BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489955
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11180.1 | Symbols: | Disease resistance-responsive (dirige... 961 0.0
AT4G11210.1 | Symbols: | Disease resistance-responsive (dirige... 375 2e-103
> AT4G11180.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:6820033-6820747 FORWARD
LENGTH=715
Length=715
Score = 961 bits (520), Expect = 0.0
Identities = 626/677 (92%), Gaps = 7/677 (1%)
Strand=Plus/Plus
Query 1 ACTTAACACTCTAACAATGGTAAATCAAATCTACAAACAAGTATTTTCCTTCTTCTTATC 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTAACACTCTAACAATGACAAATCAAATCTACAAACAAGTATTTTCCTTCTTCTTATC 60
Query 61 CGTTTTACTTCTCCAATCCAGTACTGTCTCATACGTCCGAAAGTCATTCGACCTAAACAA 120
|||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||
Sbjct 61 CGTTTTACTTCTCCAATCTAGTACTGTCTCATACGTCCCAAAGTCATTTGACCTAAAGAA 120
Query 121 ACCATGCAGGCATTTCGTACTTTACCTCCATAACATCGCCTACGATGATGATAACGCGGC 180
|||||||| ||||||||| || ||||||||||||||||||||||| | ||||||||||||
Sbjct 121 ACCATGCAAGCATTTCGTCCTCTACCTCCATAACATCGCCTACGACGGTGATAACGCGGC 180
Query 181 TAATGCCACAGCAGCAACAATCGTGAACCCTTTGGGACTAGGGGATTATAG-TTTCGGGA 239
|||||||| ||||||||||||||||| |||||||||||||||||| |||| ||| ||||
Sbjct 181 AAATGCCACGGCAGCAACAATCGTGAAACCTTTGGGACTAGGGGATCATAGTTTTGGGGA 240
Query 240 GGGTAATTAT-ATGTGACGACCCTGTAACAATGGACCAGAACTATCTCTCGAAACCAGTG 298
| |||| || || | || ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 241 -GTTAATCATAAT-TAACAACCCTGTGACACTGGACCAGAACTATCTCTCGAAACCAGTG 298
Query 299 GCTCGTGCCCAAGGATTCTACTTCTACAACAAGAAGACGAATTTCAACACTTGGGTCGCT 358
|||||||||||||| |||||||| ||||||| |||||| |||| |||| |||||||||||
Sbjct 299 GCTCGTGCCCAAGGCTTCTACTTTTACAACATGAAGACAAATTACAACGCTTGGGTCGCT 358
Query 359 TGGACATTGGTATTCAATTCGACAAAGCACAAAGGGACATTTACCATAATGGATGCAAAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGACATTGGTATTCAATTCGACAAAGCACAAAGGGACATTTACCATAATGGATGCAAAT 418
Query 419 CCTTATGGTATGGAGCCGACCAGAGACCTAGCGATCGTAGGTGGGACTGGTGACTTCCTC 478
|||| |||| || ||||| ||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 419 CCTTTTGGTTTGCAGCCGGCCAGAGATCTATCGATCGTTGGTGGGACTGGTGACTTCCTC 478
Query 479 ATGACTCGTGGGATCGCTACGTTGAAGACCAAACTCTCTCAAGGCAGTAAGTATTTTTGT 538
|||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 479 ATGACTCGTGGGATCGCTACATTCAAGACCAAACTCACTCAAGGCAGTAAGTATTTTTGT 538
