BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489958 Length=2974 Score E Sequences producing significant alignments: (Bits) Value AT4G11230.1 | Symbols: | Riboflavin synthase-like superfamily ... 3644 0.0 > AT4G11230.1 | Symbols: | Riboflavin synthase-like superfamily protein | chr4:6840491-6845591 REVERSE LENGTH=3130 Length=3130 Score = 3644 bits (1973), Expect = 0.0 Identities = 2415/2620 (92%), Gaps = 63/2620 (2%) Strand=Plus/Plus Query 360 TATTCGTCTCGGTCTGCACCGGAGCCGGTGGTTCCTA-A-TGTAGTAGATTTTACGGATC 417 ||||||||||||||||||||||| ||||||||||| | | | || || |||| ||| Sbjct 377 TATTCGTCTCGGTCTGCACCGGAACCGGTGGTTCC-ACACAG-AGGCGAAATTACCGATT 434 Query 418 CTGCTGTTCTCTGTCGCTCTTTAACACAACGATTAACAAAG-TCTAATC------GATCG 470 | | | |||| ||| ||||| | || ||| ||| || |||||| ||||| Sbjct 435 CGGTTAATCTCCCTCGAGCTTTATCTCAGCGACCAAC-TAGACCTAATCGGGATGGATCG 493 Query 471 TGTACAGAGAGAGCGATTCATGGTTTGAAATTCATAAGCAGCAAAGACAATCGAATCGCT 530 |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 494 GGTACAGAGAGAGCGATTCATGGTTTGAAATTCATAAGCAGCAAAGAAAATGGAATCGTT 553 Query 531 AATTGGAGA-GATGTTCAAAACAATTTCGCTAATCTTTCTAAAGATGGTTATCTTTGTC- 588 |||||| | ||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 554 GATTGGA-ACGATGTTCAAAACAATTTCGCTCATCTTTCTAAAGATGGTTATCTTT-TCA 611 Query 589 GAAGTGATTTTGCTAATTGCATAGGTTTGGAGAATGAAAATTCGAAAGAATTCGCAGATG 648 ||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||| | Sbjct 612 AAAGTGATTTTGCTCATTGCATAGGTTTGGAGAATGAAAATTCCAAAGAGTTTGCAGACG 671 Query 649 AGTTGTTCGACGCAATGTGTAGGAGAAGAAGATTAATGGTTGATAAGATCAATCTTCAAG 708 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 672 AGTTGTTCGACGCATTGTGTAGGAGAAGAAGAATAATGGTTGATAAGATCAATCTTCAAG 731 Query 709 AACTATATGAGTTTTGGTACCAAATTACTGACGAAAGCTTCGATTCTCGTCTCCAAATCT 768 || |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 732 AATTATACGAGTTTTGGTACCAAATTACAGACGAAAGCTTCGATTCTCGTCTTCAAATCT 791 Query 769 TCTTCGACATGGTTAAAAATGGAGATGGTCGAATCACAGAGAATGAAGTAAAAGAGATCA 828 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 792 TCTTCAACATGGTTAAAAATGGAGATGGTAGAATCACAGAGAATGAAGTAAAAGAGATTA 851 Query 829 TTATACTAAGTGCATCAGCAAATAATCTATTGAGGTTAAGAGAACGAGCAGAGGAATATG 888 |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct 852 TTATACTAAGTGCATCGGCAAATAATCTATCGAGGTTGCGAGAACGAGCAGAGGAATATG 911 Query 889 CAGCACTGATCATGGAAGAACTTGCACCGGATGGGCTCTATTCTCAGTACATAGAGTTAA 948 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 912 CCGCACTGATCATGGAAGAACTTGCACCAGATGGACTCTATTCTCAGTACATAGAGTTAA 971 Query 949 AGGACCTAGAGATGCTACTACTAGAGAAGGACATATCTCATAGTTACAGCCAACCGTTCA 1008 ||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 972 AGGACCTAGAGATACTGCTACTAGAGAAGGACATATCTCATAGTTACAGCCTACCGTTCA 1031 Query 1009 GTCAGACGAGCCGAGCCTTAAGCCAAAACCTAAAGGATACAAGATGGGGAATAAGTAGGA 1068 | ||||||||||||||||||||||| ||||||||||||| ||||||| |||| || || | Sbjct 1032 GCCAGACGAGCCGAGCCTTAAGCCAGAACCTAAAGGATAGAAGATGGAGAATGAGCAGAA 1091 Query 1069 ACTTGCTTTACTCTTTGCAAGACAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTAG 1128 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1092 ACTTGCTTTACTCTTTGCAAGATAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTTG 1151 Query 1129 TGATCATGGGCTGGTTGTTTATGTGGAAATGCTATCAGTACAAACGCAAAGACGCATTCC 1188 ||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 1152 TGATCATGGCCTGGTTATTTATGTGGAAATGCTATCAGTACAAACACAAAGACGCATTCC 1211 Query 1189 ATGTAATGGGTTACTGCCTTGTCATGGCGAAAGGTGCAGCTGAGACACTGAAATTCAATA 1248 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 1212 ATGTAATGGGTTACTGCCTTGTCATGGCAAAAGGCGCAGCTGAGACACTGAAATTCAACA 