BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489965
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11320.1 | Symbols: | Papain family cysteine protease | chr... 2067 0.0
AT4G11310.1 | Symbols: | Papain family cysteine protease | chr... 1554 0.0
> AT4G11320.1 | Symbols: | Papain family cysteine protease | chr4:6887254-6889059
FORWARD LENGTH=1430
Length=1430
Score = 2067 bits (1119), Expect = 0.0
Identities = 1331/1431 (93%), Gaps = 23/1431 (2%)
Strand=Plus/Plus
Query 1 AAAA-CCTCTTCTCCTCTTTAATAACTTGCAAAAACAAACACAAATAAAAGTTTAATTAG 59
|||| ||||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 10 AAAATCCTCTTCTCTTCTTTAATAACTT----TTAGAAACACAAATAAAAGTTTAATTAC 65
Query 60 TTTTAAGCCCAACAAAAATGGG-TAGTGCTAAATCAGCCATGCTAG-TCCTCTTACTAGC 117
|||||||||||||||||||||| || |||||||||||||||||| | || ||||||||||
Sbjct 66 TTTTAAGCCCAACAAAAATGGGTTA-TGCTAAATCAGCCATGCT-GATCTTCTTACTAGC 123
Query 118 AATGGTCATCTCATCTTGTGCCACGGCCATGGACATGTCTATTGTTTCCTCCAACGATAA 177
| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 124 ATTGGTCATCGCATCTTGTGCCACGGCCATGGACATGTCCGTTGTTTCCTCCAACGATAA 183
Query 178 CCACCACGTGACCACTGGTCCCGGCCGCCGCCAGGGTGTTTTCGACGCTGAAGCCACCTT 237
||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 184 CCACCACGTGACCGCCGGTCCCGGCCGCCGTCAGGGTATTTTCGACGCTGAAGCCACCTT 243
Query 238 GATGTTCGAGTCATGGATGGTCAAACATGGGAAAGTGTACGAGTCCGTTGCCGAGAAGGA 297
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 244 GATGTTCGAGTCATGGATGGTCAAACATGGGAAAGTGTACGACTCCGTTGCCGAGAAGGA 303
Query 298 GCGGCGTTTAACTATTTTCGAGGACAACCTCCGTTTTATCACTAACCGGAACGCTGAGAA 357
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ACGGCGTTTAACTATTTTTGAGGACAACCTCCGTTTTATCACTAACCGGAACGCTGAGAA 363
Query 358 TCTCAGTTATCGGCTTGGTTTGAACCGGTTTGCGGATCTATCTCTCCATGAGTACGCACA 417
||||||||| |||||||||||||| |||||||||||| ||||||||||||| |||| | |
Sbjct 364 TCTCAGTTACCGGCTTGGTTTGAATCGGTTTGCGGATTTATCTCTCCATGAATACGGAGA 423
Query 418 AATTTGCCATGGGGCTGATCCAAGACCTCCTAGGAACCACGTCTTCATGACTAGCAGCAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AATTTGCCATGGGGCTGATCCAAGACCTCCTAGGAACCACGTCTTCATGACTAGCAGCAA 483
Query 478 CCGATACAAGACTAGTGATGGTGATGTTCTTCCTAAGTCCGTTGACTGGAGAAACGAAGG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CCGATACAAGACTAGTGATGGTGATGTTCTTCCTAAGTCCGTTGACTGGAGAAACGAAGG 543
Query 538 CGCAGTGACTGAAGTCAAAGATCAAGGCCAATGCAGGAGTTGTTGGGCATTT-TCGACTG 596
||||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||
Sbjct 544 CGCAGTGACTGAAGTCAAAGATCAAGGCCTTTGCAGGAGTTGTTGGGC-TTTCTCCACTG 602
Query 597 TGGGGGCAGTGGAAGGCTTAAACAAAATCGTGACGGGAGAGTTAGTCACTTTGTCTGAGC 656
