BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489958
Length=2974
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11230.1 | Symbols: | Riboflavin synthase-like superfamily ... 3644 0.0
> AT4G11230.1 | Symbols: | Riboflavin synthase-like superfamily
protein | chr4:6840491-6845591 REVERSE LENGTH=3130
Length=3130
Score = 3644 bits (1973), Expect = 0.0
Identities = 2415/2620 (92%), Gaps = 63/2620 (2%)
Strand=Plus/Plus
Query 360 TATTCGTCTCGGTCTGCACCGGAGCCGGTGGTTCCTA-A-TGTAGTAGATTTTACGGATC 417
||||||||||||||||||||||| ||||||||||| | | | || || |||| |||
Sbjct 377 TATTCGTCTCGGTCTGCACCGGAACCGGTGGTTCC-ACACAG-AGGCGAAATTACCGATT 434
Query 418 CTGCTGTTCTCTGTCGCTCTTTAACACAACGATTAACAAAG-TCTAATC------GATCG 470
| | | |||| ||| ||||| | || ||| ||| || |||||| |||||
Sbjct 435 CGGTTAATCTCCCTCGAGCTTTATCTCAGCGACCAAC-TAGACCTAATCGGGATGGATCG 493
Query 471 TGTACAGAGAGAGCGATTCATGGTTTGAAATTCATAAGCAGCAAAGACAATCGAATCGCT 530
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 494 GGTACAGAGAGAGCGATTCATGGTTTGAAATTCATAAGCAGCAAAGAAAATGGAATCGTT 553
Query 531 AATTGGAGA-GATGTTCAAAACAATTTCGCTAATCTTTCTAAAGATGGTTATCTTTGTC- 588
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 554 GATTGGA-ACGATGTTCAAAACAATTTCGCTCATCTTTCTAAAGATGGTTATCTTT-TCA 611
Query 589 GAAGTGATTTTGCTAATTGCATAGGTTTGGAGAATGAAAATTCGAAAGAATTCGCAGATG 648
||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct 612 AAAGTGATTTTGCTCATTGCATAGGTTTGGAGAATGAAAATTCCAAAGAGTTTGCAGACG 671
Query 649 AGTTGTTCGACGCAATGTGTAGGAGAAGAAGATTAATGGTTGATAAGATCAATCTTCAAG 708
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 672 AGTTGTTCGACGCATTGTGTAGGAGAAGAAGAATAATGGTTGATAAGATCAATCTTCAAG 731
Query 709 AACTATATGAGTTTTGGTACCAAATTACTGACGAAAGCTTCGATTCTCGTCTCCAAATCT 768
|| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 732 AATTATACGAGTTTTGGTACCAAATTACAGACGAAAGCTTCGATTCTCGTCTTCAAATCT 791
Query 769 TCTTCGACATGGTTAAAAATGGAGATGGTCGAATCACAGAGAATGAAGTAAAAGAGATCA 828
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 792 TCTTCAACATGGTTAAAAATGGAGATGGTAGAATCACAGAGAATGAAGTAAAAGAGATTA 851
Query 829 TTATACTAAGTGCATCAGCAAATAATCTATTGAGGTTAAGAGAACGAGCAGAGGAATATG 888
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||
Sbjct 852 TTATACTAAGTGCATCGGCAAATAATCTATCGAGGTTGCGAGAACGAGCAGAGGAATATG 911
Query 889 CAGCACTGATCATGGAAGAACTTGCACCGGATGGGCTCTATTCTCAGTACATAGAGTTAA 948
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 912 CCGCACTGATCATGGAAGAACTTGCACCAGATGGACTCTATTCTCAGTACATAGAGTTAA 971
Query 949 AGGACCTAGAGATGCTACTACTAGAGAAGGACATATCTCATAGTTACAGCCAACCGTTCA 1008
||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 972 AGGACCTAGAGATACTGCTACTAGAGAAGGACATATCTCATAGTTACAGCCTACCGTTCA 1031
Query 1009 GTCAGACGAGCCGAGCCTTAAGCCAAAACCTAAAGGATACAAGATGGGGAATAAGTAGGA 1068
| ||||||||||||||||||||||| ||||||||||||| ||||||| |||| || || |
Sbjct 1032 GCCAGACGAGCCGAGCCTTAAGCCAGAACCTAAAGGATAGAAGATGGAGAATGAGCAGAA 1091
Query 1069 ACTTGCTTTACTCTTTGCAAGACAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTAG 1128
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1092 ACTTGCTTTACTCTTTGCAAGATAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTTG 1151
Query 1129 TGATCATGGGCTGGTTGTTTATGTGGAAATGCTATCAGTACAAACGCAAAGACGCATTCC 1188
||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1152 TGATCATGGCCTGGTTATTTATGTGGAAATGCTATCAGTACAAACACAAAGACGCATTCC 1211
Query 1189 ATGTAATGGGTTACTGCCTTGTCATGGCGAAAGGTGCAGCTGAGACACTGAAATTCAATA 1248
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1212 ATGTAATGGGTTACTGCCTTGTCATGGCAAAAGGCGCAGCTGAGACACTGAAATTCAACA 1271
