 CAGAAGATGAAGGAATTCAAGCCTAACATGACTTTTGCTTTTAGTCAATCTTTGGCACAA 336 Query 343 ACTgaagaagataagaaggggaagaagaagaagaagGATTGTGTTGAAACAAAGAGACCA 402 ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 337 ACTGAAGAAGAAAAGAAGGGAAAGAAGAAGAAGAAGGATTGTGCTGAAACAAAGAGACCA 396 Query 403 TCAACACCATATATTTTGTGGTGTAAGGATAATTGGAACGAAGTGAAGAAGCAGAATCCT 462 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 397 TCAACACCATATATTTTGTGGTGTAAGGATAATTGGAACGAAGTGAAGAAACAGAATCCT 456 Query 463 GAAGCTGATTTCAAGGAGACTTCGAATATTCTTGGTGCTAAGTGGA-GG--ACTCTGAGT 519 |||||||||||||||||||||||||| ||||| ||||||||||||| || | | | ||| Sbjct 457 GAAGCTGATTTCAAGGAGACTTCGAACATTCTGGGTGCTAAGTGGAAGGGGA-T-T-AGT 513 Query 520 G-TAGAAGAGAAGAAGTTTTATGAGGAGAAGTATCAGGTTGATAAGGAAGCTTATCTTCA 578 | | |||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 514 GCT-GAAGAGAAGAAGCCTTATGAGGAGAAGTATCAGGCGGATAAGGAAGCTTATCTTCA 572 Query 579 GGTTATTACAAAGGAGAAGCGCGAAAGGGAAGCTATGAAGCTTCTTGATGATGAACAGAA 638 ||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||| Sbjct 573 GGTTATTACAAAGGAGAAGCGTGAGAGGGAAGCAATGAAGCTTCTTGATGATGAGCAGAA 632 Query 639 GCAGAAAACTGCTATGGAATTGCTTGATCAGTATCTTCACTTTGTTCAGGAAGCTGAACA 698 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 GCAGAAAACTGCAATGGAATTGCTTGATCAGTATCTTCACTTTGTTCAGGAAGCTGAACA 692 Query 699 AGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCTAAACATCCAATATC 758 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 693 TGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCTAAACAACCAATATC 752 Query 759 TGCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGT 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 TGCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGT 812 Query 819 TATTGAGGTCGCAAAGATGACTGGAGAAGAGTGGAAGAATTTATCGGAAGAACAAAAGGC 878 |||||||||||| |||||| ||||||||||||||||||| || ||||||||| ||||||| Sbjct 813 TATTGAGGTCGCTAAGATGGCTGGAGAAGAGTGGAAGAACTTGTCGGAAGAAAAAAAGGC 872 Query 879 TCCTTATGATCAGATGGC-AAAGAAGAACAAGGAGATATACCTGCaagaaatggaaggat 937 |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| Sbjct 873 TCCTTATGATCAGATGGCGAAA-AAGAACAAGGAGATATATCTGCAAGAAATGGAAGGAT 931 Query 938 ataaaataacaaaggaagaagaaaccatgagccagaagaaagaagaagaagaactcatga 997 |||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||| Sbjct 932 ATAAAAGAACAAAGGAAGAAGAAGCAATGAGCCAGAAGAAAGAAGAAGAAGAATTCATGA 991 Query 998 aactccataaacaagaagCTCTTCAACTTCTCaagaagaaggaaaaaaccgacaatatca 1057 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 992 AACTCCATAAACAAGAAGCTCTCCAACTTCTCAAGAAGAAGGAGAAAACCGACAATATCA 1051 Query 1058 taaagaagacgaaagagacgaccaagaacaagaagaagaacgagaaTGTTGATCCTAACA 1117 |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| Sbjct 1052 TAAAGAAGACGAAAGAGACGGCGAAGAACAAGAAAAAGAACGAGAATGTTGATCCTAACA 1111 Query 1118 