BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489967
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11350.1 | Symbols: | Protein of unknown function (DUF604) ... 2396 0.0
AT4G23490.1 | Symbols: | Protein of unknown function (DUF604) ... 1061 0.0
> AT4G11350.1 | Symbols: | Protein of unknown function (DUF604)
| chr4:6901682-6904244 FORWARD LENGTH=1640
Length=1640
Score = 2396 bits (1297), Expect = 0.0
Identities = 1500/1599 (94%), Gaps = 9/1599 (1%)
Strand=Plus/Plus
Query 1 TCACAAATTTGGA-TTTCTTGTTTCCGCTGTGAATGAAAGGAAACCAAAAAGACTCATCG 59
||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1 TCACAAATTTGGATTTTATTG-TTCCACTGTGAATGAAAGGAAACCAAAAAGACTCATCG 59
Query 60 GAGAAACCCATATGGGATCGGAGCTCTTCGGGTCTATCCATGACCCGACCCGGTCGATTA 119
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 60 GAGAAACCCATATGGGATCGGAGCTCATCGGGTATATCCATGACCCGACCCGGTCGATTA 119
Query 120 ATGATCTGGCTCATGCTCTTCATCTCCGTCACTTACATCATCTACACTCTCAAGATCGTC 179
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATAATCTGGCTCATCCTCTTCATCTCCGTCACTTACATCATCTACACTCTCAAGATCGTC 179
Query 180 TCCACTTCACACCCTTGCGAAGATCTAACCTCCGAGTCAATTCTCCAACAAAGACCGGAG 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCACTACACACCCTTGCGAAGATCTAACCTCCGAGTCAATTCTCCAACAAAGACCGGAG 239
Query 240 AAAAAAGCGGTTGCGGTTGCGGTTAAGGCGGTTCCGGCTGAGCACGAATCAACCGATCTA 299
|||||||||||| | || ||||||||||||||||||| ||||| ||| |||| ||||||
Sbjct 240 AAAAAAGCGGTTACAGTAACGGTTAAGGCGGTTCCGGCGGAGCAAGAAGCAACGGATCTA 299
Query 300 AACCATGTCGTTTTCGGGATTGCAGCGTCGTCAAAGCTATGGAAACAAAGGAAAGAGTAT 359
|||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 300 AACCATGTGGTTTTCGGTATTGCTGCGTCGTCGAAGCTATGGAAACAAAGGAAAGAGTAT 359
Query 360 ATCAAGATTTGGTACAAACCCAAGAAGATGAGAGGCTACGTGTGGTTAGATAAAGAGGTA 419
|||||||||||||| || || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 360 ATCAAGATTTGGTATAAGCCAAAGAAAATGAGAGGCTACGTGTGGTTAGACGAAGAGGTA 419
Query 420 AAGATAAAATCCGAAACCGGAGATCAAGAACA-CCTCCCGCCGGTAAGAATCTCCGGTGA 478
|||||||||||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct 420 AAGATAAAATCCGAAACCGGAGATCAAGAA-AGTCTCCCGTCGGTGAGAATCTCCGGTGA 478
Query 479 TACGTCGTCGTTTCCTTATACTAACAAGCAAGGACACCGATCAGCGA-TACGGATCTCAA 537
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |
Sbjct 479 TACGTCGTCGTTTCCTTATACTAACAAACAAGGACACCGATCAGCGATTA-GGATCTCGA 537
Query 538 GGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGAGTCGAAGAAGAACGTGAGGTGGT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGAGTCGAAGAAGAACGTGAGGTGGT 597
Query 598 TCGTGATGGGTGATGATGATACGGTTTTTGTTACGGATAATCTAATTAGGGTTTTGAGGA 657
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 598 TCGTGATGGGTGATGATGATACGGTTTTTGTAACGGATAATTTAATTAGGGTTTTGAGGA 657
Query 658 AGTACGACCATGAACAGATGTATTATATAGGAAGCTTGTCGGAATCTCATTTGCAGAATA 717
