BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489950
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11120.1 | Symbols: | translation elongation factor Ts (EF-... 2182 0.0
> AT4G11120.1 | Symbols: | translation elongation factor Ts (EF-Ts),
putative | chr4:6777802-6780166 FORWARD LENGTH=1492
Length=1492
Score = 2182 bits (1181), Expect = 0.0
Identities = 1346/1424 (95%), Gaps = 17/1424 (1%)
Strand=Plus/Plus
Query 1 AAAACCATCACCGTCGTTATCACTCACAGTAACCAAACAACTCTTCATCGCCGGGTAAAA 60
|||||||||||||||| | | | ||||||||||||||||||| ||||||||| || | ||
Sbjct 1 AAAACCATCACCGTCG-T-T-A-TCACAGTAACCAAACAACT-TTCATCGCC-GG-AGAA 53
Query 61 CTGATTGACATAGAAGAAAATGGCGTTTACTAGAGCAGTGAGAAGACCAATTGGAGTCTT 120
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 54 CTGATTAACATATAAGAAAATGGCGTTTGCTAGAGCAGTGAGAAGACCAATTGGAGTCTT 113
Query 121 TTATTATAGTGTTAGTGGTAGATTTAGTTCTGGAAATGATTATTCTACTGTGGCAAGCAA 180
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 114 TTATTATAGTGTTAGTAGTAGATTTAGTTCTGGAAATGAGTATTCTACTGTGGCAAGCAA 173
Query 181 ATTGGAAACTTTGTCTCAGTACAAAAGCTCTGTATCGTCTGGTTACACAAGCCCTGTTCG 240
||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 174 ATTCGAAACTTTGTCTCAGTACAAAAGCTCTGTACCGTCTGGTTACACAAGCCTTGTTCG 233
Query 241 TGGTTTTGGGAATTTCATACGGAGTTTTAGTTCGGAGGCTCCT-C--CTGTATCTGACCA 297
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 234 TGGTTTTGGGAATTTCATACGGAGTTTTAGTTCGGAAGCTCCTCCTGCTGTATCTGACCA 293
Query 298 GATGAGTCTTATTAAGCAACTTAGGGAAAGAACTAGTGCTCCTATTAAAGATGTTAAGGC 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AATGAGTCTTATTAAGCAACTTAGGGAAAGAACTAGTGCTCCTATTAAAGATGTTAAGGC 353
Query 358 TTCTTTAGTTGAATGTAATTGGGACCTTGAGGCTGCTCAGAAGGATTTGAGAAAGAGAGG 417
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 354 TTCTTTAGTTGAATGCAATTGGGATCTTGAGGCTGCTCAGAAGGATTTGAGAAAGAGAGG 413
Query 418 GAAAGTTTTGGCTTCGAAAAAGTCGTCACGGACTGCTGCAGAGGGAATGCTTGCGGTTGC 477
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 414 GAAAGTTTTGGCTTCGAAAAAGTCGTCACGGACTGCTGCAGAAGGAATGCTTGCCGTTGC 473
Query 478 TCAAAATGAGGGGAAAGTTGCTGTTATTGAACTTAATTGTGAGACAGATTTTGTTGCTAG 537
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 474 TCAAAATGAAGGGAAAGTTGCTGTTATTGAACTTAACTGTGAGACTGATTTTGTTGCTAG 533
Query 538 GAATGAGATTTTCCAGTACTTGGCTTTAGCTATGGCAAAACATGCTTTACTGGTTGAAAA 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 534 GAATGAGATTTTCCAGTACTTGGCTTTAGCTATGGCAAAACATGCTTTGCTGGTTGAGAG 593
Query 598 TAGCTCTCAACAAGTTTCTGGTGTCTTACCCTTTGGGCCTGAGCTTTTTGAGGAGTTTAA 657
||| || || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 594 TAGTTCGCAGCAAGTTTCTGGTGTCTTCCCCTTTGGGCCGGAGCTTTTTGAGGAGTTCAA 653