1271 Query 1249 TGGCTCTTATCCTTTTGCCGGTTTGTAGAAATACCATCACCTATCTCAGATCCACCGCTT 1308 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1272 TGGCTCTTATTCTTTTGCCGGTCTGTAGAAATACCATCACCTATCTCAGATCCACCGCTT 1331 Query 1309 TGTGCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGACGATCTCTGTAGCAA 1368 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1332 TGTCCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGACGATCTCTGTAGCAA 1391 Query 1369 TCATTATTGCAATGCTTCTTCATGCATCCAGCCACCTCGCTTGTGACTTCCCGAGGATTC 1428 |||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| Sbjct 1392 TCATTAGTGCAATGCTTCTTCATGCAACCAGCCACCTCGCCTGTGACTTCCCAAGGATTC 1451 Query 1429 TAACATCTACTGAGACTGATTACAAAAGATACTTGGTTAAGTACTTTGGTATTACCAGAC 1488 || |||||||||| || ||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1452 TAGCATCTACTGATACAGATTACAAAAGATACTTGGTTAAGTACTTTGGTGTGACCAGAC 1511 Query 1489 CCACATACTTTGACTTGGTGAATAGTCCTGTAGGAATCACTGGTTTTATAATGGTTGCTT 1548 |||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 1512 CCACATACTTTGGTTTGGTGAATACTCCTGTGGGAATCACTGGAATTATAATGGTTGCTT 1571 Query 1549 TTATGGTAATTGCATTCATATTAGCCAGTCGAAGATGCAGGCGGAACCTT-ACTAAGTTG 1607 ||||| |||||||||||| |||||||||| |||||||||||||||| ||| ||||||||| Sbjct 1572 TTATGTTAATTGCATTCACATTAGCCAGTAGAAGATGCAGGCGGAA-CTTAACTAAGTTG 1630 Query 1608 CCAAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTT 1667 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1631 CCGAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTT 1690 Query 1668 CTAACTGTTTACGTCCTTTTAGTCATCCACGGTGTTTCCCTCTATCTCGAGCATAAATGG 1727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1691 CTAACTGTTTACGTCCTTTTAGTCATCCACGGTGTTTCCCTCTATCTCGAGCATAAATGG 1750 Query 1728 TACCGCAAAACGATATGGATGTATCTTGCTGTACCAGTTTTACTCTATATTGGTGAAAGG 1787 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1751 TACCGCAAAACGGTATGGATGTATCTTGCTGTACCAGTTTTACTCTATGTTGGTGAGAGG 1810 Query 1788 ATCCTTAGATTTTTTCGTTCCAGGCTTTACACCGTTGAAATCTGCAAGGTTGTAATTTAT 1847 ||| |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||| Sbjct 1811 ATCTTTAGATTTTTCCGTTCCAGGCTTTACACAGTCGAAATCTGTAAGGTTGTAATTTAT 1870 Query 1848 CCCGGAAACGTTGTTGTACTACGCATGACTAAGCCTACATCATTTGATTACAAGAGCGGA 1907 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1871 CCCGGAAACGTTGTTGTGCTACGCATGTCTAAGCCTACATCATTTGATTACAAGAGTGGA 1930 Query 1908 CAATATGTATTTGTTCAGTGTCC-TGCAGTGTCAAAATTTGAGTGGCATCCATTTTCTAT 1966 ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| Sbjct 1931 CAATATGTATTTGTTCAGTGTCCAT-CAGTATCAAAATTTGAGTGGCATCCATTTTCTAT 1989 Query 1967 TACGTCTTCCCCTGGAGATGATTATCTCAGCATTCACATTCGCCAGCGTGGTGATTGGAC 2026 ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1990 TACTTCTTCCCCTGGAGATGATTATCTCAGCATTCACATTCGTCAGCGCGGTGATTGGAC 2049 Query 2027 AGAAGGGATTAAGAAGGCATTTTCAGTGGTATGTCAAGCCCCTGAAGCTGGAAAAAGCGG 2086 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 2050 AGAAGGGATTAAGAAGGCATTCTCAGTGGTATGTCATGCCCCTGAAGCTGGAAAAAGCGG 2109 Query 2087 ACTTCTCAGAGCAGACGGACCAAACCAAAGAAGTTTTCCAGAGCTGTTGATAGATGGACC 2146 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 2110 ACTTCTCAGAGCAGATGTACCAAACCAAAGAAGTTTTCCAGAGCTGTTGATAGATGGACC 2169 Query 2147 TTATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTACTACTCGTTGGCCTTGG 2206 ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 2170 TTATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTATTACTGGTTGGCCTTGG 2229 Query 2207 AATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAACACCATTGTTAAGCA 2266 ||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| Sbjct 