AACCCAAAAAGCCTGCTTCTTCATACTTTCTCTTCTGCAAAGAAGCAAGAAAGAGTGTGT 1177 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1112 AACCCAAAAAGCCTACTTCTTCATACTTTCTCTTCTGCAAAGACGCAAGAAAGAGTGTGT 1171 Query 1178 TAGAAGAACATCCTGGGATCAACAACTCAACTGTTACCGCCCACATTTCATTGAAATGGA 1237 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1172 TAGAAGAACATCCTGGGATCAACAACTCAACTGTTACTGCTCACATTTCATTGAAATGGA 1231 Query 1238 AGGAACTTGGTGAAGAAGAGAAACAAGTTTACAATGGCAAAGCTGCTGAGTTAATGGAAG 1297 ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 1232 TGGAACTTGGTGAAGAGGAGAAACAAGTTTACAATAGCAAAGCTGCTGAGTTAATGGAAG 1291 Query 1298 CTTATAAGAGAGAAGTGGAAGAGTACAATAAGACCAAGACGTCGTCGTAGAGAAAGAAAA 1357 |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1292 CTTACAAGAAAGAAGTGGAAGAGTACAATAAGACCAAGACTTCGTCGTAGAGAAAGAAAA 1351 Query 1358 ATGAGA 1363 || ||| Sbjct 1352 ATTAGA 1357 > AT4G23800.1 | Symbols: | HMG (high mobility group) box protein | chr4:12390167-12392710 FORWARD LENGTH=1626 Length=1626 Score = 966 bits (523), Expect = 0.0 Identities = 999/1221 (82%), Gaps = 63/1221 (5%) Strand=Plus/Plus Query 140 CAATGTTGGAGAAGATGAAGATCGAGAAGGATAAAACTGAGGATTTGCTgaaggagaagg 199 |||||||||||||||||||||||||||||||||| || ||||| || || |||||||||| Sbjct 219 CAATGTTGGAGAAGATGAAGATCGAGAAGGATAAGACGGAGGAGTTACTTAAGGAGAAGG 278 Query 200 acgagatcctgaagaa-gaaggaagaagaactcgagacga-aggacg-tggaacaggaga 256 | ||||| |||| ||| |||||| || || || ||||| | || ||| || | ||||||| Sbjct 279 ATGAGATTCTGA-GAAAGAAGGAGGAGGAGCTAGAGACCAGAG-ACGCTG-AGCAGGAGA 335 Query 257 aACTTAAGACGGAGTTGAAAAAACTGCAGAAGATGAAAGAATTCAAGCCTAACATGAGTT 316 | || ||| |||| |||| || || ||||||||||| |||||||| |||||||||| || Sbjct 336 AGCTCAAGGTGGAGCTGAAGAAGCTTCAGAAGATGAAGGAATTCAAACCTAACATGACTT 395 Query 317 TTGCGTTTAC--TCAATCTT-TGGCACAAA--CTgaag-aagataagaaggggaagaaga 370 |||| || | ||| || | | |||| | |||| | |||| ||| | ||||||| Sbjct 396 TTGC-TTG-CGGTCAGTCATCTCTCACACAGGCTGA-GCAAGAAAAGGCGAATAAGAAGA 452 Query 371 agaagaagGATTGTGTTGAAACAAAGAGACCATCAACAC-CATATATTTTGTGGTGTAAG 429 |||| ||||||||| ||| |||||| ||||||| | | |||| ||||||||||||| Sbjct 453 AGAAAAAGGATTGTCCTGAGACAAAGCGACCATCGTC-CTCATACGTTTTGTGGTGTAAA 511 Query 430 GAT-AATTGGAAC-GAAGTGAAGAAGCAGAATCCTGAAGCTGATTTCAAGGAGACTTCGA 487 ||| ||| ||| | ||||| |||||| | || ||||| ||||| |||||||||||||||| Sbjct 512 GATCAAT-GGA-CTGAAGTCAAGAAGGAAAACCCTGAGGCTGACTTCAAGGAGACTTCGA 569 Query 488 ATATTCTTGGTGCTAAGTGGAGGACTCTGAGTGTAGAAGAGAAGAAGTTTTATGAGGAGA 547 | ||||| || ||||| |||| | |||| |||| |||||| |||||| ||| ||||| | Sbjct 570 ACATTCTGGGGGCTAAATGGAAGTCTCTTAGTGCAGAAGATAAGAAGCCTTACGAGGA-A 628 Query 548 AG-TATCAGGTTGATAAGGAAGCTTATCTTCAGGTTATTACAAAGGAGAAGCGCGA-AAG 605 || || |||||||| || |||||||| || ||||| ||| | |||||||||||||| ||| Sbjct 629 AGGTACCAGGTTGAGAAAGAAGCTTACCTCCAGGTCATTGCTAAGGAGAAGCGCGAGAAG 688 Query 606 