Query 1249 TGGCTCTTATCCTTTTGCCGGTTTGTAGAAATACCATCACCTATCTCAGATCCACCGCTT 1308
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1272 TGGCTCTTATTCTTTTGCCGGTCTGTAGAAATACCATCACCTATCTCAGATCCACCGCTT 1331
Query 1309 TGTGCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGACGATCTCTGTAGCAA 1368
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TGTCCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGACGATCTCTGTAGCAA 1391
Query 1369 TCATTATTGCAATGCTTCTTCATGCATCCAGCCACCTCGCTTGTGACTTCCCGAGGATTC 1428
|||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 1392 TCATTAGTGCAATGCTTCTTCATGCAACCAGCCACCTCGCCTGTGACTTCCCAAGGATTC 1451
Query 1429 TAACATCTACTGAGACTGATTACAAAAGATACTTGGTTAAGTACTTTGGTATTACCAGAC 1488
|| |||||||||| || ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1452 TAGCATCTACTGATACAGATTACAAAAGATACTTGGTTAAGTACTTTGGTGTGACCAGAC 1511
Query 1489 CCACATACTTTGACTTGGTGAATAGTCCTGTAGGAATCACTGGTTTTATAATGGTTGCTT 1548
|||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 1512 CCACATACTTTGGTTTGGTGAATACTCCTGTGGGAATCACTGGAATTATAATGGTTGCTT 1571
Query 1549 TTATGGTAATTGCATTCATATTAGCCAGTCGAAGATGCAGGCGGAACCTT-ACTAAGTTG 1607
||||| |||||||||||| |||||||||| |||||||||||||||| ||| |||||||||
Sbjct 1572 TTATGTTAATTGCATTCACATTAGCCAGTAGAAGATGCAGGCGGAA-CTTAACTAAGTTG 1630
Query 1608 CCAAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTT 1667
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 CCGAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTT 1690
Query 1668 CTAACTGTTTACGTCCTTTTAGTCATCCACGGTGTTTCCCTCTATCTCGAGCATAAATGG 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 CTAACTGTTTACGTCCTTTTAGTCATCCACGGTGTTTCCCTCTATCTCGAGCATAAATGG 1750
Query 1728 TACCGCAAAACGATATGGATGTATCTTGCTGTACCAGTTTTACTCTATATTGGTGAAAGG 1787
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1751 TACCGCAAAACGGTATGGATGTATCTTGCTGTACCAGTTTTACTCTATGTTGGTGAGAGG 1810
Query 1788 ATCCTTAGATTTTTTCGTTCCAGGCTTTACACCGTTGAAATCTGCAAGGTTGTAATTTAT 1847
||| |||||||||| ||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 1811 ATCTTTAGATTTTTCCGTTCCAGGCTTTACACAGTCGAAATCTGTAAGGTTGTAATTTAT 1870
Query 1848 CCCGGAAACGTTGTTGTACTACGCATGACTAAGCCTACATCATTTGATTACAAGAGCGGA 1907
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1871 CCCGGAAACGTTGTTGTGCTACGCATGTCTAAGCCTACATCATTTGATTACAAGAGTGGA 1930
Query 1908 CAATATGTATTTGTTCAGTGTCC-TGCAGTGTCAAAATTTGAGTGGCATCCATTTTCTAT 1966
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 1931 CAATATGTATTTGTTCAGTGTCCAT-CAGTATCAAAATTTGAGTGGCATCCATTTTCTAT 1989
Query 1967 TACGTCTTCCCCTGGAGATGATTATCTCAGCATTCACATTCGCCAGCGTGGTGATTGGAC 2026
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1990 TACTTCTTCCCCTGGAGATGATTATCTCAGCATTCACATTCGTCAGCGCGGTGATTGGAC 2049
Query 2027 AGAAGGGATTAAGAAGGCATTTTCAGTGGTATGTCAAGCCCCTGAAGCTGGAAAAAGCGG 2086
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2050 AGAAGGGATTAAGAAGGCATTCTCAGTGGTATGTCATGCCCCTGAAGCTGGAAAAAGCGG 2109
Query 2087 ACTTCTCAGAGCAGACGGACCAAACCAAAGAAGTTTTCCAGAGCTGTTGATAGATGGACC 2146
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 ACTTCTCAGAGCAGATGTACCAAACCAAAGAAGTTTTCCAGAGCTGTTGATAGATGGACC 2169
Query 2147 TTATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTACTACTCGTTGGCCTTGG 2206
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2170 TTATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTATTACTGGTTGGCCTTGG 2229
Query 2207 AATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAACACCATTGTTAAGCA 2266
