BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489950 Length=1437 Score E Sequences producing significant alignments: (Bits) Value AT4G11120.1 | Symbols: | translation elongation factor Ts (EF-... 2182 0.0 > AT4G11120.1 | Symbols: | translation elongation factor Ts (EF-Ts), putative | chr4:6777802-6780166 FORWARD LENGTH=1492 Length=1492 Score = 2182 bits (1181), Expect = 0.0 Identities = 1346/1424 (95%), Gaps = 17/1424 (1%) Strand=Plus/Plus Query 1 AAAACCATCACCGTCGTTATCACTCACAGTAACCAAACAACTCTTCATCGCCGGGTAAAA 60 |||||||||||||||| | | | ||||||||||||||||||| ||||||||| || | || Sbjct 1 AAAACCATCACCGTCG-T-T-A-TCACAGTAACCAAACAACT-TTCATCGCC-GG-AGAA 53 Query 61 CTGATTGACATAGAAGAAAATGGCGTTTACTAGAGCAGTGAGAAGACCAATTGGAGTCTT 120 |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 54 CTGATTAACATATAAGAAAATGGCGTTTGCTAGAGCAGTGAGAAGACCAATTGGAGTCTT 113 Query 121 TTATTATAGTGTTAGTGGTAGATTTAGTTCTGGAAATGATTATTCTACTGTGGCAAGCAA 180 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 114 TTATTATAGTGTTAGTAGTAGATTTAGTTCTGGAAATGAGTATTCTACTGTGGCAAGCAA 173 Query 181 ATTGGAAACTTTGTCTCAGTACAAAAGCTCTGTATCGTCTGGTTACACAAGCCCTGTTCG 240 ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 174 ATTCGAAACTTTGTCTCAGTACAAAAGCTCTGTACCGTCTGGTTACACAAGCCTTGTTCG 233 Query 241 TGGTTTTGGGAATTTCATACGGAGTTTTAGTTCGGAGGCTCCT-C--CTGTATCTGACCA 297 |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| Sbjct 234 TGGTTTTGGGAATTTCATACGGAGTTTTAGTTCGGAAGCTCCTCCTGCTGTATCTGACCA 293 Query 298 GATGAGTCTTATTAAGCAACTTAGGGAAAGAACTAGTGCTCCTATTAAAGATGTTAAGGC 357 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 AATGAGTCTTATTAAGCAACTTAGGGAAAGAACTAGTGCTCCTATTAAAGATGTTAAGGC 353 Query 358 TTCTTTAGTTGAATGTAATTGGGACCTTGAGGCTGCTCAGAAGGATTTGAGAAAGAGAGG 417 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 354 TTCTTTAGTTGAATGCAATTGGGATCTTGAGGCTGCTCAGAAGGATTTGAGAAAGAGAGG 413 Query 418 GAAAGTTTTGGCTTCGAAAAAGTCGTCACGGACTGCTGCAGAGGGAATGCTTGCGGTTGC 477 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 414 GAAAGTTTTGGCTTCGAAAAAGTCGTCACGGACTGCTGCAGAAGGAATGCTTGCCGTTGC 473 Query 478 TCAAAATGAGGGGAAAGTTGCTGTTATTGAACTTAATTGTGAGACAGATTTTGTTGCTAG 537 ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 474 TCAAAATGAAGGGAAAGTTGCTGTTATTGAACTTAACTGTGAGACTGATTTTGTTGCTAG 533 Query 538 GAATGAGATTTTCCAGTACTTGGCTTTAGCTATGGCAAAACATGCTTTACTGGTTGAAAA 597 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 534 GAATGAGATTTTCCAGTACTTGGCTTTAGCTATGGCAAAACATGCTTTGCTGGTTGAGAG 593 Query 598 TAGCTCTCAACAAGTTTCTGGTGTCTTACCCTTTGGGCCTGAGCTTTTTGAGGAGTTTAA 657 ||| || || ||||||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct 594 TAGTTCGCAGCAAGTTTCTGGTGTCTTCCCCTTTGGGCCGGAGCTTTTTGAGGAGTTCAA 653 Query 658 