BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489954 Length=2361 Score E Sequences producing significant alignments: (Bits) Value AT4G11160.1 | Symbols: | Translation initiation factor 2, smal... 3707 0.0 > AT4G11160.1 | Symbols: | Translation initiation factor 2, small GTP-binding protein | chr4:6803594-6806875 FORWARD LENGTH=2633 Length=2633 Score = 3707 bits (2007), Expect = 0.0 Identities = 2241/2355 (95%), Gaps = 11/2355 (0%) Strand=Plus/Plus Query 14 CATTTTTGTCCAGTTTGTTTGGTTTGGGCATTCAAGCCTCTTTTAGAATAGGTTTGGTTC 73 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 CATTTTTGTCAAGTTTGTTTGGTTTGGGCATTCAAGCCTCTTTTAGAATAGGTTTGGTTC 319 Query 74 TTCCACGAGTAGTAGTAGCATCTACAGAGAGGCAGATTTCCTCTACGGTTTCAAAAAGAG 133 |||| | | ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 320 TTCCTC--G-AGTAGTAGCATCTACAGAGAGACAGATTTCCTCTACGGTTTTAAAAAGAG 376 Query 134 CTTCTGAAAGTGTCTCTTTTTCATTCGCTCGGTACATAAATGGGTTTGGTTTTAGTTCGC 193 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 377 CTTCTGAAAGTGTCTCTTTTTCATTCGCTCCGTACATAAATGGGTTTGGTTTTAGTTCGT 436 Query 194 TATCAAATTGGTCTCGTAGTCATGAATCTTTCCCTAGTGGAACATCCATAAGGTATTTTC 253 |||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| Sbjct 437 TATCAAATTGGTCTCGTAGTTATGAATCTTTCCCTACTGAAACATCCATAAGGTATTTTC 496 Query 254 ATGCGAGTCGAGAAACATTGGCGAAAAGAAAAGAGGATGCTGATCGACTGCTGAGTCATC 313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 ATGCGAGTCGAGAAACATTGGCGAAAAGAAAAGAGGATGCTGATCGACTGCTGAGTCATC 556 Query 314 GTGAACGCAAGAAACAGACTGTGAAAACGAAAGGAAAGTTCTCTAAACGGGAGAAAAAAC 373 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 557 GTGAACGCAAGAAACAGACTGTGAAAACGAAAGGAAAGTTCTCAAAACGGGAGAAAAAAA 616 Query 374 CGGATAAGCCACCTGTTGAAGCTCCTTATGTGCCTCCTAGGCTGCAAAGATTGGCAAAGG 433 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 617 CAGATAAGCCACCTGTTGAAGCTCCTTATGTGCCTCCTAGGCTGAAAAGATTGGCAAAGG 676 Query 434 GATTGCCTGAGAAGACGGTCGACATATTCGAAGGGATGACACTACTTGAGCTCTCCAAGC 493 ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 677 GATTGCCTGGGAAGACTGTCGACATATTTGAAGGGATGACACTACTTGAGCTCTCCAAGC 736 Query 494 GTACTGGTGAGTCAGTGGCAGTTTTGCAGAGCATTCTCATCAATGTTGGTGAAACTTTTA 553 ||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct 737 GTACTGGTGAGTCTGTGGCGGTTTTGCAGAGCATTCTCATTAATGTTGGGGAAACTTTTA 796 Query 554 GTTCAGAATTCGACACAATCAGTGTTGATGTCGCCGAGCTTCTTGCAATGGAAATCGGAA 613 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 797 GTTCAGAATTCGACACAATCAGTGTTGATGTCGCCGAGCTTCTTGCTATGGAAATCGGGA 856 Query 614 TTAACGTAAGGAGGCAACATTCTACAGAAGGATCTGATATTCTTCCACGGCCTCCAGTTG 673 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 857 TCAACGTAAGGAGGCAACATTCTACAGAAGGATCTGAGATTCTTCCACGGCCTCCAGTTG 916 Query 674 TAACCGTAATGGGCCATGTCGATCATGGAAAAACCTCGTTGTTGGATGCATTAAGAAACA 733 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 917 TAACCGTAATGGGCCATGTCGATCATGGAAAAACCTCGTTGCTGGATGCTTTAAGAAACA 976 Query 