BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489953
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11150.1 | Symbols: TUF, emb2448, TUFF, VHA-E1 | vacuolar AT... 1448 0.0
AT3G08560.1 | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E is... 154 2e-36
> AT4G11150.1 | Symbols: TUF, emb2448, TUFF, VHA-E1 | vacuolar
ATP synthase subunit E1 | chr4:6799935-6801932 FORWARD LENGTH=1085
Length=1085
Score = 1448 bits (784), Expect = 0.0
Identities = 932/996 (94%), Gaps = 39/996 (4%)
Strand=Plus/Plus
Query 1 AGACAACTTCAAATTAGTCATCACCACGTCGCGAAAATCCGATCTACGtctctctctctc 60
|||||||||||||||| ||| |||||||||| |||||||||||||||| ||||| ||
Sbjct 6 AGACAACTTCAAATTACTCAACACCACGTCGTGAAAATCCGATCTACG----TCTCTGTC 61
Query 61 tcttctccaatctctctGCGCCACAG-A-------A-TTACG---A------AAACCTCC 102
|| ||||||||||||||||||||||| | | ||||| | ||||||||
Sbjct 62 TC-TCTCCAATCTCTCTGCGCCACAGAATTGTGCGATTTACGAAAATCTCTGAAACCTCC 120
Query 103 GATCGTTAA---CG---G-CGA-----CCGGTAAAAATGAACGACGGAGATGTATCGAGG 150
||||||||| || | ||| |||||||||||||||||||||||||||||||||
Sbjct 121 GATCGTTAACGGCGACCGCCGATTTTCCCGGTAAAAATGAACGACGGAGATGTATCGAGG 180
Query 151 CAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCAGAAGAGAAAGCAAACGAGATC 210
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCGGAAGAGAAAGCAAACGAGATC 240
Query 211 TCGGTTTCCGCTGAAGAAGAATTCAACATTGAGAAACTTCAGCTTGTTGAGGCGGagaag 270
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TCGGTTTCTGCTGAAGAAGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGAGAAG 300
Query 271 aagaagatcaggcaagattatgagaagaaggagaagcaagctgatgttcgcaagaagatT 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAAGATCAGGCAAGATTATGAGAAGAAGGAGAAGCAAGCTGATGTTCGCAAGAAGATT 360
Query 331 GATTACTCTATGCAGCTAAATGCTTCAAGGATCAAAGTTCTTCAAGCGCAGGACGATATT 390
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 361 GATTACTCTATGCAGCTAAATGCATCAAGGATCAAAGTTCTTCAAGCGCAAGACGATATT 420
Query 391 GTCAATGCCATGAAAGACCAAGCTGCTAAGGATCTTCTGAATGTGAGTCGCGATGAGTAT 450
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 421 GTCAATGCCATGAAAGACCAAGCAGCTAAGGATCTTCTGAACGTTAGTCGCGATGAGTAT 480
Query 451 GCCTACAAACAGCTTCTCAAGGATCTGATTGTTCAGTGTTTGCTTCGGTTGAAAGAACCT 510
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGTGTTTGCTTCGGTTGAAAGAACCT 540
Query 511 TCTGTGTTGTTGCGTTGTCGTGAAGAGGACTTGGGTTTAGTTGAAGCTGTGCTTGATGAT 570
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 541 TCTGTGTTGTTGCGTTGTCGTGAAGAGGACTTGGGTTTAGTGGAAGCTGTACTTGATGAC 600
Query 571 GCAAAGGAGGAATATGCTGGCAAAGCAAAGGTTCATGCCCCAGAGGTCGCTGTTGACACA 630
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GCAAAGGAGGAATATGCTGGTAAAGCAAAGGTTCATGCCCCAGAGGTTGCTGTTGACACA 660
Query 631 AAAATATTCCTTCCTCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGCTCTGGA 690
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGCTCTGGA 720
Query 691 GGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGT 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGT 780
Query 751 CTTGATGTGGCATTCCGTATGAAACTCCCAGTGATCCGTAAGTCGTTGTTCGGCCAAGTT 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTGATGTGGCATTCCGTATGAAACTCCCAGTGATCCGTAAGTCGTTGTTCGGCCAAGTT 840
Query 811 ACTGCCTGATGAAAGAAAGGGAAAGAGA---GAGATGATTCAAACCGGTTTGTGTTTGGT 867
|||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||
Sbjct 841 ACTGCCTGATGAAAGAAAGGAAAAGAGAAAAGAGATTATTCAAACCGGTTTGCGTTTGGT 900
Query 868 TATTTACCTATTTTGGGAGAGAAATCTCTTTTGTTGTGATTCTTTGTATTTTGCAAAATC 927
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 901 TATTTACCTATTTTGGGAGAGATTTCTCTTT-GTTGTGATTCTTTGTATTTTGCAAAATC 959
Query 928 TTACTTTGGTGCCAAACCCATCGAACGCTTCTTTTT 963
||||||||||||||||||||||||||||||||||||
Sbjct 960 TTACTTTGGTGCCAAACCCATCGAACGCTTCTTTTT 995
Score = 82.4 bits (44), Expect = 8e-15
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 963 TGTGTGTTATCATGGCTATACAAATAAATAAAATGAAAGACATCTTT 1009
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1027 TGTGTGTTATCATGGCTATACAAATAAATAAAATGAAAGACTTCTTT 1073
> AT3G08560.1 | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E
isoform 2 | chr3:2600130-2601907 FORWARD LENGTH=708
Length=708
Score = 154 bits (83), Expect = 2e-36
Identities = 236/309 (76%), Gaps = 14/309 (5%)
Strand=Plus/Plus
Query 127 ATGAACGACG-GAGATGTATCGAGGCAGATCCAGCAGATGGTGAGATTTATCCGCCAAGA 185
|||||||| | | ||||| || | |||||| ||||||||||| | || ||||| |||||
Sbjct 1 ATGAACGATGCG-GATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTCATCCGGCAAGA 59
Query 186 AGCAGAAGAGAAAGCAAACGAGATCTCGGTTTCCGCTGAAGAAGAATTCAACATTGAGAA 245
||||||||||||||||||||||||||| | ||||| || || ||||||||||| || ||
Sbjct 60 AGCAGAAGAGAAAGCAAACGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATAGA-AA 118
Query 246 -ACTTCAGCTTGTTGAGGCGGagaagaag-aagatcaggcaagattatgagaag-aagga 302
|||||||||| | ||| | | ||| | ||| || | ||||| ||||| | |||
Sbjct 119 GACTTCAGCTTCTCGAGTCTGCCAAGC-GTAAGCTCCGTCAAGACTATGACC-GCAAGCT 176
Query 303 gaagcaagctgatgttcgcaagaagatT-GATTACTCTATGCAGCTAAATGCTTCAAGGA 361
||||| | |||| | |||||| || | || ||||| | || || ||||| ||||
Sbjct 177 CAAGCAGGTTGATATCCGCAAGC-GAATCGACTACTCCACACAACTGAATGCAAGTAGGA 235
Query 362 TCAAAGTTC-TTCAAGCGCAGGACGATATTGTCAATGCCATGAAAGAC-CAAGCTGCTAA 419
| || || | ||||||| || || || |||||| ||||||||||||| | || |||||
Sbjct 236 TTAA-GTACCTTCAAGCTCAAGATGACGTTGTCACTGCCATGAAAGACTCC-GCAGCTAA 293
Query 420 GGATCTTCT 428
|||||||||
Sbjct 294 GGATCTTCT 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5