BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489971
Length=3335
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF... 4870 0.0
> AT4G11420.1 | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1
| eukaryotic translation initiation factor 3A | chr4:6947476-6952445
REVERSE LENGTH=3451
Length=3451
Score = 4870 bits (2637), Expect = 0.0
Identities = 3175/3417 (93%), Gaps = 108/3417 (3%)
Strand=Plus/Plus
Query 1 AGAAACCCTAGAGTTGCTTCCGCTTCG-----C-T-TCTC---T---TCTTCTCTTATCA 47
||||||||||||||||||||||||||| | | |||| | ||||||||| |||
Sbjct 3 AGAAACCCTAGAGTTGCTTCCGCTTCGCTTCTCGTCTCTCTTATCAGTCTTCTCTTTTCA 62
Query 48 CGGCTACAAGGCTAATTGAGAGTGTCCCTTGC----------G-T--TA---TTTTTCGT 91
|||||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 63 CGGCTACAAGGCTAATTGAGAGTGTCCCTTGCGTTAGAGTTTGTTACTAGCTTTTTTCGT 122
Query 92 CTGAAACATGGCGAATTTTGCTAAACCAGAGAACGCGTTGAAGCGTGCTGATGAATTGAT 151
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 123 CTGAAACATGGCGAATTTTGCCAAACCAGAGAACGCGTTGAAGCGTGCTGATGAATTGAT 182
Query 152 TAATGTTGGACAGAAACAAGATGCTCTTCAGGCGCTTCATGATCTCATTACTTCCAAGAG 211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CAATGTTGGACAGAAACAAGATGCTCTTCAGGCGCTTCATGATCTCATTACTTCCAAGAG 242
Query 212 ATACAGAGCTTGGCAGAAACCTCTTGAAAAGATCATGTTTAAGTATCTTGATCTTTGTGT 271
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 243 ATACAGAGCTTGGCAGAAACCGCTTGAGAAGATCATGTTTAAGTATCTTGATCTTTGTGT 302
Query 272 TGACTTGAAGAGGGGTCGGTTTGCTAAGGATGGGTTGATTCAGTATCGTATTGTTTGCCA 331
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 303 TGACTTGAAGAGGGGTCGATTCGCTAAGGATGGATTGATTCAGTATCGTATTGTTTGCCA 362
Query 332 GCAAGTGAATGTCAGTTCTCTT-GAGGAAGTTATCAAGCACTTCCTACATCTTGCTACTG 390
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 363 GCAAGTGAATGTCAGTTC-CTTGGAGGAAGTTATCAAGCACTTCCTACATCTTGCTACTG 421
Query 391 AGAAAGCTGAGCAGGCTCGTTCTCAGGCTGATGCCCTTGAGGAGGCTCTTGATGTTGATG 450
| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 422 ACAAAGCTGAGCAAGCTCGGTCTCAGGCGGATGCCCTTGAGGAGGCTCTTGATGTTGATG 481
Query 451 ACCTTGAAGCTGATAGGAAGCCTGAGGATTTACAGCTGAGTATTGTCAGTGGGGAGAAGG 510
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 482 ACCTTGAAGCTGATAGGAAGCCTGAGGATTTACAGCTAAGTATTGTCAGTGGGGAGAAGG 541
Query 511 GAAAAGATAGGTCTGACCGTGAATTGGTCACCCCATGGTTCAAG-TTCTTGTGGGAGACG 569
|||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||
Sbjct 542 GAAAAGATAGGTCTGACCGTGAGTTGGTCACCCCATGGTTTAAGTTTC-TGTGGGAGACA 600
Query 570 TACAGGACAGTGCTTGAGATATTGCGAAACAACTCAAAGTTGGAGGCACTTTATGCGATG 629
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 TACAGGACAGTCCTTGAGATATTGCGAAACAACTCAAAGTTGGAAGCACTTTATGCGATG 660
Query 630 ACAGCACATAAAGCCTTCCAGTTCTGTAAGCAGTACAAGCGAACAACAGAGTTCCGTAGG 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAGCACATAAAGCCTTCCAGTTCTGTAAGCAGTACAAGCGAACAACAGAGTTCCGTAGG 720
Query 690 CTTTGTGAAATTATAAGAAATCATTTGGCAAACCTGAACAAGTACAGAGACCAAAGGGAC 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTTTGTGAAATTATAAGAAATCATTTGGCAAACCTGAACAAGTACAGAGACCAAAGGGAC 780