2230 AATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAATAACATTATTAAGCA 2289 Query 2267 ACAAGAACAAGCTGAATGCCTCTCAGGTAGTTGTAGTAACAGCAACATCTCATCTGATCA 2326 ||| ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| Sbjct 2290 ACAGGAACAAGCTGAATGCATCTCAGGTAGTTGTAGTAACAGCAACATCTCGTCGGATCA 2349 Query 2327 CAGTTTCAGTTGCTTAAACTCGGAAGCT-CGGAGTCGGATTCCCCAAACTCAACGGAAGA 2385 ||||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||| Sbjct 2350 CAGTTTCAGTTGCTTAAACTCAGAAGCTGCG-AGTCGGATTCCGCAAACTCAACGGAAGA 2408 Query 2386 CGTTGAATACTAAGAACGCTTACTTTTATTGGGTAACACGAGAACAAGGCTCGTTCGATT 2445 || ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2409 CGCTGAATACCAAGAATGCTTACTTTTACTGGGTAACACGAGAACAAGGCTCGTTCGATT 2468 Query 2446 GGTTCAAAGATATCATGAACGAAATTGCTGATTCAGATAGAAAGGGTGTTATTGAGATGC 2505 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2469 GGTTCAAAGAAATCATGAACGAGATTGCTGATTCAGATAGAAAGGGTGTTATTGAGATGC 2528 Query 2506 ACAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACCATGA 2565 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2529 ACAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACTATGA 2588 Query 2566 TCCAAACGCTAAACCACGCTAAAAATGGCGT--A-A--------GGA-C-A--------- 2603 |||||||| ||||||| || ||||||||||| | | ||| | | Sbjct 2589 TCCAAACGTTAAACCATGCCAAAAATGGCGTCGACATTTTTTCAGGAACCAAGGTAAGGA 2648 Query 2604 CA--TTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGA 2661 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2649 CACATTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGA 2708 Query 2662 ACGCAAGAATTGGAGTGTTCTATTGTGGAGTACCGAGTTTGGGGAAGGAACTTTCTACAC 2721 ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| Sbjct 2709 ACGCAAGAATTGGAGTGTTCTATTGTGGAGTTCCAAGTTTGGGGAAGGAACTTTCAACAC 2768 Query 2722 TCTGCCATGAATTTAACCAGACGGGAATTTCCAGGTTCGAGTTCCACAAAGAACAGTTCT 2781 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 2769 TCTGCCATGAATTTAACCAGACGGGAATTACCAGGTTCGATTTCCACAAAGAACAGTTCT 2828 Query 2782 AACT---AA-----T----CCCCCACGATTATGGTTTTT-GAATGAATGAATCAATGTTC 2828 |||| || | |||||||||||||||||||| |||||||||||||||||||| Sbjct 2829 AACTGGTAAAAGGATTAATCCCCCACGATTATGGTTTTTTGAATGAATGAATCAATGTTC 2888 Query 2829 ATGTTCATA-TA-TATCCTTCTTGTTGTGTTTTCTTTTTCGTTTTGTGTATCATAA-TAC 2885 |||||| | | |||||| |||||||||||||||||| |||||||||||||| || ||| Sbjct 2889 ATGTTCGTTCTCGTATCCTACTTGTTGTGTTTTCTTTT-CGTTTTGTGTATCACAAATAC 2947 Query 2886 CAACTTTTAACCATTTCATCTAGACTAGGACTGTTAAAAA 2925 |||||||||||||||||||||||| ||||||||||||||| Sbjct 2948 CAACTTTTAACCATTTCATCTAGAGTAGGACTGTTAAAAA 2987 Score = 189 bits (102), Expect = 1e-46 Identities = 180/214 (84%), Gaps = 20/214 (9%) Strand=Plus/Plus Query 1 AAATGTCAATGTCATTTTCCGGCGGGACTCACGACGATCGTTGGGGTTCCGATTT-GACT 59 |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | || Sbjct 3 AAATGTCAATGTCATTTTCCGGCGGGACTCACAACGATCGTTGGGGCTCCGATTTAG-CT 61 Query 60 TCCGCCGGAGAATTTACCCAAAGCTTTCCATCGTTTCCAGCAAC-T--T-AC--TCACC- 112 |||||||||||||| ||||||||||||||||| || |||||||| | | || ||||| Sbjct 62 TCCGCCGGAGAATTCACCCAAAGCTTTCCATCCTTACCAGCAACATACTCACCCTCACCC 121 Query 113 T--TCCGAC---------GGCGAAGAGCTCGTAGAAGTAACAATCGAATTCCCAAGCGGC 161 | ||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 122 TCCTCCTCCTCCTCCTCCGGCGAAGAGCTCCTAGAAGTAACAATCGAATTCCCAAGCGGC 181 Query 162 GTACTATTAAACATCGAATCTGTTACCAGCACCG 195 ||| || |||||||||| || |||||| | |||| Sbjct 182 GTAATAATAAACATCGACTCCGTTACCGGAACCG 215 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 147841981021 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5