BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489948
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11090.1 | Symbols: TBL23 | TRICHOME BIREFRINGENCE-LIKE 23 |... 1917 0.0
> AT4G11090.1 | Symbols: TBL23 | TRICHOME BIREFRINGENCE-LIKE 23
| chr4:6764537-6766268 REVERSE LENGTH=1454
Length=1454
Score = 1917 bits (1038), Expect = 0.0
Identities = 1297/1420 (91%), Gaps = 26/1420 (2%)
Strand=Plus/Plus
Query 1 GAAGAAGATGATGAAGCTAAAATGGGAATCAATCTCTAATCTTCAACAAAACACATTTCT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 38 GAAGAAGAAGATGAAGCTAAAATGGGAATCAATCTCTAATCTTCAACAAAACACATATCT 97
Query 61 CATCAAACTCGTCGCCGCTACTCTTATAACTTGTCTCGCTTTTCGTTTCTTCGTCTTCCG 120
||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 98 CATAAAACTCGTCGCTGCAACACTTATAACTTGTCTCGCTTTTCGTTTCTTCGTCTTCCG 157
Query 121 CTTCGGTCAATTTTCCCCAGCTCAAGTGTCGGTGAACGGAAACTCCAATTCCCAGATTTC 180
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 158 CTTCGGCCAATTTTCCCCAGTTCAAGTGTCGGTGACCGGAAACTCCAATTCCCAGATTTC 217
Query 181 TCCGTCGTCGT-TTATCTTATCGGATAATGAAGATCAAATTCCCGCCGATATTGAGGTGG 239
|||| |||| | |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 218 TCCGACGTC-TGTTATCTTATCGGATAACGAAGATCAAATTCCCGTCGATATTGAGGTGG 276
Query 240 AGAAGTGTGATCTATTTAATGGGAAATGGATCAAAGATCCTTTGGGACCGATATACACGA 299
|||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||
Sbjct 277 AGAAGTGTGATCTATTTACTGGGAAATGGATTAAAGATCCTTTGGGACCAATCTACACGA 336
Query 300 ATGGGTCGTGTGGTATCGTTGTAGACGGTCATCAGAATTGCATTACTAATGGGAGGCCTG 359
||| ||| ||||||||||||||||| | ||| ||||||||||| |||||||| | ||||
Sbjct 337 ATGAGTCATGTGGTATCGTTGTAGATGCTCACCAGAATTGCATCACTAATGGTCGACCTG 396
Query 360 ATTCGGGGTTTCTCTACTGGAAATGGAAGCCTGATGACTGTTCCTTGCCTCGGTTTGATC 419
|||| || |||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 397 ATTCTGGTTTTCTCAATTGGAAATGGAAGCCTAATGACTGTTCCTTGCCTCGGTTTGATT 456
Query 420 CTCTGAGGTTTCTGCAGCTTATGAGGAATAAATCTTGGGCTATAATCGGTGACTCCATTG 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 CTCTGAGATTTCTGCAGCTTATGAGGAATAAATCTTGGGCTATAATCGGTGACTCCATTG 516
Query 480 CCCGTAATCATGTTGAGTCTTTGCTTTGTATGCTATCTATAGTTGAGAAACCGGTTGAAG 539
| ||||| ||||| ||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 517 CTCGTAACCATGTCGAGTCTTTGCTTTGTATGCTATCTACAGTTGAAAAACCTGTTGAAG 576
Query 540 TGTATCATGATGAGAACTACAGATCGAAGCGTTGGTATTTCCCGTTA-TATAACTTTACA 598
||||||| ||||||||||| ||||||||||||||| |||| || || |||||||||||
Sbjct 577 TGTATCACGATGAGAACTATAGATCGAAGCGTTGGCATTTTCC-TTCGTATAACTTTACG 635
Query 599 ATATCCAACATTTGGTCACCTTTTCTTGTTCAAGCTGCTATTTTTGAAGACTCAAACGGT 658
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 636 GTATCCAACATTTGGTCACCTTTTCTTGTTCAAGCTGATATCTTTGAAGACTCAAATGGT 695
Query 659 GTCTCATCAGCTGCAGTCCAGCTTCACCTTGACAAACTCGACAATACTTGGACTGATCTA 718