734 CCTCTGTTGCGGCAAGAGAAGCTGGTGGAATCACTCAGCATGTGGGTGCTTTCGTGGTGG 793 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 977 CCTCTGTTGCAGCAAGAGAAGCTGGTGGAATCACTCAGCACGTGGGTGCTTTCGTGGTAG 1036 Query 794 GCATGCCGGATTCTGGCACTTCAATCACATTTCTCGACACACCTGGCCATGCCGCTTTCA 853 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1037 GCATGCCGGATTCTGGCACTTCAATCACATTCCTCGACACACCTGGCCATGCCGCTTTCA 1096 Query 854 GCGAGATGCGAGCTCGGGGTGCTGCTGTGACTGATATAGTCGTCTTGGTGGTTGCTGCTG 913 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1097 GCGAGATGCGAGCTCGGGGAGCTGCTGTGACTGATATAGTCGTCTTGGTGGTTGCTGCTG 1156 Query 914 ATGATGGGGTAATGCCACAGACACTCGAGGCTATTGCGCACGCTAGATCAGCGAATGTGC 973 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1157 ATGATGGGGTAATGCCGCAGACACTCGAGGCTATTGCGCACGCTAGATCAGCGAATGTTC 1216 Query 974 CGATTGTGGTTGCGATCAATAAATGCGATAAACCAGGAGCTAATCCGGAAAAAGTTAAGT 1033 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1217 CGGTTGTGGTTGCGATCAATAAATGCGATAAACCTGGAGCTAATCCGGAAAAAGTTAAGT 1276 Query 1034 ACCAGCTCACGTCTGAAGGGATAGAGCTCGAGGATATTGGAGGAAATGTTCAGGCTGTTG 1093 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1277 ACCAGCTCACGTCTGAGGGGATAGAGCTTGAGGATATTGGAGGAAATGTTCAGGCTGTTG 1336 Query 1094 AGGTATCTGCAGCGAAGAATACAGGGCTAGACAAATTAGAAGAAGCTCTGCTTCTCCAAG 1153 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1337 AGGTATCTGCAGCGAAGAGTACAGGGCTAGACAAATTAGAAGAAGCTCTGCTTCTCCAAG 1396 Query 1154 CCGTGGATATGGACCTCAAAGCACGTGTGGATGGACCAGCTCAAGCATATGTGGTGGAGG 1213 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1397 CTGTGGATATGGACCTGAAAGCACGTGTGGATGGACCAGCTCAAGCATATGTGGTGGAGG 1456 Query 1214 CTCGGCTTGACAAAGGCCGTGGACCGTTAGCCACCATAATTGTAAAAGCCGGAACCTTGG 1273 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1457 CTCGGCTTGACAAAGGCCGTGGACCGTTAGCCACCATTATTGTAAAAGCCGGAACTTTGG 1516 Query 1274 TGAGGGGTCAGCATGTAGTCATCGGGTCTCAGTGGGGAAGACTCAGGGCTATTCGGGACA 1333 | |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1517 TTAGGGGTCAGCATGTAGTCATTGGGTGTCAGTGGGGAAGACTCAGGGCTATTCGGGACA 1576 Query 1334 TGATCGGTAAGACAACAGACCGAGCAACACCAGCGATGCCCGTCGAGATTGAAGGGCTTA 1393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1577 TGATCGGTAAGACAACAGACCGAGCAACACCAGCGATGCCCGTCGAGATTGAAGGGCTTA 1636 Query 1394 AAGGTCTTCCAATGGCTGGCGACGATGTCATTGTGGTGGAATCAGAGGAACGCGCGAGGA 1453 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 1637 AAGGTCTTCCAATGGCTGGCGACGATGTGATTGTGGTGGAATCAGAGGAACGCGCAAGAA 1696 Query 1454 TGCTTAGCGAAGGGCGAAAAAGGAAATATGAAAAAGATCGGTTGTTAAAAGCAGAGGAAG 1513 |||| ||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 1697 TGCTGAGCGAAGGGAGGAAAAGAAAATATGAGAAAGATCGGTTGTTGAAAGCAGAGGAAG 1756 Query 1514 CGAGAATAGAGGAAGCCGCAGCGAGAATGGAAACAGAGTCTGAAGAAGGGTTTGTTCGGG 1573 ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1757 CGAGATTAGAGGAAGCAGCAGCGAGATTGGAAACAGAGTCTGAAGAAGGGTTTGTTCGGG 1816 Query 1574 TTGAATTACCGATAGTTGTGAAATCGGATGTGCAAGGGACTGCACAGGCTGTTGCTGATG 