Query 750 CGACCTGACTTATCAGCCCCTGAGAGCTTGCAACTGTATCTGGACACAAGATTTGATCAG 809
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 781 CGACCTGACTTATCAGCCCCTGAGAGCTTGCAGCTGTATCTGGACACAAGGTTTGATCAG 840
Query 810 TTGAAAGTTGCTACCGAGCTTGGGCTTTGGCAGGAAGCTTTTCGCTCTGTTGAAGATATC 869
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGAAAGTTGCTACTGAGCTTGGACTTTGGCAGGAAGCTTTTCGCTCTGTTGAAGATATC 900
Query 870 TATGGACTAATGTGCATGGTCaaaaaaaCGCCCAAGTCATCTTTATTGATGGTTTATTAT 929
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TATGGATTAATGTGCATGGTCAAAAAAACGCCCAAGTCATCTTTATTGATGGTTTATTAT 960
Query 930 TCCAAATTGACCGAGATCTTCTGGATTTCTTCTAGCCATCTTTATCATGCTTATGCATGG 989
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCCAAATTGACTGAGATCTTCTGGATTTCTTCTAGCCATCTTTATCATGCTTATGCATGG 1020
Query 990 TTTAAGCTATTTAGTCTGCAGAAAAATTTCAATAAGAATTTAAGCCAAAAGGATTTGCAG 1049
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 TTTAAGCTGTTTAGTCTGCAGAAAAATTTCAACAAGAATTTAAGCCAAAAGGATTTGCAG 1080
Query 1050 CTGATTTCATCATCTGTTGTCTTGGCGGCATTGTCCGTTCCACCGTTTGATCGGGCTCAG 1109
|| || | ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1081 CTAATAGCGTCATCTGTTGTCTTGGCGGCATTGTCCATTCCACCATTTGATCGGGCTCAG 1140
Query 1110 AGTGCATCCCATATGGAACTTGAAAATGAGAAAGAACGCAATTTGAGGATGGCCAACCTC 1169
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 AGCGCATCCCATATGGAACTTGAAAATGAGAAAGAACGCAATTTGAGGATGGCTAACCTC 1200
Query 1170 ATTGGATTCAATCTTGAACCTAAATTTGAGGGCAGAGATATGCTTTCCCGGTCAGCTCTT 1229
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 ATTGGATTCAATCTTGAACCTAAATTTGAGGGCAAAGATATGCTTTCCCGGTCAGCTCTT 1260
Query 1230 CTGTCAGAGCTGGTTTCAAGAGGTGTTCTGAGCTGTGCATCCCAGGAGGTCAAAGATCTT 1289
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1261 CTGTCAGAGCTGGTTTCAAAAGGTGTTTTGAGCTGTGCATCTCAGGAGGTCAAAGATCTT 1320
Query 1290 TTCCATGTTTTGGAGCATGAATTTCACCCACTTGATCTTGGCTCCAAGATTCAGCCTTTG 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTCCATGTTTTGGAGCATGAATTTCACCCACTTGATCTTGGCTCCAAGATTCAGCCTTTG 1380
Query 1350 CTGGAAAAGATTTCAAAATCTGGTGGGAAACTGTCCTCAGCTCCTTCTTTACCAGAAGCG 1409
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1381 CTGGAAAAGATTTCCAAATCTGGTGGGAAACTGTCCTCAGCTCCTTCTTTACCAGAAGTG 1440
Query 1410 CAGCTTTCCCAATATGTTCCTGCTCTGGAGAAGCTTGCTACTCTGAGGCTACTACAGCAG 1469
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1441 CAACTTTCCCAATATGTTCCTTCTCTGGAGAAGCTTGCTACTCTGAGGCTACTTCAACAG 1500
Query 1470 GTTTCTAAGATTTATCAAACCATAAGAATTGAGAGTTTATCTCAGTTGGTACCCTTCTT- 1528
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GTGTCTAAGATTTATCAGACAATAAGAATTGAGAGTTTATCTCAGTTGGTACCCTTCTTT 1560
Query 1529 CGAATTCTCAGTGGTAGAGAAGATATCTGTTGATGCTGTGAAGAACAATTTCGTTGCCAT 1588
| ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1561 C-AATTCTCAGAGGTAGAGAAGATTTCTGTTGATGCTGTGAAGAACAATTTTGTTGCCAT 1619
Query 1589 GAAAGTTGATCACATGAAGGGTGTTGTAATTTTTGGAAATTTGGGTATTGAGTCTGATGG 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GAAAGTTGATCACATGAAGGGTGTTGTAATTTTTGGAAATTTGGGTATTGAGTCTGATGG 1679