|||| |||||||||||||||||||| || ||||| |||||| |||| |||||||||||||
Sbjct 603 TGGGAGCAGTGGAAGGCTTAAACAAGATTGTGACTGGAGAGCTAGTAACTTTGTCTGAGC 662
Query 657 AAGATTTGATTAATTGCAACAAAGAAAACAATGGTTGCGGAGGAGGCAAAGTCGAGACGG 716
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 663 AAGATTTGATCAATTGTAACAAAGAAAACAATGGTTGCGGAGGAGGCAAAGTCGAGACAG 722
Query 717 CCTATGAGTTCATCATGAACAATGGTGGTCTTGGTACCGATAACGATTATCCTTACAAAG 776
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 723 CCTATGAGTTCATCATGAACAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAAG 782
Query 777 CTCTTAATGGAGTCTGC-AATGACCGCCTCAAGGAAAACAACAAGAATGTTATGATTGAT 835
|||| |||||||||||| || | ||||||||||||| |||||||||||||||||||||||
Sbjct 783 CTCTCAATGGAGTCTGCGAAGG-CCGCCTCAAGGAAGACAACAAGAATGTTATGATTGAT 841
Query 836 GGGTATGAGAATTTGCCTGCAAACGACGAATCTGCTCTCATGAAAGCGGTTGCTCACCAG 895
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 842 GGGTATGAGAATTTGCCTGCAAACGATGAAGCCGCTCTCATGAAAGCGGTTGCTCACCAG 901
Query 896 CCTGTGACTGCCGTTGTTGATTCCAGCAGCCGAGAGTTTCAGCTTTATGCATCGGGAGTA 955
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 902 CCTGTGACTGCCGTTGTCGATTCCAGCAGCCGAGAGTTTCAGCTTTATGAATCGGGAGTG 961
Query 956 TTTGATGGAACTTGCGGAACAAACTTAAACCATGGTGTTGTTGTGGTCGGGTATGGAACC 1015
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 962 TTTGACGGAACTTGCGGAACAAACCTAAACCATGGTGTTGTTGTGGTCGGGTATGGAACC 1021
Query 1016 GAGAACGGTCGTGACTACTGGATCGTGAGAAACTCGAGGGGGGACACATGGGGGGAAGCT 1075
||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||
Sbjct 1022 GAGAATGGTCGTGACTACTGGATTGTGAAAAACTCGAGGGGCGACACATGGGGGGAGGCT 1081
Query 1076 GGCTACATGAAGATGGCTCGCAACATTGCCAATCCAAGAGGCTTATGTGGCATCGCAATG 1135
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1082 GGCTACATGAAGATGGCTCGCAACATTGCCAATCCAAGAGGCCTATGTGGCATCGCAATG 1141
Query 1136 CGAGCTTCATACCCTCTCAAGAACTCGTTTTCTACTGATAAAATTTCGGTCGCCTAATAA 1195
||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 1142 CGAGCTTCATACCCTCTCAAGAACTCGTTTTCTACGGATAAAGTTTCGGTTGCCTAATAA 1201
Query 1196 TATGAACTAAATGTATGTCATGCCATGCATCGATTGAGCCAGCAACGTAATTCGACTTTG 1255
||||||||||||||||| |||| | | |||| || ||||| | ||| |||||||||||
Sbjct 1202 TATGAACTAAATGTATGCCATGGAACGGATCGGTTAAGCCATTATCGTTATTCGACTTTG 1261
Query 1256 AAGGAAAATAAAAAATTAATGTAGTCGATTGGTTTGGTTTTGTTATATATTTTGCATTTG 1315
||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1262 AAGGAAACTAAAAAAT-AATGTGGTCGATTGGTTTGGTTTTGTTATATATTATGCATTTG 1320
Query 1316 TATGTGG-TCA---A-TGTTTGGAGTTTGTATAATATTTCTTTGGGTCTAGAGATGAATT 1370
|||| || ||| | |||||| | |||||||||||||||||||||||||| ||| ||