1633 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1817 TTGAATTACCGATAGTAGTGAAATCAGATGTGCAAGGGACTGCACAGGCTGTTGCTGATG 1876 Query 1634 CGTTAAGAACATTAAATAGCCCACAGGTATTTGTGAACATTGTTCATAGCGGAGTGGGAG 1693 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 1877 CGTTAAGAACATTAAATAGCCCACAGGTGTCTGTGAACATTGTTCATAGCGGAGTGGGAG 1936 Query 1694 CAATTTCTCACTCTGATTTGGACTTGGCACAAGCTTGCGGTGCATGTATCGTTGGGTTTA 1753 |||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1937 CAATATCTCACTCTGATTTGGACTTGGCACAAGCTTGCGGTGCGTGTATTGTTGGGTTTA 1996 Query 1754 ACGTTAAGGGTGGAAGTTCTGCTAATCTTTCTGCGGCTCAAGCCAGCGTCAAGGTATTCC 1813 ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1997 ACGTTAAGGGTGGAAGTACTGGTAATCTTTCTGCGGCTCAAGGCAGCGTCAAGGTATTCC 2056 Query 1814 ACCACCGAGTGATATACCATTTGCTTGAAGACATCGGGAACTTGATCGTAGAAAAGGCAC 1873 | ||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 2057 ATCACCGTGTGATATACCATTTACTCGAAGACATCGGGAACTTGATCGTAGAAAAAGCAC 2116 Query 1874 CAGGAGTTTCGGAGATGGAGGTGGCTGGTGAAGCCGAGGTACTTAGCATTTTCAAAATCT 1933 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| Sbjct 2117 CAGGAGTTTCGGAGATGGAGGTGTCTGGTGAAGCCGAGGTACTTAGCATATTCAAGATCT 2176 Query 1934 TAGGAAAGAGAAGAACCGAAGAAGATGGAGTAAGCATTGCAGGTTGCAAAGTAATGGATG 1993 ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| Sbjct 2177 TAGGAAAGAGAAGAACCGAAGAAGATGGAGTAAACATCGCAGGTTGCAAAGTGATGGATG 2236 Query 1994 GTCGGGTATGTAGAAGTGGACTCATGAGGCTGTTGCGGAGCGGAGAAGTGGTCTTTGAAG 2053 |||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||| Sbjct 2237 GTCGGGTATGTAGAAGCGGACTCATGAGGCTGTTACGAAGCGGAGAAGTGGTCTTCGAAG 2296 Query 2054 GCTCGTGCGCGTCGCTGAAACGAGAGAAACAAGACGTGGAACAGGTAGGGAAAGGGAACG 2113 ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 2297 GCTCGTGTGCGTCGCTGAAACGGGAGAAACAAGACGTGGAACAGGTCGGGAAAGGGAACG 2356 Query 2114 AGTGTGGACTTGTGATGGGAGATTGGAATGATTTTAGAGTCGGAGATGTGATTCAGTGCA 2173 ||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| |||| Sbjct 2357 AGTGTGGGCTTGTGTTTGGAGATTGGAATGATTTTAGAGTGGGAGATGTGATTCAATGCA 2416 Query 2174 TGGAGCCAGTCATTAGGAAACCTAAATTCATTTCCTCTGAGAGTGGAGCTGTGAGAATTG 2233 |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 2417 TGGAACCAGTCATTAGAAAACCTAAATTCATATCCTCTGAGAGTGGAGCTGTGAGAATTG 2476 Query 2234 AATGCTGAGAT--CTACTAAACCTTAAAACTCCTTAA--AATTAAATCTGATTGTTTAGG 2289 |||||||||| |||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 2477 AATGCTGAGAGAGCTACTAAACCGTAAAACTCCTAAATCAATTAAATCTGATTGTTTAGG 2536 Query 2290 ATATTGAATTTTGCCTGTTACGCTGATTATTTTTTCTTTTGATAT--T-GAAAACTATCT 2346 ||||||| ||||| | |||||||||| ||| ||||||||| ||| | ||||||| ||| Sbjct 2537 ATATTGATTTTTGG-TCTTACGCTGATGATTATTTCTTTTGTTATACTAGAAAACTGTCT 2595 Query 2347 TATTATCAAAAGAAA 2361 ||||||||||||||| Sbjct 2596 TATTATCAAAAGAAA 2610 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117218272575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5