BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489954
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11160.1 | Symbols: | Translation initiation factor 2, smal... 3707 0.0
> AT4G11160.1 | Symbols: | Translation initiation factor 2, small
GTP-binding protein | chr4:6803594-6806875 FORWARD LENGTH=2633
Length=2633
Score = 3707 bits (2007), Expect = 0.0
Identities = 2241/2355 (95%), Gaps = 11/2355 (0%)
Strand=Plus/Plus
Query 14 CATTTTTGTCCAGTTTGTTTGGTTTGGGCATTCAAGCCTCTTTTAGAATAGGTTTGGTTC 73
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CATTTTTGTCAAGTTTGTTTGGTTTGGGCATTCAAGCCTCTTTTAGAATAGGTTTGGTTC 319
Query 74 TTCCACGAGTAGTAGTAGCATCTACAGAGAGGCAGATTTCCTCTACGGTTTCAAAAAGAG 133
|||| | | ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 320 TTCCTC--G-AGTAGTAGCATCTACAGAGAGACAGATTTCCTCTACGGTTTTAAAAAGAG 376
Query 134 CTTCTGAAAGTGTCTCTTTTTCATTCGCTCGGTACATAAATGGGTTTGGTTTTAGTTCGC 193
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 377 CTTCTGAAAGTGTCTCTTTTTCATTCGCTCCGTACATAAATGGGTTTGGTTTTAGTTCGT 436
Query 194 TATCAAATTGGTCTCGTAGTCATGAATCTTTCCCTAGTGGAACATCCATAAGGTATTTTC 253
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 437 TATCAAATTGGTCTCGTAGTTATGAATCTTTCCCTACTGAAACATCCATAAGGTATTTTC 496
Query 254 ATGCGAGTCGAGAAACATTGGCGAAAAGAAAAGAGGATGCTGATCGACTGCTGAGTCATC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 ATGCGAGTCGAGAAACATTGGCGAAAAGAAAAGAGGATGCTGATCGACTGCTGAGTCATC 556
Query 314 GTGAACGCAAGAAACAGACTGTGAAAACGAAAGGAAAGTTCTCTAAACGGGAGAAAAAAC 373
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 557 GTGAACGCAAGAAACAGACTGTGAAAACGAAAGGAAAGTTCTCAAAACGGGAGAAAAAAA 616
Query 374 CGGATAAGCCACCTGTTGAAGCTCCTTATGTGCCTCCTAGGCTGCAAAGATTGGCAAAGG 433
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 617 CAGATAAGCCACCTGTTGAAGCTCCTTATGTGCCTCCTAGGCTGAAAAGATTGGCAAAGG 676
Query 434 GATTGCCTGAGAAGACGGTCGACATATTCGAAGGGATGACACTACTTGAGCTCTCCAAGC 493
||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 677 GATTGCCTGGGAAGACTGTCGACATATTTGAAGGGATGACACTACTTGAGCTCTCCAAGC 736
Query 494 GTACTGGTGAGTCAGTGGCAGTTTTGCAGAGCATTCTCATCAATGTTGGTGAAACTTTTA 553
||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 737 GTACTGGTGAGTCTGTGGCGGTTTTGCAGAGCATTCTCATTAATGTTGGGGAAACTTTTA 796
Query 554 GTTCAGAATTCGACACAATCAGTGTTGATGTCGCCGAGCTTCTTGCAATGGAAATCGGAA 613
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 797 GTTCAGAATTCGACACAATCAGTGTTGATGTCGCCGAGCTTCTTGCTATGGAAATCGGGA 856
Query 614 TTAACGTAAGGAGGCAACATTCTACAGAAGGATCTGATATTCTTCCACGGCCTCCAGTTG 673
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 857 TCAACGTAAGGAGGCAACATTCTACAGAAGGATCTGAGATTCTTCCACGGCCTCCAGTTG 916
Query 674 TAACCGTAATGGGCCATGTCGATCATGGAAAAACCTCGTTGTTGGATGCATTAAGAAACA 733
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 917 TAACCGTAATGGGCCATGTCGATCATGGAAAAACCTCGTTGCTGGATGCTTTAAGAAACA 976