|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 658 AGTATGATCATGAACAGATGTATTATATAGGGAGCTTGTCGGAATCTCATTTGCAGAACA 717
Query 718 TT-TTCTTCTCTTATGGAATGGCTTATGGTGGAGGAGGTTTTGCGATTAGTTATCCTTTG 776
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 TTATT-TTCTCTTATGGAATGGCTTATGGTGGAGGAGGTTTTGCGATTAGTTATCCATTG 776
Query 777 GCAGTGGCTTTGAGTAAGATGCAAGATCGGTGTATTAAGAGGTATCCGGCTTTGTATGGT 836
|| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 777 GCTGTGGCTTTGAGTAAGATGCAAGATCAGTGTATTCAGAGGTATCCGGCTTTGTATGGT 836
Query 837 TCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTGGAGTTCCATTGACTAAGGAGATC 896
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 837 TCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTGGTGTTCCATTGACTAAAGAGATC 896
Query 897 GGTTTTCATCAATACGACGTTCATGGGAACCTATTCGGCCTCCTAGCTGCTCATCCGGTA 956
|||||||| |||||||||||||||||||| || ||||||||||||||||| |||||| ||
Sbjct 897 GGTTTTCACCAATACGACGTTCATGGGAATCTCTTCGGCCTCCTAGCTGCCCATCCGATA 956
Query 957 ACACCGTTTGTATCAATGCACCATCTTGATGTGGTGGAACCGATTTTTCCAAACATGACC 1016
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 ACACCGTTTGTATCGATGCACCATCTTGATGTTGTGGAACCGATTTTTCCAAACATGACT 1016
Query 1017 CGTGTTCGCGCCATCAAGAAACTAACTACACCGATGAAGATTGATTCGGCTGGGCTTCTC 1076
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1017 CGTGTTCGCGCTATCAAGAAACTAACCACACCGATGAAGATTGATTCGGCTGCGCTTCTC 1076
Query 1077 CAACAATCAATATGCTATGACAAGCATAAAAGCTGGACGATTTCGGTCTCGTGGGGATTT 1136
||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 1077 CAACAATCAATATGCTATGACAAACACAAAAGCTGGACTATTTCAGTCTCGTGGGGATTT 1136
Query 1137 GCGGTTCAAGTGTTCCGTGGATCCTTCTCACCACGGGAAATGGAAATGCCTTCTAGAACT 1196
||||| || |||||||||||||| ||||| || ||||||||||||||||| |||||||||
Sbjct 1137 GCGGTCCAGGTGTTCCGTGGATCATTCTCTCCCCGGGAAATGGAAATGCCATCTAGAACT 1196
Query 1197 TTCTTGAATTGGTACAAAAGAGCTGATTACACCGCCTACGCATTCAATACTAGGCCCGTG 1256
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTCTTGAATTGGTACAAAAGAGCGGATTACACCGCCTACGCATTCAATACTAGGCCCGTG 1256
Query 1257 AGTCGCAATCATTGCCAAAAACCGTTTGTTTTTCACATGTCGAATGCGAAATTCGACCCG 1316
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1257 AGTCGCAATCATTGCCAAAAACCGTTTGTTTTTCACATGTCGAGTGCAAAATTTGACCCG 1316
Query 1317 CAGTTGAACACCACGGTTAGCGAATACACGAGGCATCGGGTTCCGCATCCAGCTTGTCGT 1376
||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1317 CAGTTGAACACGACGGTTAGCGAATACACGAGACATCGGGTTCCGCAACCGGCTTGTCGA 1376
Query 1377 TGGGATATGGCTAACCCGGAGGAGATCAACACTATAGTTGTGTACAAAAAACCGGATCCT 1436
||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1377 TGGGATATGGCTAACCCAGAGGAGATCAACACTATAGTCGTCTACAAAAAACCCGATCCT 1436
Query 1437 CATCTATGGACCAGGTCACCGAGAAGAAATTGTTGCAGAGTATTACAAACAAAGAGGAAT 1496