Sbjct 1321 TATGGGGGTCAGTCAATGTTTGAACTTTGTATAATATTTCTTTGGGTCTAGTGAT-AA-- 1377
Query 1371 AATATTTTCCCTTTTGCCaaaaaaaTACTTGTGTGAGACGAGATTGATGAG 1421
| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1378 A-TATTTTCCCTTTTGCGAAAAAGGTACTTGTGTGAGACGAGATTGATGAG 1427
> AT4G11310.1 | Symbols: | Papain family cysteine protease | chr4:6883551-6885517
FORWARD LENGTH=1337
Length=1337
Score = 1554 bits (841), Expect = 0.0
Identities = 1166/1318 (88%), Gaps = 42/1318 (3%)
Strand=Plus/Plus
Query 42 AAATAAAAGTTTAATTAGTTTTAA---GCC-CAACAAAA-ATGGGTAGTGCTAAATCAGC 96
|||| ||||||| ||||||||||| || ||| |||| ||||||||||| ||||||||
Sbjct 4 AAATCAAAGTTTCATTAGTTTTAACCCCCCACAAAAAAACATGGGTAGTGCAAAATCAGC 63
Query 97 CATGCTAG-TCCTCTTACTAGCAATGGTCATCTCATCTTGTGCCACGGCCATGGACATGT 155
|||||| | |||||||| |||||||||||||| |||| |||||||||||||| || ||||
Sbjct 64 CATGCT-GATCCTCTTAGTAGCAATGGTCATCGCATCATGTGCCACGGCCATTGATATGT 122
Query 156 CTATTGTTTCCTCCAACGATAACCACCACGTGACCACTGGTCCCGGCCGCCGCCAGGGTG 215
| | ||||||| | ||||| | | || | | | || | ||| | |
Sbjct 123 CCGTGGTTTCCTACGACGAT-A--A-CA----A-C-C--GT---------CTCCATAGCG 161
Query 216 TTTTCGACGCTGAAGCCACCTTGATGTTCGAGTCATGGATGGTCAAACATGGGAAAGTGT 275
||||||| ||||| ||| | || || ||||||||||||||||||||||||||||||||||
Sbjct 162 TTTTCGATGCTGAGGCCTCGTTAATCTTCGAGTCATGGATGGTCAAACATGGGAAAGTGT 221
Query 276 ACGAGTCCGTTGCCGAGAAGGAGCGGCGTTTAACTATTTTCGAGGACAACCTCCGTTTTA 335
||| |||||||||||||||||| |||||||| || ||||| |||||||||||||||||||
Sbjct 222 ACGGGTCCGTTGCCGAGAAGGAACGGCGTTTGACGATTTTTGAGGACAACCTCCGTTTTA 281
Query 336 TCACTAACCGGAACGCTGAGAATCTCAGTTATCGGCTTGGTTTGAACC-GGTTTGCGGAT 394
||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 282 TCAATAACCGGAACGCTGAGAATCTCAGTTATCGGCTTGGTTTG-ACCGGGTTTGCGGAT 340
Query 395 CTATCTCTCCATGAGTACGCACAAATTTGCCATGGGGCTGATCCAAGACCTCCTAGGAAC 454
||||||| |||||||| | || ||||||| |||||||||||||||||||||||||||
Sbjct 341 TTATCTCTTCATGAGTATAAAGAAGTTTGCCACGGGGCTGATCCAAGACCTCCTAGGAAC 400
Query 455 CACGTCTTCATGACTAGCAGCAACCGATACAAGACTAGTGATGGTGATGTTCTTCCTAAG 514
|||||||| |||||||| ||| |||||||||||||||||| || |||||| |||||||||
Sbjct 401 CACGTCTTTATGACTAGTAGCGACCGATACAAGACTAGTGCTGATGATGTGCTTCCTAAG 460
Query 515 TCCGTTGACTGGAGAAACGAAGGCGCAGTGACTGAAGTCAAAGATCAAGGCCAATGCAGG 574
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 461 TCAGTTGATTGGAGAAACGAAGGAGCAGTGACTGAAGTCAAAGATCAAGGCCATTGCAGG 520
Query 575 AGTTGTTGGGCATTT-TCGACTGTGGGGGCAGTGGAAGGCTTAAACAAAATCGTGACGGG 633
||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 521 AGTTGTTGGGC-TTTCTCGACTGTGGGAGCAGTGGAAGGCTTAAACAAGATCGTGACGGG 579