GGAAGCTATGAAGCTTCTTGATGATGAACAGAAGCAGAAAACTGCTATGGAATTGCTTGA 665 | | || ||||||||||| || ||||| |||||||||| |||||| |||||||||||||| Sbjct 689 G-AGGCCATGAAGCTTCTGGAGGATGACCAGAAGCAGAGAACTGCAATGGAATTGCTTGA 747 Query 666 TCAGTATCTTCA-CTTTGTTCAGGAAGCTGAACAAGACAACAAGAAAAAGGCCAAGAAG- 723 ||||||||| || |||||| |||||||||||||| ||||||||||| ||| ||||||| Sbjct 748 TCAGTATCT-CAACTTTGTCCAGGAAGCTGAACAGGACAACAAGAAGAAGAACAAGAAGG 806 Query 724 ATAAAGGATCCC-CTGAAGCCTAAACATCCAATATCTGC-TTACCT-GATCTATGCAAAC 780 | || ||| ||| |||||||| |||||||| ||||||| || ||| | | ||||||||| Sbjct 807 AGAA-GGA-CCCTCTGAAGCCAAAACATCCCGTATCTGCCTT-CCTTGTT-TATGCAAAC 862 Query 781 GAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGTTATTGAGGTCGCAAAGATGACT 840 |||||||||||||||||| | ||||||||||||||| | |||||||||||||| ||| Sbjct 863 GAGAGGAGAGCTGCTTTACGCGAAGAAAACAAAAGCGTCGTGGAGGTCGCAAAGATCACT 922 Query 841 GGAGAAGAGTGGAAGAATTTATCGGA-A-GAACAAAAGGCTCCTTATGATCAGATGGCAA 898 ||||| ||||||||||| || || || | ||| ||| ||| || || || || |||||| Sbjct 923 GGAGAGGAGTGGAAGAACTTGTCAGACAAGAA-AAA-GGCACCCTACGAGAAGGTGGCAA 980 Query 899 AGAAGAACAAGGAGATATACCTGCaagaaatggaaggatataaaata--acaaaggaaga 956 ||||||||||||||| ||||||||||| |||||| ||| ||| || | ||||||||||| Sbjct 981 AGAAGAACAAGGAGACATACCTGCAAGCAATGGA-GGA-ATACAAGAGGACAAAGGAAGA 1038 Query 957 agaaaccatgagccagaagaaagaagaagaagaactcatgaaactccataaacaagaagC 1016 |||| || |||| ||||||||||||||||| |||||| |||||||||| ||||||||||| Sbjct 1039 AGAAGCCCTGAGTCAGAAGAAAGAAGAAGAGGAACTCTTGAAACTCCACAAACAAGAAGC 1098 Query 1017 TCTTCAACTTCTCaagaagaaggaaaaaaccgacaatatcataaagaag-acgaaagaga 1075 ||||||| | || ||||||||||| ||||| || ||| | || |||||| | ||| | | Sbjct 1099 TCTTCAAATGCTTAAGAAGAAGGAGAAAACTGATAATCTGATCAAGAAGGA-GAA-G-G- 1154 Query 1076 cgaccaagaacaagaagaagaacgagaaTGTTGATCCTAACAAACCCAAA-AAGCCTGCT 1134 |||||||||| |||||||||||| || ||||| ||||||||||| ||| ||||||||| Sbjct 1155 CGACCAAGAA---GAAGAAGAACGAAAACGTTGACCCTAACAAACC-AAAGAAGCCTGCT 1210 Query 1135 TCTTCATACTTTCTCTTCTGCAAAGAAGCAAGAAAGAG-TGTGTTAGAAGAACATCCTGG 1193 |||||||||||||||||| |||| || | ||| |||| | || |||||||| ||| || Sbjct 1211 TCTTCATACTTTCTCTTCAGCAAGGACGAAAGGAAGAAAT-TGACAGAAGAACGTCCCGG 1269 Query 1194 GATCAA-CAACTCAACTGTTACCGCCCACATTTCATTGAAATGGAAGGAACTTG-GTGAA 1251 || ||| |||| | |||||||| || | ||||||| |||||||||||||| ||| ||||| Sbjct 1270 GA-CAAACAACGCTACTGTTACTGCTCTCATTTCACTGAAATGGAAGGAA-TTGAGTGAA 1327 Query 1252 GAAGAGAAACAAGTTTACAATGGCAAAG-CTGCTGAGTTAATGGAAGCTTATAAGAGAG- 1309 |||||||| ||||||||||| || |||| | || | | |||||||| || || | || Sbjct 1328 GAAGAGAAGCAAGTTTACAACGG-AAAGGCCGCAAAACTGATGGAAGCATACAAAA-AGG 1385 Query 1310 AAGTGGAAGAGTACAATAAGA 1330 ||||||||| ||||| |||| Sbjct 1386 AAGTGGAAGCTTACAACAAGA 1406 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67118128665 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5