Query 658 GCTCAATCTCGATCATCCAAAAGTGAATGGTGAAACCACGGTTTCAAACGCTGTTACAGA 717
||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 654 GCTTAACCTCGATCATCCAAAAGTTAATGGTGAAACAACGGTTTCAAACGCTGTTACAGA 713
Query 718 AGTAGCTGCAATAATGGGAGAGAATGTAAAATTTAGGAGAGGTTTCTTGATGTCAAAATC 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AGTAGCTGCAATCATGGGAGAGAATGTAAAATTTAGGAGAGGTTTCTTGATGTCAAAATC 773
Query 778 TTCAGCAGGCGTCCTTTCTGCATATCTTCACACAAGTCCTCAACCAGGGTTGGGTCGTAT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTCAGCAGGCGTCCTTTCTGCATATCTTCACACAAGTCCTCAACCAGGGTTGGGTCGTAT 833
Query 838 AGCTGGGATTGTATCTCTGGAAGTGGAAGGTGAAAATACTCAACTAGAGGCCATTCAGCG 897
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 834 AGCTGGGATTGTATCTCTCGAAGTAGAAGGTGAAAATACTCAACTAGAGGCTATTCAGCG 893
Query 898 TGTAGGCTCAGAACTGGCTATGCAGGTTGTAGCAGCAAAGCCTTTGTTTCTAAGCAAAGA 957
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 894 TGTAGGCTCAGAACTGGCTATGCATGTTGTAGCAGCAAAGCCTTTGTTTTTAAGCAAAGA 953
Query 958 CCTTGTTTCTTCAGAAGCAATAGCAAATGAACGCGAGATTCTAAAGTCTCAGGCAGAAAG 1017
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 954 CCTTGTTTCTTCTGAAGCAATGGCAAATGAACGCGAGATTCTAAAGTCTCAGGCAGAAAG 1013
Query 1018 TACAGGCAAGAATCAGATGGCAATAGAGAAGATTGTGGAAGGGCGTCTCCGTAAGTATTT 1077
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TACAGGCAAGAATCAGATGGCGATAGAGAAGATTGTGGAAGGGCGTCTCCGTAAGTATTT 1073
Query 1078 TGAAGAAGTTGCTTTAATGGAGCAAAAGTTTATCCTGAACGATGCTATAAACATTAAGAC 1137
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 TGAAGAAGTTGCTCTAATGGAGCAAAAGTTTATTGTGAACGATGCTATAAACATTAAGAC 1133
Query 1138 ACTGTTGGATAATTTGTCCAAGGAGGTGGGTTCTCCAGTGAAGGTTACCAATTTT-TTGA 1196
|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| || |
Sbjct 1134 ACTGGTGGATAATTTGTCCAAGGAGGTAGGTTCTCCAGTGAAGGTTACCGATTTTCTT-A 1192
Query 1197 GAGTCGAGGTTGGCGAAGGAATCGAAAGGCTTGAAGCATCTGATGAACCTGTTGCTCAAA 1256
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1193 GAGTCGAGGTTGGGGAAGGAATCGAAAGGCTTGAAGCATCTGATGAACCAGTTGCTCAAA 1252
Query 1257 CTGCTTGAAGATAATGAATCAAGGCCATGGTGTTAGATTTACAGACCTCTTTC-TGTCTT 1315
||||||||||| || ||||||| | |||||| ||||||||||||| ||||||| | ||||
Sbjct 1253 CTGCTTGAAGACAAAGAATCAACGACATGGTTTTAGATTTACAGAACTCTTTCCT-TCTT 1311
Query 1316 TGGTTCCTT-AGTGTTCATGGCTTCAATGCCGGTCTTGAGATTATAGAATCTTTTCCCAT 1374
||||||||| || |||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct 1312 TGGTTCCTTTAGAGTTCATGGCTTCAACGCCT-TCTTGAGATTATAGAATCTTT-CTCAT 1369
Query 1375 AATTTTGTTTGTCACACAATATGACAATAAGAGTGATTGTGCCT 1418
||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1370 GATTTTGTTTCTCACACAATATGGCAATAAGAGTGATTGTGCCT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5