GCTCAATCTCGATCATCCAAAAGTGAATGGTGAAACCACGGTTTCAAACGCTGTTACAGA 717 ||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 654 GCTTAACCTCGATCATCCAAAAGTTAATGGTGAAACAACGGTTTCAAACGCTGTTACAGA 713 Query 718 AGTAGCTGCAATAATGGGAGAGAATGTAAAATTTAGGAGAGGTTTCTTGATGTCAAAATC 777 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 AGTAGCTGCAATCATGGGAGAGAATGTAAAATTTAGGAGAGGTTTCTTGATGTCAAAATC 773 Query 778 TTCAGCAGGCGTCCTTTCTGCATATCTTCACACAAGTCCTCAACCAGGGTTGGGTCGTAT 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 TTCAGCAGGCGTCCTTTCTGCATATCTTCACACAAGTCCTCAACCAGGGTTGGGTCGTAT 833 Query 838 AGCTGGGATTGTATCTCTGGAAGTGGAAGGTGAAAATACTCAACTAGAGGCCATTCAGCG 897 |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 834 AGCTGGGATTGTATCTCTCGAAGTAGAAGGTGAAAATACTCAACTAGAGGCTATTCAGCG 893 Query 898 TGTAGGCTCAGAACTGGCTATGCAGGTTGTAGCAGCAAAGCCTTTGTTTCTAAGCAAAGA 957 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 894 TGTAGGCTCAGAACTGGCTATGCATGTTGTAGCAGCAAAGCCTTTGTTTTTAAGCAAAGA 953 Query 958 CCTTGTTTCTTCAGAAGCAATAGCAAATGAACGCGAGATTCTAAAGTCTCAGGCAGAAAG 1017 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 954 CCTTGTTTCTTCTGAAGCAATGGCAAATGAACGCGAGATTCTAAAGTCTCAGGCAGAAAG 1013 Query 1018 TACAGGCAAGAATCAGATGGCAATAGAGAAGATTGTGGAAGGGCGTCTCCGTAAGTATTT 1077 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1014 TACAGGCAAGAATCAGATGGCGATAGAGAAGATTGTGGAAGGGCGTCTCCGTAAGTATTT 1073 Query 1078 TGAAGAAGTTGCTTTAATGGAGCAAAAGTTTATCCTGAACGATGCTATAAACATTAAGAC 1137 ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1074 TGAAGAAGTTGCTCTAATGGAGCAAAAGTTTATTGTGAACGATGCTATAAACATTAAGAC 1133 Query 1138 ACTGTTGGATAATTTGTCCAAGGAGGTGGGTTCTCCAGTGAAGGTTACCAATTTT-TTGA 1196 |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| || | Sbjct 1134 ACTGGTGGATAATTTGTCCAAGGAGGTAGGTTCTCCAGTGAAGGTTACCGATTTTCTT-A 1192 Query 1197 GAGTCGAGGTTGGCGAAGGAATCGAAAGGCTTGAAGCATCTGATGAACCTGTTGCTCAAA 1256 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1193 GAGTCGAGGTTGGGGAAGGAATCGAAAGGCTTGAAGCATCTGATGAACCAGTTGCTCAAA 1252 Query 1257 CTGCTTGAAGATAATGAATCAAGGCCATGGTGTTAGATTTACAGACCTCTTTC-TGTCTT 1315 ||||||||||| || ||||||| | |||||| ||||||||||||| ||||||| | |||| Sbjct 1253 CTGCTTGAAGACAAAGAATCAACGACATGGTTTTAGATTTACAGAACTCTTTCCT-TCTT 1311 Query 1316 TGGTTCCTT-AGTGTTCATGGCTTCAATGCCGGTCTTGAGATTATAGAATCTTTTCCCAT 1374 ||||||||| || |||||||||||||| ||| ||||||||||||||||||||| | ||| Sbjct 1312 TGGTTCCTTTAGAGTTCATGGCTTCAACGCCT-TCTTGAGATTATAGAATCTTT-CTCAT 1369 Query 1375 AATTTTGTTTGTCACACAATATGACAATAAGAGTGATTGTGCCT 1418 ||||||||| |||||||||||| |||||||||||||||||||| Sbjct 1370 GATTTTGTTTCTCACACAATATGGCAATAAGAGTGATTGTGCCT 1413 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70832968995 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5