||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 2230 AATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAATAACATTATTAAGCA 2289
Query 2267 ACAAGAACAAGCTGAATGCCTCTCAGGTAGTTGTAGTAACAGCAACATCTCATCTGATCA 2326
||| ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 2290 ACAGGAACAAGCTGAATGCATCTCAGGTAGTTGTAGTAACAGCAACATCTCGTCGGATCA 2349
Query 2327 CAGTTTCAGTTGCTTAAACTCGGAAGCT-CGGAGTCGGATTCCCCAAACTCAACGGAAGA 2385
||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||
Sbjct 2350 CAGTTTCAGTTGCTTAAACTCAGAAGCTGCG-AGTCGGATTCCGCAAACTCAACGGAAGA 2408
Query 2386 CGTTGAATACTAAGAACGCTTACTTTTATTGGGTAACACGAGAACAAGGCTCGTTCGATT 2445
|| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2409 CGCTGAATACCAAGAATGCTTACTTTTACTGGGTAACACGAGAACAAGGCTCGTTCGATT 2468
Query 2446 GGTTCAAAGATATCATGAACGAAATTGCTGATTCAGATAGAAAGGGTGTTATTGAGATGC 2505
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2469 GGTTCAAAGAAATCATGAACGAGATTGCTGATTCAGATAGAAAGGGTGTTATTGAGATGC 2528
Query 2506 ACAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACCATGA 2565
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2529 ACAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACTATGA 2588
Query 2566 TCCAAACGCTAAACCACGCTAAAAATGGCGT--A-A--------GGA-C-A--------- 2603
|||||||| ||||||| || ||||||||||| | | ||| | |
Sbjct 2589 TCCAAACGTTAAACCATGCCAAAAATGGCGTCGACATTTTTTCAGGAACCAAGGTAAGGA 2648
Query 2604 CA--TTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGA 2661
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2649 CACATTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGA 2708
Query 2662 ACGCAAGAATTGGAGTGTTCTATTGTGGAGTACCGAGTTTGGGGAAGGAACTTTCTACAC 2721
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 2709 ACGCAAGAATTGGAGTGTTCTATTGTGGAGTTCCAAGTTTGGGGAAGGAACTTTCAACAC 2768
Query 2722 TCTGCCATGAATTTAACCAGACGGGAATTTCCAGGTTCGAGTTCCACAAAGAACAGTTCT 2781
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 2769 TCTGCCATGAATTTAACCAGACGGGAATTACCAGGTTCGATTTCCACAAAGAACAGTTCT 2828
Query 2782 AACT---AA-----T----CCCCCACGATTATGGTTTTT-GAATGAATGAATCAATGTTC 2828
|||| || | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 2829 AACTGGTAAAAGGATTAATCCCCCACGATTATGGTTTTTTGAATGAATGAATCAATGTTC 2888
Query 2829 ATGTTCATA-TA-TATCCTTCTTGTTGTGTTTTCTTTTTCGTTTTGTGTATCATAA-TAC 2885
|||||| | | |||||| |||||||||||||||||| |||||||||||||| || |||
Sbjct 2889 ATGTTCGTTCTCGTATCCTACTTGTTGTGTTTTCTTTT-CGTTTTGTGTATCACAAATAC 2947
Query 2886 CAACTTTTAACCATTTCATCTAGACTAGGACTGTTAAAAA 2925
|||||||||||||||||||||||| |||||||||||||||
Sbjct 2948 CAACTTTTAACCATTTCATCTAGAGTAGGACTGTTAAAAA 2987
Score = 189 bits (102), Expect = 1e-46
Identities = 180/214 (84%), Gaps = 20/214 (9%)
Strand=Plus/Plus
Query 1 AAATGTCAATGTCATTTTCCGGCGGGACTCACGACGATCGTTGGGGTTCCGATTT-GACT 59
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||
Sbjct 3 AAATGTCAATGTCATTTTCCGGCGGGACTCACAACGATCGTTGGGGCTCCGATTTAG-CT 61
Query 60 TCCGCCGGAGAATTTACCCAAAGCTTTCCATCGTTTCCAGCAAC-T--T-AC--TCACC- 112
|||||||||||||| ||||||||||||||||| || |||||||| | | || |||||
Sbjct 62 TCCGCCGGAGAATTCACCCAAAGCTTTCCATCCTTACCAGCAACATACTCACCCTCACCC 121
Query 113 T--TCCGAC---------GGCGAAGAGCTCGTAGAAGTAACAATCGAATTCCCAAGCGGC 161
| ||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 122 TCCTCCTCCTCCTCCTCCGGCGAAGAGCTCCTAGAAGTAACAATCGAATTCCCAAGCGGC 181
Query 162 GTACTATTAAACATCGAATCTGTTACCAGCACCG 195
||| || |||||||||| || |||||| | ||||
Sbjct 182 GTAATAATAAACATCGACTCCGTTACCGGAACCG 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147841981021
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5