Query 734 CCTCTGTTGCGGCAAGAGAAGCTGGTGGAATCACTCAGCATGTGGGTGCTTTCGTGGTGG 793
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 977 CCTCTGTTGCAGCAAGAGAAGCTGGTGGAATCACTCAGCACGTGGGTGCTTTCGTGGTAG 1036
Query 794 GCATGCCGGATTCTGGCACTTCAATCACATTTCTCGACACACCTGGCCATGCCGCTTTCA 853
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1037 GCATGCCGGATTCTGGCACTTCAATCACATTCCTCGACACACCTGGCCATGCCGCTTTCA 1096
Query 854 GCGAGATGCGAGCTCGGGGTGCTGCTGTGACTGATATAGTCGTCTTGGTGGTTGCTGCTG 913
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 GCGAGATGCGAGCTCGGGGAGCTGCTGTGACTGATATAGTCGTCTTGGTGGTTGCTGCTG 1156
Query 914 ATGATGGGGTAATGCCACAGACACTCGAGGCTATTGCGCACGCTAGATCAGCGAATGTGC 973
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1157 ATGATGGGGTAATGCCGCAGACACTCGAGGCTATTGCGCACGCTAGATCAGCGAATGTTC 1216
Query 974 CGATTGTGGTTGCGATCAATAAATGCGATAAACCAGGAGCTAATCCGGAAAAAGTTAAGT 1033
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1217 CGGTTGTGGTTGCGATCAATAAATGCGATAAACCTGGAGCTAATCCGGAAAAAGTTAAGT 1276
Query 1034 ACCAGCTCACGTCTGAAGGGATAGAGCTCGAGGATATTGGAGGAAATGTTCAGGCTGTTG 1093
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1277 ACCAGCTCACGTCTGAGGGGATAGAGCTTGAGGATATTGGAGGAAATGTTCAGGCTGTTG 1336
Query 1094 AGGTATCTGCAGCGAAGAATACAGGGCTAGACAAATTAGAAGAAGCTCTGCTTCTCCAAG 1153
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 AGGTATCTGCAGCGAAGAGTACAGGGCTAGACAAATTAGAAGAAGCTCTGCTTCTCCAAG 1396
Query 1154 CCGTGGATATGGACCTCAAAGCACGTGTGGATGGACCAGCTCAAGCATATGTGGTGGAGG 1213
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 CTGTGGATATGGACCTGAAAGCACGTGTGGATGGACCAGCTCAAGCATATGTGGTGGAGG 1456
Query 1214 CTCGGCTTGACAAAGGCCGTGGACCGTTAGCCACCATAATTGTAAAAGCCGGAACCTTGG 1273
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1457 CTCGGCTTGACAAAGGCCGTGGACCGTTAGCCACCATTATTGTAAAAGCCGGAACTTTGG 1516
Query 1274 TGAGGGGTCAGCATGTAGTCATCGGGTCTCAGTGGGGAAGACTCAGGGCTATTCGGGACA 1333
| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1517 TTAGGGGTCAGCATGTAGTCATTGGGTGTCAGTGGGGAAGACTCAGGGCTATTCGGGACA 1576
Query 1334 TGATCGGTAAGACAACAGACCGAGCAACACCAGCGATGCCCGTCGAGATTGAAGGGCTTA 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 TGATCGGTAAGACAACAGACCGAGCAACACCAGCGATGCCCGTCGAGATTGAAGGGCTTA 1636
Query 1394 AAGGTCTTCCAATGGCTGGCGACGATGTCATTGTGGTGGAATCAGAGGAACGCGCGAGGA 1453
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1637 AAGGTCTTCCAATGGCTGGCGACGATGTGATTGTGGTGGAATCAGAGGAACGCGCAAGAA 1696
Query 1454 TGCTTAGCGAAGGGCGAAAAAGGAAATATGAAAAAGATCGGTTGTTAAAAGCAGAGGAAG 1513
|||| ||||||||| | ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1697 TGCTGAGCGAAGGGAGGAAAAGAAAATATGAGAAAGATCGGTTGTTGAAAGCAGAGGAAG 1756
Query 1514 CGAGAATAGAGGAAGCCGCAGCGAGAATGGAAACAGAGTCTGAAGAAGGGTTTGTTCGGG 1573
||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1757 CGAGATTAGAGGAAGCAGCAGCGAGATTGGAAACAGAGTCTGAAGAAGGGTTTGTTCGGG 1816
