BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489959
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11240.1 | Symbols: TOPP7 | Calcineurin-like metallo-phospho... 1781 0.0
> AT4G11240.1 | Symbols: TOPP7 | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr4:6847112-6849300 FORWARD
LENGTH=1458
Length=1458
Score = 1781 bits (964), Expect = 0.0
Identities = 1171/1266 (92%), Gaps = 34/1266 (3%)
Strand=Plus/Plus
Query 1 AATAATTACCGCGTTTATGA-AAAA-TTTCTAGGGTTTACGAAATTTGGG-----GT--C 51
||| |||||||||||||| | |||| |||||||||||||||||||||||| | |
Sbjct 1 AATTATTACCGCGTTTATTATAAAAGTTTCTAGGGTTTACGAAATTTGGGTCTCTCTCCC 60
Query 52 TCTCTCTACTTAACGCTCTCTGTATCTTCTTCTCCGTCAACGATACGAACCCAGAGACGC 111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCTACTTAACGCTCTCTGTATCTTCTTCTCCGTCAACGATACGAACCCAGAGACGT 120
Query 112 CGGCGGTGAAATA-AATCGTCGGTTCTCTCTGGATTCGTCAGGCGAGAATTTTCCGGTTT 170
||||||| ||| | ||||||||| ||||||||||||||| || |||||| |||||||| |
Sbjct 121 CGGCGGTTAAA-ACAATCGTCGGATCTCTCTGGATTCGTTAGACGAGAAGTTTCCGGTAT 179
Query 171 CTAATTTGTGTGTG-T-GAGAAAAAGATAGGGGTTGTTGCTTCGATGGACGAGACTTTAC 228
||||||| |||| | | |||| ||| || ||||||||||| ||||||| ||||||||||
Sbjct 180 CTAATTTCTGTGCGTTAGAGAGAAA-TTA-GGGTTGTTGCTACGATGGATGAGACTTTAC 237
Query 229 TCGACGATATAATACGGCGACTTTTGGCGACGAATAATGGAAGGACGGTGAAGCAAGCAC 288
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTGACGATATAATACGACGGCTTTTGGCGACGAATAATGGAAGGACGGTGAAGCAAGCAC 297
Query 289 AGATTACTGAGGCGGAGATACGGCAGCTATGTTTAGCTTCCAAGGAAGTTTTTCTCAGTC 348
||||||||||| |||||||||| ||||||||||||||||| || || |||||||||||||
Sbjct 298 AGATTACTGAGACGGAGATACGTCAGCTATGTTTAGCTTCAAAAGAGGTTTTTCTCAGTC 357
Query 349 AGCCTAATCTCCTCGAGCTTGAGGCTCCTATCAAGATTTGCGGAGATGTTCATGGTCAGT 408
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGCCTAATCTCCTCGAGCTCGAGGCTCCTATCAAGATTTGCGGAGATGTTCATGGTCAGT 417
Query 409 TTCCAGATCTCTTGCGGTTGTTTGAGTATGGTGGCTATCCGCCAGCTGCAAATTACTTGT 468
||||||| |||||||||||||||||||||||||| ||||| |||||||| || |||||||
Sbjct 418 TTCCAGACCTCTTGCGGTTGTTTGAGTATGGTGGTTATCCACCAGCTGCGAACTACTTGT 477
Query 469 TTCTCGGGGACTATGTTGATCGTGGTAAGCAGAGCATAGAGACGATATGTCTTCTTCTTG 528
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 TTCTTGGGGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACGATATGCCTTCTTCTTG 537
Query 529 CCTACAAGGTCAAATACAAGTTCAACTTCTTTCTTCTCAGAGGCAATCACGAGTGTGCTT 588
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 CCTATAAGGTCAAATACAAGTTCAACTTCTTTCTTCTCAGAGGCAATCACGAATGTGCTT 597
Query 589 CAATCAATCGTGTATATGGATTCTATGATGAATGCAAACGAAGATATAATGTCCGCCTAT 648
||||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||| |||