Query 1649 ACTGAGGGATCATCTGGCTGTTTTTGCCGAGTCTTTGAGCAAAGTAAGAGCTATGCTGTA 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ACTGAGGGATCATCTGGCTGTTTTTGCCGAGTCTTTGAGCAAAGTAAGAGCTATGCTGTA 1739
Query 1709 TCCTGTCCCAAGTAAAGCATCAAAACTAGCTGGCATAATACCAAATTTAGCGGATACTGT 1768
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1740 TCCTGTCCCAAGTAAAGCATCAAAACTAGCTGGCGTTATACCAAATTTAGCAGATACTGT 1799
Query 1769 TGAGAAAGAACACAAAAGACTGCTTGCTCGTAAATCAATCATTGAAAAGAGGAAGGAGGA 1828
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TGAGAAAGAGCACAAAAGACTGCTTGCTCGTAAATCAATCATTGAAAAGAGGAAGGAGGA 1859
Query 1829 TCAAGAGCGTCAGCAACTAGAAATGGAACGTGAAGAGGAGCAGAAACGGCTTAAGCTTCA 1888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TCAAGAGCGTCAGCAACTAGAAATGGAACGTGAAGAGGAGCAGAAACGGCTTAAGCTTCA 1919
Query 1889 GAAGCTAACTGAGGAGGCAGAACAGAAGAGACTTGCAGCAGAGCTTGCAGAGAGAAGGAA 1948
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1920 GAAGCTAACTGAAGAGGCAGAACAAAAGAGACTTGCAGCAGAGCTTGCAGAGAGAAGAAA 1979
Query 1949 ACAAAGAATCCTTAGGGAGATAGAGGAGAAGGAGCTTGAAGAAGCTCAGGCTTTGCTGGA 2008
||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1980 ACAAAGAATCCTTAGAGAGATAGAGGAGAAGGAGCTTGAAGAAGCCCAAGCTTTACTGGA 2039
Query 2009 GGACACAGAGAAGCGCATGAAAAAGGGAAAGAAGAAGCCGCTTTTAGATGGAGAGAAGGT 2068
|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2040 AGAGACAGAGAAGCGCATGAAAAAGGGAAAGAAGAAGCCACTTTTAGACGGAGAGAAGGT 2099
Query 2069 GACAAAGCAAACTGTGATGGAGAGGGCCTTAACTGAGCAAG-TCAAGGAAAGGCAAGAAA 2127
|||||||||| |||||| ||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 2100 GACAAAGCAATCTGTGAAGGAAAGGGCCTTAACTGAGCA-GCTCAAGGAAAGGCAAGAAA 2158
Query 2128 TGGAGAAGAAACTCCAAAAACTTGCCAAAACTATGGATTATTTGGAAAGAGCAAAGAGAG 2187
|||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 2159 TGGAGAAGAAGCTTCAAAAGCTTGCCAAAACGATGGATTATTTGGAAAGAGCAAAGAGAG 2218
Query 2188 AAGAGGCTGCTCCATTGATTGAAGCTGCATATCAGCGAAGACTGGTAGAGGAAAGAGAGT 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 AAGAGGCTGCTCCATTGATTGAAGCTGCATATCAGCGAAGACTGGTAGAGGAAAGAGAGT 2278
Query 2248 TTTATGAGCGCGAGCAACAGCGTGAAGTTGAACTCAGTAAAGAGCGTCATGAGAGTGACT 2307
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 TTTATGAGCGTGAACAACAGCGTGAAGTTGAACTCAGTAAAGAGCGTCATGAGAGTGACT 2338
Query 2308 TGAAGGAGAAAAACAGGTTGTCCAGAATGTTGGGTAATAAGGAAATATTCCAAGCACAAG 2367
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 TGAAGGAGAAGAACAGGTTGTCCAGAATGTTGGGTAATAAGGAAATATTCCAAGCACAAG 2398
Query 2368 TGATTAGTCGACGACAAGCAGAGTTTGACAGAATAAGGACGGAGAGAGAGGAGCGTATCA 2427
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2399 TGATTAGTCGTCGACAAGCAGAGTTTGACAGAATCAGGACGGAGAGAGAGGAGCGTATCA 2458
Query 2428 GCCAAATAATTCGAGCCAGGAAGCAAGAAAGGGATATTAAGAGGAAGCAGATATATTATT 2487
| ||||||| |||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct 2459 GTAAAATAATCCGAGAGAAGAAGCAAGAAAGGGATATCAAGAGGAAGCAGATATATTATT 2518
Query 2488 TGACAATTgaagaagaaagaattaggaagctacaggaagaagaggaagctcgcaagcggg 2547
||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2519 TGAAAATTGAAGAAGAAAGGATTAGGAAGCTGCAGGAAGAAGAGGAAGCTCGCAAGCAGG 2578