|| ||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1437 CACCTATGGAACAGATCACCTAGAAGAAACTGTTGCAGAGTATTACAAACAAAGAGGAAT 1496
Query 1497 AATACATTATGGATTAATGTTGGTGTGTGTAGAGCAGGTGAAGTGACTGAAGTTAAGTAA 1556
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1497 AATACATTATGGATCAATGTTGGTGTATGTAGAGCAGGTGAAGTCACTGAAGTAAAGTAA 1556
Query 1557 TTTCCACCTTTGTAATaaaaaaaGTTTGAAAGAGAAAAA 1595
|||| | |||||| ||| |||| |||||||||||||||
Sbjct 1557 TTTCTAT-TTTGTACTAAGAAAATTTTGAAAGAGAAAAA 1594
> AT4G23490.1 | Symbols: | Protein of unknown function (DUF604)
| chr4:12251431-12254270 REVERSE LENGTH=2027
Length=2027
Score = 1061 bits (574), Expect = 0.0
Identities = 1057/1286 (82%), Gaps = 49/1286 (4%)
Strand=Plus/Plus
Query 294 GATCTAAACCATGTCGT-TTTCGGGATTGCAGCGTCGTCAAAGCTATGGAAACAAAGGAA 352
||||| ||||| || || ||| ||||| || |||||||| |||||||||||||| |||||
Sbjct 625 GATCTTAACCACGTGGTGTTT-GGGATCGCTGCGTCGTCTAAGCTATGGAAACAGAGGAA 683
Query 353 AGAGTATATCAAGATTTGGTACAAACCCAAGAA-G-ATGAGAGGCTACGTGTGGTTAGAT 410
||||||||||||||| ||||| ||| |||| || | ||| | |||||||| |||||||||
Sbjct 684 AGAGTATATCAAGATCTGGTATAAA-CCAA-AACGCATGCGTGGCTACGTTTGGTTAGAT 741
Query 411 AAAGAGG-TAAAGATAAAATCCGAAACCGGA-GATCAAGAACA-C--CTCCCGCCGGT-A 464
||||||| |||| | | | || | || ||| | ||| | | || || ||||| |
Sbjct 742 AAAGAGGTTAAA-A-AGAGTCTTAGTGATGATGATGACGAAAAGCTTCTTCCTCCGGTGA 799
Query 465 AGAATCTCCGGT-GATACGT-CGTCGTTTCCTTATACTAACAAGCAAGGACACCGATCAG 522
| |||||||||| || || | | |||||||||||||||||||| |||||||| || || |
Sbjct 800 A-AATCTCCGGTGGA-AC-TGCTTCGTTTCCTTATACTAACAAACAAGGACAACGCTCTG 856
Query 523 CGATACGGATCTCAAGGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGAGTCGAAGA 582
|| |||||||||| ||||||||||| ||||| | || || || | | ||| ||
Sbjct 857 CGTTACGGATCTCGAGGATTGTTTCTGAAAC---GCTGCGT-TT-A----G-GTC--CGA 904
Query 583 AGAACGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTTTTTGTTACGGATAATCTAA 642
|||| || |||||||| ||||||||||||||||||||||| ||||||| |||||| | |
Sbjct 905 AGAATGTTAGGTGGTTTGTGATGGGTGATGATGATACGGTGTTTGTTATTGATAATTTGA 964
Query 643 TTAGGGTTTTGAGGAAGTACGACCATGAACAGATGTATTATATAGGAAGCTTGTCGGAAT 702
||||||| ||||||||||| |||||||| ||||||||||| || || |||||||||||||
Sbjct 965 TTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGGGAGCTTGTCGGAAT 1024
Query 703 CTCATTTGCAGAATAT-TTTCTTCTCTTATGGAATGGCTTATGGTGGAGGAGGTTTTGCG 761
||||||| ||||| || ||| ||||| ||||| ||||||||||||||||| || |||||
Sbjct 1025 CTCATTTACAGAACATATTT-TTCTCGTATGGTATGGCTTATGGTGGAGGTGGATTTGCT 1083
Query 762 ATTAGTTATCCTTTGGC-AGTGGCTTTGAGTAAGATGCAAGATCGGTGTATTA-AGAGGT 819
|| || ||||| ||||| | |||||||||||||||||||||||||||| || ||||||
Sbjct 1084 ATAAGCTATCCATTGGCTA-AAGCTTTGAGTAAGATGCAAGATCGGTGTA-TACAGAGGT 1141
Query 820 ATCCGGCTTTGTATGGTTCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTGGAGTTC 879
