BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489952
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11140.1 | Symbols: CRF1 | cytokinin response factor 1 | chr... 1175 0.0
> AT4G11140.1 | Symbols: CRF1 | cytokinin response factor 1 | chr4:6794776-6795793
REVERSE LENGTH=1018
Length=1018
Score = 1175 bits (636), Expect = 0.0
Identities = 910/1032 (88%), Gaps = 60/1032 (6%)
Strand=Plus/Plus
Query 1 ATGGAGACAGCGAAGAAAGTTTCTCTCCCAAGAATCTTACGAATCTCTGTTACTGATCCT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGACAGAGAAGAAAGTTTCTCTCCCAAGAATCTTACGAATCTCTGTTACTGATCCT 60
Query 61 TACGCTACAGATTCATCAAGCGACGAAGAAGAAGAAGATGGTTTTGAAGCAATCA-CTAG 119
||||| |||||||| |||||||||||||||||||||| || |||||| || || | |||
Sbjct 61 TACGCAACAGATTCGTCAAGCGACGAAGAAGAAGAAGTTGATTTTGATGC-ATTATCTAC 119
Query 120 AAAACGACGTCGTGTTAAGAAATACGTGAACGAAGTGGTTCTTGAATC---GGTTTCTGA 176
||||||||||||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct 120 AAAACGACGTCGTGTTAAGAAGTACGTGAAGGAAGTGGTGCTTGATTCGGTGGTTTCTGA 179
Query 177 TAAAGGA-AAGCCGATgaagaagaagagaaagaagaGTGTAGCTACTGCTCCGGTGGTTG 235
|||| || ||||||||||||||||||||||||||| | || | ||||| ||| |||||||
Sbjct 180 TAAA-GAGAAGCCGATGAAGAAGAAGAGAAAGAAGCGCGTTGTTACTGTTCCAGTGGTTG 238
Query 236 TTACGGCGGCGGCGAGGAAGTTTCGTGGAGTGAGACAAAGACCTTGGGGAAAATGGGCGG 295
||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 239 TTACGACGGCGACGAGGAAGTTTCGTGGAGTGAGGCAAAGACCGTGGGGAAAATGGGCGG 298
Query 296 CGGAGATTAGAGATCCTAGTAGACGTGTTAGGGTTTGGTTAGGTACTTTTGACACGGCGG 355
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGGAGATTAGAGATCCGAGTAGACGTGTTAGGGTTTGGTTAGGTACTTTTGACACGGCGG 358
Query 356 AGGAAGCTGCCATTGTTTACGATAACGCTGCTATTCAGCTACGTGGTCCTAACGC-GCTG 414
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 359 AGGAAGCTGCCATTGTTTACGATAACGCAGCTATTCAGCTACGTGGTCCTAACGCAGA-G 417
Query 415 CTTAACTTCTCTCCTCCTCCGGTGACGGAAAATGGTGAAGAAGAAGCTTCGACGGAGGTG 474
||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 418 CTTAACTTCCCTCCTCCTCCGGTGACGGAGAATGTTGAAGAAG---CTTCGACGGAGGTG 474
Query 475 GAAGAAACTTCGGGTTTAATCAGTGGTGGTGGTGGATGTCTTCATTCGCCGGTTTCTGTT 534
||| | ||||| ||| |||| ||| ||||| | |||||||| ||||||||||||||||
Sbjct 475 AAAGGAGTTTCGGATTTTATCATTGGCGGTGGAGAATGTCTTCGTTCGCCGGTTTCTGTT 534
Query 535 CTCCACTCTCCGTTCTCCGGTGAGTCTACGGCGAAGATTGGGGTGAAAGAGGAAGTTTC- 593
||| | |||||||||||||| |||||||| ||| | || |||||||| ||||
Sbjct 535 CTCGAATCTCCGTTCTCCGGCGAGTCTACTGCG--G-TT------AAAGAGGA-GTTTGT 584
Query 594 CGGCGTATCGACGGCGGAGATTGTGGTTAAAGAGGAGCCGTCCTTTAACG-TCTCGGATT 652
||| ||||||||||||||||||||||||||| |||||||||| ||||||| | || ||||
Sbjct 585 CGGTGTATCGACGGCGGAGATTGTGGTTAAAAAGGAGCCGTCTTTTAACGGT-TCAGATT 643
Query 653 TCTCGGCGCCGTTGTTCTCGGACGACGACGTGTTTGGTTT-TCCGACGTCGATGAGTGAT 711
||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 644 TCTCGGCGCCGTTGTTCTCGGACGACGACGTTTTTGGTTTCTC-GACGTCGATGAGTGAA 702
Query 712 TGTTTCGGCGGCGATTTATTCGGAGATAACCTTTTTGCGGATATGAGTTTTGGATCCGGG 771
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 703 AGTTTCGGCGGCGATTTATTTGGAGATAATCTTTTTGCGGATATGAGTTTTGGATCCGGG 762
Query 772 TTTGGGTTCGGGTCTGG------ATTCTCCAGCTGGCACGTGGAGGACCATTTTCAAGAT 825
||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 763 TTTGGATTCGGGTCTGGGTCTGGATTCTCCAGCTGGCACGTTGAGGACCATTTTCAAGAT 822
Query 826 ATTGGGGATTTATTCGGGTCGGATCCT--CT---CT-T--AA-------CTG----TTTA 866
||||||||||||||||||||||||||| || || | || ||| ||||
Sbjct 823 ATTGGGGATTTATTCGGGTCGGATCCTGTCTTAACTGTTTAAGAAATAACTGGCCGTTTA 882
Query 867 ACGGCGTTTAGTGAAGTTTTGTTACCGGCGACGGCGAGGAT-ATAAAAATATCGGCGAtt 925
||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||
Sbjct 883 ACGGCGTTTAGTGAAGTTTTGTTACCGGCGACGGCGAGGATTAAAAAAAAA-CGGCGATT 941
Query 926 ttttttttATAAATGAAGATTTGTTATATATATTAAAGTTTTA---AACTTAATTAATGG 982
| |||||| || ||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 942 TATTTTTTG-AA-TGAAGATTTGTTAAATATATTAAACTTTTTTGTAACTTAATTAATGG 999
Query 983 TGAtttt-tttt 993
||||||| ||||
Sbjct 1000 TGATTTTATTTT 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5