Query 634 AGAGTTAGTCACTTTGTCTGAGCAAGATTTGATTAATTGCAACAAAGAAAACAATGGTTG 693
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 580 AGAGTTAGTCACTTTGTCTGAGCAAGATTTGATCAATTGTAACAAAGAAAACAATGGTTG 639
Query 694 CGGAGGAGGCAAAGTCGAGACGGCCTATGAGTTCATCATGAACAATGGTGGTCTTGGTAC 753
||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 640 CGGAGGAGGCAAACTCGAGACTGCCTATGAGTTCATCATGAAAAATGGTGGTCTTGGTAC 699
Query 754 CGATAACGATTATCCTTACAAAGCTCTTAATGGAGTCTGCAATGACCGCCTCAAGGAAAA 813
||| ||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||
Sbjct 700 CGACAACGATTATCCTTACAAAGCTGTTAACGGAGTCTGTGATGGCCGCCTCAAGGAAAA 759
Query 814 CAACAAGAATGTTATGATTGATGGGTATGAGAATTTGCCTGCAAACGACGAATCTGCTCT 873
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 760 CAACAAGAATGTTATGATTGATGGGTATGAAAATTTGCCCGCAAACGACGAATCTGCTCT 819
Query 874 CATGAAAGCGGTTGCTCACCAGCCTGTGACTGCCGTTGTTGATTCCAGCAGCCGAGAGTT 933
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 820 CATGAAAGCGGTTGCTCACCAGCCTGTGACTGCCGTTATCGATTCCAGTAGCCGAGAGTT 879
Query 934 TCAGCTTTATGCATCGGGAGTATTTGATGGAACTTGCGGAACAAACTTAAACCATGGTGT 993
||||||||||| ||||||||| |||||||| | || ||||||||| |||||||||| ||
Sbjct 880 TCAGCTTTATGAATCGGGAGTGTTTGATGGCTCGTGTGGAACAAACCTAAACCATGGAGT 939
Query 994 TGTTGTGGTCGGGTATGGAACCGAGAACGGTCGTGACTACTGGATCGTGAGAAACTCGAG 1053
||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||| ||
Sbjct 940 TGTTGTGGTCGGGTATGGAACTGAGAATGGTCGTGACTACTGGCTCGTGAAAAACTCTAG 999
Query 1054 GGGGGAC-ACATGGGGGGAAGCTGGCTACATGAAGATGGCTCGCAACATTGCCAATCCAA 1112
||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1000 GGGC-ATTACATGGGGAGAAGCTGGCTACATGAAGATGGCTCGAAACATTGCCAATCCAA 1058
Query 1113 GAGGCTTATGTGGCATCGCAATGCGAGCTTCATACCCTCTCAAGAACTCGTTTTCTACTG 1172
|||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1059 GAGGCTTATGTGGCATTGCAATGCGAGCTTCATACCCTCTAAAGAACTCCTTTTCTACCG 1118
Query 1173 ATAAAATTTCGGTCGCCTAATAATATGAACTAAATGTATGTCATGCCATGCATCGATTGA 1232
|||||| || ||||||||||| |||| |||||||||||| |||| | | ||| | |||
Sbjct 1119 ATAAAAGCTCCATCGCCTAATAAAATGAGCTAAATGTATGTTATGCAAAGGATCCAGTGA 1178
Query 1233 GCCAGCAACGTAATTCGACTTTGAAGGAAAATAAAAAATTAATGTAGTCGATTGGTTTGG 1292
||||||||| || ||||| || | | ||| | |||||| |||||||||||| ||||| |
Sbjct 1179 GCCAGCAACCTA-TTCGA-TT-GT-G-AAA-TGAAAAAT-AATGTAGTCGATGGGTTTTG 1231
Query 1293 TTTTGTTATATATTTTGCATTTGTATGT-GGTCAATGTTTGGAGTTTGTATAATATTT 1349
|||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||||
Sbjct 1232 TTTTGTAATATATTTTGGATTTGTATGGAGGGCAATGTTTGAAGTTTGTATAATATTT 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5