Query 2548 aagaagcTGAGAGGCTCAAGAAGGAACAAGCTGAACGCAAAGCAAAGTTGGATGAAA--T 2605
|||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| |
Sbjct 2579 AAGAAGCTGAGAGGCTCAAGAAGGTAGAAGCTGAACGCAAAGCAAACTTGGAT-AAAGCT 2637
Query 2606 TGCTGAGAAGCAAAGGCagagagagagagagGTGGAGGAGAAAGGAAGGCTGGAACGAGA 2665
| ||||||||||||||||||||||| |||| |||| |||||| | |||| |||||||||
Sbjct 2638 TT-TGAGAAGCAAAGGCAGAGAGAGATAGAGCTGGAAGAGAAAAGTAGGCGGGAACGAGA 2696
Query 2666 AGCTGC-GTTGAAAGGAACTACTAATGCACCGCCTGCTCGCCTTGCAGAGCCTACAGTTA 2724
|| || ||||| |||||||| | |||||| ||||||||||||||||||||||| ||||
Sbjct 2697 AGA-GCTGTTGAGAGGAACTA--A-TGCACCACCTGCTCGCCTTGCAGAGCCTACTGTTA 2752
Query 2725 CTCCTGCTGGAACTGCCGCCCCTGCTGCTA-CAGCAGCAGCATCAGGTGCGG--GCAA-A 2780
|||||| ||||||| |||| || || || | ||||||||||| |||| || ||| |
Sbjct 2753 CTCCTGTTGGAACTACCGCACCAGCAGC-AGCAGCAGCAGCAGCAGGAGCACCAGCAGCA 2811
Query 2781 --T-ATGTTCCTAAGTGGAAGCTCCAGACTACTGAGGTCTCATCACCACCAACAGCAGCA 2837
| ||||||| |||||||||| ||||||||||||||||||| || | | ||||| |
Sbjct 2812 CCTTATGTTCCGAAGTGGAAGCGCCAGACTACTGAGGTCTCAGG-CC-C-ATCAGCA-C- 2866
Query 2838 CCAACACCATCAGAAACTGACCG-CTGGTCCAACCGTGGACCGCCTCCAGGAGATGACCA 2896
| |||| |||||||||||||||| | ||||||||||||| |||||||| |||||||||||
Sbjct 2867 C-AACATCATCAGAAACTGACCGAC-GGTCCAACCGTGGGCCGCCTCCCGGAGATGACCA 2924
Query 2897 CTGGGGAAACAGCAGAGGA-CCGGCTCAGAATACTGACCGGTGGACTAGT---------- 2945
|||||||| || ||||||| ||| ||||||||||||||||||||||||||
Sbjct 2925 CTGGGGAAGCAACAGAGGAGCCG-CTCAGAATACTGACCGGTGGACTAGTAATAGGGAAA 2983
Query 2946 ---C----C-TCCAGCTGAAGGAGGAGACCGTTGGGGTCCTGGTCCTAGAGGCAGTGATG 2997
| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2984 GATCTGGACCTCCAGCTGAAGGAGGAGACCGTTGGGGTTCTGGTCCTAGAGGCAGTGATG 3043
Query 2998 AACGCCGATCTGCATTTGGAAGCTCCAGACCCAGGCCAACACAGCGTTGAGTAATAATAA 3057
| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3044 ATCGCCGATCCACATTTGGAAGCTCCAGGCCCAGGCCAACACAGCGTTGAGTAATAATAA 3103
Query 3058 ATTTTTTGGTCTCAATCTCCATGGGAATGAATGAAA--GGTTATATCTCTGGATTTTCAA 3115
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 3104 TTTTTTTGGTCTCAATCTCCATGGGAATGAATGAAAAAGGTTAT--CTCTGGATTTTCAA 3161
Query 3116 CATCACAGCACTCCTCTTTAGCCCAAACCTGTCTCTTCTTCTTTTGAAGATTGCTCATCT 3175
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3162 CATCACAGCACTCTTCTTTAGCCCAAACCTGTCTCTTCTTCTTTTGAAGATTGCTCATCT 3221
Query 3176 TTTATATGTTTT-ATGAAAGATTTTAAAACATGTTAAGACTCGTTTTTTGCTCTACACAA 3234
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3222 TTTATAAGTTTTTATGAAAGATTTTAAAACATGTTA-GACTCGTTTTTTGCTCTACACA- 3279
Query 3235 CACCAAGAGAGAGTTGCTATTTCCTTCTTCGGTTGGATCTTT----GCTTGTCCAA---- 3286
| ||| |||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 3280 C-CCA-GAGAGAGTTGTTATTTCCTTCTTCGGTTGGATCTTTCTTTGTTTGTCCAATTTA 3337
Query 3287 ---C----TTTCTGCTGTAAAAACCTTTGACATCGATCAGCTTCT-TTTCCATGCAA 3335
| ||||||||||||||||||||||||| ||||||||||| |||| | ||||
Sbjct 3338 TTTCCAACTTTCTGCTGTAAAAACCTTTGACATTGATCAGCTTCTCTTTCAA-GCAA 3393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165952247444
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5