Query 1574 TTGAATTACCGATAGTTGTGAAATCGGATGTGCAAGGGACTGCACAGGCTGTTGCTGATG 1633
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1817 TTGAATTACCGATAGTAGTGAAATCAGATGTGCAAGGGACTGCACAGGCTGTTGCTGATG 1876
Query 1634 CGTTAAGAACATTAAATAGCCCACAGGTATTTGTGAACATTGTTCATAGCGGAGTGGGAG 1693
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1877 CGTTAAGAACATTAAATAGCCCACAGGTGTCTGTGAACATTGTTCATAGCGGAGTGGGAG 1936
Query 1694 CAATTTCTCACTCTGATTTGGACTTGGCACAAGCTTGCGGTGCATGTATCGTTGGGTTTA 1753
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1937 CAATATCTCACTCTGATTTGGACTTGGCACAAGCTTGCGGTGCGTGTATTGTTGGGTTTA 1996
Query 1754 ACGTTAAGGGTGGAAGTTCTGCTAATCTTTCTGCGGCTCAAGCCAGCGTCAAGGTATTCC 1813
||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1997 ACGTTAAGGGTGGAAGTACTGGTAATCTTTCTGCGGCTCAAGGCAGCGTCAAGGTATTCC 2056
Query 1814 ACCACCGAGTGATATACCATTTGCTTGAAGACATCGGGAACTTGATCGTAGAAAAGGCAC 1873
| ||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 2057 ATCACCGTGTGATATACCATTTACTCGAAGACATCGGGAACTTGATCGTAGAAAAAGCAC 2116
Query 1874 CAGGAGTTTCGGAGATGGAGGTGGCTGGTGAAGCCGAGGTACTTAGCATTTTCAAAATCT 1933
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 2117 CAGGAGTTTCGGAGATGGAGGTGTCTGGTGAAGCCGAGGTACTTAGCATATTCAAGATCT 2176
Query 1934 TAGGAAAGAGAAGAACCGAAGAAGATGGAGTAAGCATTGCAGGTTGCAAAGTAATGGATG 1993
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 2177 TAGGAAAGAGAAGAACCGAAGAAGATGGAGTAAACATCGCAGGTTGCAAAGTGATGGATG 2236
Query 1994 GTCGGGTATGTAGAAGTGGACTCATGAGGCTGTTGCGGAGCGGAGAAGTGGTCTTTGAAG 2053
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 2237 GTCGGGTATGTAGAAGCGGACTCATGAGGCTGTTACGAAGCGGAGAAGTGGTCTTCGAAG 2296
Query 2054 GCTCGTGCGCGTCGCTGAAACGAGAGAAACAAGACGTGGAACAGGTAGGGAAAGGGAACG 2113
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2297 GCTCGTGTGCGTCGCTGAAACGGGAGAAACAAGACGTGGAACAGGTCGGGAAAGGGAACG 2356
Query 2114 AGTGTGGACTTGTGATGGGAGATTGGAATGATTTTAGAGTCGGAGATGTGATTCAGTGCA 2173
||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2357 AGTGTGGGCTTGTGTTTGGAGATTGGAATGATTTTAGAGTGGGAGATGTGATTCAATGCA 2416
Query 2174 TGGAGCCAGTCATTAGGAAACCTAAATTCATTTCCTCTGAGAGTGGAGCTGTGAGAATTG 2233
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2417 TGGAACCAGTCATTAGAAAACCTAAATTCATATCCTCTGAGAGTGGAGCTGTGAGAATTG 2476
Query 2234 AATGCTGAGAT--CTACTAAACCTTAAAACTCCTTAA--AATTAAATCTGATTGTTTAGG 2289
|||||||||| |||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 2477 AATGCTGAGAGAGCTACTAAACCGTAAAACTCCTAAATCAATTAAATCTGATTGTTTAGG 2536
Query 2290 ATATTGAATTTTGCCTGTTACGCTGATTATTTTTTCTTTTGATAT--T-GAAAACTATCT 2346
||||||| ||||| | |||||||||| ||| ||||||||| ||| | ||||||| |||
Sbjct 2537 ATATTGATTTTTGG-TCTTACGCTGATGATTATTTCTTTTGTTATACTAGAAAACTGTCT 2595
Query 2347 TATTATCAAAAGAAA 2361
|||||||||||||||
Sbjct 2596 TATTATCAAAAGAAA 2610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117218272575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5