Query 539 TTGGAAATGAATATTAAACTTTATGAATGTTACTAATATGTGTGTCTTGGGATTGATGTT 598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 539 GTGGAAATGAATATTAAACTTTATGAATGTTACTAATATGTGT--CTTGGGATTGATCTT 596
Query 599 TGTGTGTTGGCATTTTATTTTCTTTATTTGTTTT-AGTTGATGTTGTTCCAAATTTCAAT 657
||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 597 CGTGTGTTGGCAGTTTATTTGCTTTCTTTGTTTTTAGTTGATGTTGTTCCAAATTTCAAT 656
Query 658 AAATGGTATTGAAATAT 674
|||||||||||||||||
Sbjct 657 AAATGGTATTGAAATAT 673
> AT4G11210.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr4:6832691-6833245 FORWARD
LENGTH=555
Length=555
Score = 375 bits (203), Expect = 2e-103
Identities = 403/496 (81%), Gaps = 27/496 (5%)
Strand=Plus/Plus
Query 51 TCTTCTTATCCGTTTTACTTCT-CCAATCCA-GTACTGTCTCATAC-GTCCGAAAGTCAT 107
||| ||| || ||||||||| | ||||| || ||| ||||||| | ||| ||| |||
Sbjct 32 TCTGCTTGTCTGTTTTACTT-TGCCAAT-CATATACGGTCTCAT-CTTTCCAAAAATCAC 88
Query 108 TCGACCTAAAC-AAACCATGCAGGCATTTCGTACTTTACCTCCATAACATCGCCTACGAT 166
| ||||| | | |||||||||| || |||||| || |||||||| |||| || ||||||
Sbjct 89 TAGACCT-AGCGAAACCATGCAAGCGTTTCGTCCTCCACCTCCATGACATTGCGTACGAT 147
Query 167 GATGATAACGCGGCTAATGCCACAG-CAGCAACAATCGTGAACCCTTTGGGACTAGGGGA 225
| |||||||||||||||||| || | ||||| |||| ||||| ||||| |||||||| ||
Sbjct 148 GGTGATAACGCGGCTAATGCAAC-GTCAGCAGCAATTGTGAATCCTTTAGGACTAGGAGA 206
Query 226 -TTATAGTTTCGGGAGGGTAATTA-TATGTGACGACCCTGTAACAATGGACCAGAACTAT 283
|| ||||| |||| | | | | |||| ||||||||||| ||||||||||||||||||
Sbjct 207 CTT-CAGTTTTGGGAAGTTTGTGATTATG-GACGACCCTGTGACAATGGACCAGAACTAT 264
Query 284 CTCTCGAAACCAGTGGCTCGTGCCCAAGGATTCTACTTCTACAACAAG-AAGACGA-ATT 341
||||||||||| |||||||||| ||||| |||| || |||| || | ||| | | ||
Sbjct 265 CTCTCGAAACCCGTGGCTCGTGTTCAAGGCTTCTTCTGCTACCACG-GTAAGGCAACATA 323
Query 342 TCAACACTTGGGTCGCTTGGACATTGGTATTCAATTCGACA-AAGCACAAAGGGACATTT 400
| || ||||| ||||||||||| |||||||||| || ||| || ||||||||| ||||
Sbjct 324 -CGACGCTTGGATCGCTTGGACAGTGGTATTCAACTCAACACAA-CACAAAGGGGCATTC 381
Query 401 ACCATAATGGATGCAAATCCTTATGGTATGGAGCCGACCAGAGACCTAGCGATCGTAGGT 460
|||||||||| || |||||| | | |||||||||||| ||||||||| ||||||| |||
Sbjct 382 ACCATAATGGGTGAAAATCCGT-T--TATGGAGCCGACTAGAGACCTACCGATCGTTGGT 438
Query 461 GGGACTGGTGACTTCCTCATGACTCGTGGGATCGCTACGTTGAA-GACCAAACTC-TCTC 518
||||||||||||||| |||||||||| |||||||||||||| || |||| | | | | |
Sbjct 439 GGGACTGGTGACTTCATCATGACTCGAGGGATCGCTACGTT-AACGACCGATCACAT-TG 496
Query 519 AAGGCAGTAAGTATTT 534
| ||||||||||||||
Sbjct 497 ACGGCAGTAAGTATTT 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5