Sbjct 598 CAATCAACCGTGTATATGGATTCTACGATGAATGCAAAAGAAGATATAATGTTCGCTTAT 657
Query 649 GGAAAACTTTCACTGAGTGCTTCAACTGTCTGCCTGTTTCTGCTCTCATTGATGATAAGA 708
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGAAAACATTCACCGAGTGCTTCAACTGTCTGCCTGTTTCTGCTCTCATTGATGATAAGA 717
Query 709 TCCTCTGTATGCATGGTGGACTATCGCCTGATATTAAGAGCTTAGATGACATCAAGAGAA 768
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 TCCTCTGCATGCATGGTGGACTATCGCCTGATATTAAGAGCTTAGATGACATCAGGAGAA 777
Query 769 TTCCTCGTCCTATTGACGTTCCTGATGAGGGCATTCTTTGTGATTTGTTATGGGCTGATC 828
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 778 TTCCTCGTCCTATTGACGTTCCTGATCAGGGCATTCTTTGTGATTTGTTGTGGGCTGATC 837
Query 829 CTGACAGAGAGATTGAAGGCTGGGGGGAGAATGACAGAGGTGTCTCTTATACATTTGGGG 888
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTGACAGAGAGATTCAAGGCTGGGGGGAGAATGACAGAGGTGTCTCTTATACATTTGGGG 897
Query 889 CCGACAAAGTAGCTGAGTTCCTTCAAACTCATGACCTTGACCTTGTATGCCGAGCTCATC 948
| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 898 CTGACAAAGTAGCTGAGTTCCTTCAAACTCATGACCTTGATCTTATATGCCGAGCTCATC 957
Query 949 AGGTTGTAGAAGATGGATATGAATTCTTTGCGAAA-AGACAACTGGTGACAATATTCTCT 1007
||||||||||||||||||| || |||||||| ||| |||||||| |||||||||||||||
Sbjct 958 AGGTTGTAGAAGATGGATACGAGTTCTTTGC-AAAGAGACAACTAGTGACAATATTCTCT 1016
Query 1008 GCACCCAATTACTGTGGCGAGTTTGACAATGCCGGCGCATTGATGAGTGTTGATGATAGC 1067
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1017 GCACCCAATTACTGTGGCGAGTTTGACAATGCTGGTGCATTGATGAGTGTTGATGATAGC 1076
Query 1068 TTAACATGTTCATTCCAAATCCTTAAGGCATCTGAGAAGAAAGGAAGATTTGGATTCAAC 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTAACATGTTCATTCCAAATCCTTAAGGCATCTGAGAAGAAAGGAAGATTTGGATTCAAC 1136
Query 1128 AGCCATGTTCCTAGACCAGGAACCCCACCTCATAAGGGTGGAAAAGGTCGTTAA-TCA-- 1184
| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 AACAATGTTCCTAGACCAGGAACCCCACCTCATAAGGGTGGAAAAGGTCGTTAACTCGTC 1196
Query 1185 ----A-G-----AA-AA--GAGTGAAGCCGATGGGTTCGAATTTTGAAAGGCAA-CAGTT 1230
| | || || ||||||| |||| |||||||||||||| ||||||| |||||
Sbjct 1197 GTCGATGGGTTCAAGAAACGAGTGAAACCGACGGGTTCGAATTTTGTAAGGCAAACAGTT 1256
Query 1231 TGTTTT 1236
||||||
Sbjct 1257 TGTTTT 1262
Score = 113 bits (61), Expect = 4e-24
Identities = 73/78 (94%), Gaps = 4/78 (5%)
Strand=Plus/Plus
Query 1256 TTTTGTAAAAATTGTGGAAGATGTTCACAGCATTTTCAACTGAAGAAAGTTGGGTTGGGT 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1321 TTTTGTAAAAATTGTGGAAGATGTTCACAGCATTTTCAACTGAAGAAAGTTGGGTT---T 1377
Query 1316 TTATACATCTAACCTTTT 1333
| ||||| ||||||||||
Sbjct 1378 T-ATACAACTAACCTTTT 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65612112315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5