|||| || |||||||| || |||||||| |||||||||||||||||||| ||||| ||||
Sbjct 1142 ATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGAACTTGGTGTTC 1201
Query 880 CATTGACTAAGGAGA-TCGGTTTTCATCAATACGACGTTCATGGGAACCTATTCGGCCTC 938
|| | ||||| || | |||| ||||| || ||||||||| | |||||||| || |||||
Sbjct 1202 CACTCACTAAAGA-ACTCGGATTTCACCAGTACGACGTTTACGGGAACCTCTTTGGCCTT 1260
Query 939 CTAGCTGCTCATCCGGTAACACCGTTTGTATCAATGCACCATCTTGATGTGGTGGAACCG 998
|| ||||| || || ||||||||||| || || |||||||| || || ||||||||||||
Sbjct 1261 CTCGCTGCACACCCAGTAACACCGTTCGTCTCGATGCACCACCTCGACGTGGTGGAACCG 1320
Query 999 ATTTTTCCAAACATGACCCGTGTTCGCGCCATCAAGAA-ACTAACTACACCGATGAAGAT 1057
||||| || |||||||| ||||| |||||| ||||||| | || | | ||| |||||| |
Sbjct 1321 ATTTTCCCTAACATGACACGTGTCCGCGCCCTCAAGAAGATTACCGA-ACCTATGAAGCT 1379
Query 1058 TGATTCGGCTGGGCTTCTCCAACAATCAATATGCTATGACAAGCATAAAAGCTGGACGAT 1117
||| || || ||||||||||| || || |||||||| |||||||| || |||||||| ||
Sbjct 1380 TGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAGCTGGACCAT 1439
Query 1118 TTCGGTCTCGTGGGGATTTGCGGTTCAAG-TGTTCCGTGG-ATCCTTCTCACCACGGGAA 1175
|||||||| ||||| | ||||||| || | || || || || ||||| || || |||
Sbjct 1440 CTCGGTCTCTTGGGGCTACGCGGTTC-AGATTTTTCGCGGAAT-ATTCTCTCCCCGAGAA 1497
Query 1176 ATGGAAATGCCTTCTAGAACTTTCTTGAATTGGTACAAAAGAGCTGATTACACCGCCTAC 1235
|||||||||||||||||||| |||||||||||||||||| | || |||||||| || |||
Sbjct 1498 ATGGAAATGCCTTCTAGAACCTTCTTGAATTGGTACAAACGGGCGGATTACACTGCTTAC 1557
Query 1236 GCATTCAATACTAGGCCCGTGAGTCGCAATCATTGCCAAAAACCGTTTGT-TTTTCACAT 1294
|| ||||| |||||||| || || || || | || |||||||||||||| |||| ||||
Sbjct 1558 GCTTTCAACACTAGGCCGGTTAGCCGGAACCCGTGTCAAAAACCGTTTGTGTTTT-ACAT 1616
Query 1295 GTCGAATGCGAAATTCGACCCGCAGTTGAACACCACGGTTAGCGAATACACGAGGCATCG 1354
||||| |||||||||| | |||| ||||||| ||||||||||||||||||| || ||
Sbjct 1617 GTCGAGCACGAAATTCGATCAGCAGCTGAACACGACGGTTAGCGAATACACGATACACCG 1676
Query 1355 GGTTCCGCATCCAGCTTGTCGTTGGGATATGGCTAACCCGGAGGAGATCAACACTATAGT 1414
||| | ||||| |||| || ||| | ||| | ||||| | ||||| || || || ||
Sbjct 1677 TGTTTCACATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAATACCATCGT 1736
Query 1415 TGTGTACAAAAAACCGGATCCTCATCTAT-GGACCAGGTCACCGAGAAGAAATTGTTGCA 1473
|| ||||| ||||| || |||||||||| ||| |||||||| || || ||||||||||
Sbjct 1737 CGTCTACAAGAAACCCGACCCTCATCTATGGGA-AAGGTCACCTAGGAGGAATTGTTGCA 1795
Query 1474 GAGTATTACAAACAAAGAGGAATAATACATTATGGATTAATGTTGGTGTGTGTAGAGCAG 1533
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1796 GAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAGAGCAG 1855
Query 1534 GTGAAGTGACTGAAGTTAAGTAATTT 1559
||||||| ||||||||||||||||||
Sbjct 1856 GTGAAGTCACTGAAGTTAAGTAATTT 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78764655105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5