||||||||||||||||| |||||||| || || |||||||||||||| ||||||||||||
Sbjct 696 GTCTCATCAGCTGCAGTTCAGCTTCATCTAGATAAACTCGACAATACATGGACTGATCTA 755
Query 719 TTTCCGAGCCTTGACTATGCGATCATCTCTTCAGGGGAATGGTTCCTGAAAACCGCGGTC 778
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 756 TTCCCGAGCCTTGACTATGCGATCATCTCTTCAGGGGAATGGTTCTTGAAAACTGCGGTA 815
Query 779 TACCACGAGAACGCTACTCTCGTCGGATGCCATGGCTGCCCGGAAAGTTCGAACATGACA 838
||||||||||| |||| || ||| |||||||||||||||||||| ||||||||||||||
Sbjct 816 TACCACGAGAATGCTAATCCCGTTGGATGCCATGGCTGCCCGGAGAGTTCGAACATGACG 875
Query 839 GATTTAGGATTTGACTATGCTTACAATACGTCGCTGCGCCATGTTATGGACTTCATAGCA 898
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 876 GATTTAGGATTCGACTATGCTTACAATACGTCGTTGCGCCATGTTATGGACTTCATAGCG 935
Query 899 AAATCTAAAACTAAAGGCATGATCTTTTTCCGGACTTCGATACCAGATCACTTTGAAGAT 958
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 936 AAATCTAAAACTAAAGGCATGATCTTTTTCCGGACTTCGATACCTGATCATTTTGAAGAT 995
Query 959 GGGGAATGGCATAACGGCGGGACTTGTAAGAAAACAGAACCGGTGAGTGAGGAGG-ATGT 1017
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| | ||
Sbjct 996 GGGGAATGGCATAACGGTGGGACTTGTAAGAAAACAGAACCGGTGGGTGAAGAGGCA-GT 1054
Query 1018 CGAGATGAAAGTTCTGAACAAGATCTTGAGAGATGTTGAAATTGTTCAATTCGAGAGAGT 1077
|||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 1055 CGAGATGAAAGTTCTGAACAAGATATTGAGAGATGTTGAGATTAATCAATTCGAGAGAGT 1114
Query 1078 GGTTACCGAGAC----C-GG-GA---A---TCTTAAGCTTCTTGATTTTGCTGGAATGTT 1125
|||||| |||| | || || | ||| |||||||| ||||||||||| |||||
Sbjct 1115 GGTTACGGAGATGGGTCAGGAGAGTGAGAATCTAAAGCTTCTGGATTTTGCTGGCATGTT 1174
Query 1126 GCTGACTCGACCCGACGGGCATCCGGGTCCATACCGAGAGTTTAGGCCGTTTGATAAGGA 1185
||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||
Sbjct 1175 GCTGACTCGACCCGATGGTCATCCGGGTCCATATAGAGAGTTTAGGCCGTTTGATAAAGA 1234
Query 1186 TAAGAACGCAAAGGTACAGAACGATTGTCTACATTGGTGCTTGCCTGGTCCAATTGATCA 1245
||||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1235 TAAGAACGCTACGGTACAGAACGATTGTCTGCATTGGTGCTTGCCTGGTCCGATTGATCA 1294
Query 1246 CTTGAACGATGTCATATTGGAGATCATAGTGAATGGTCGAACCGGGAAGTAACCAGTTTA 1305
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1295 CTTGAACGATGTCATATTGGAGATCATAGTGAATGGTCGAACCGGTAAATAACCAGTTTG 1354
Query 1306 CTTGTGTATCTTAGTCAATTGCT-AAAT--TGGATGAATTTAAAACAGAGGTTTGGTATA 1362
||||| || | ||||||| ||| ||| |||||||||| |||||||||||||||||||
Sbjct 1355 CTTGT--ATGT-AGTCAATGGCTTAAAAACTGGATGAATTGAAAACAGAGGTTTGGTATA 1411
Query 1363 TAGGTCATGTAAATT--GGTAAACTTGAAGAGATTTGGTT 1400
||||||||||||||| ||||||| |||||||||||||||
Sbjct 1412 TAGGTCATGTAAATTTTGGTAAACATGAAGAGATTTGGTT 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68975548830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5