BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489973
Length=2758
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11450.1 | Symbols: | Protein of unknown function (DUF3527)... 4061 0.0
> AT4G11450.1 | Symbols: | Protein of unknown function (DUF3527)
| chr4:6958681-6962046 REVERSE LENGTH=2786
Length=2786
Score = 4061 bits (2199), Expect = 0.0
Identities = 2591/2774 (93%), Gaps = 51/2774 (2%)
Strand=Plus/Plus
Query 5 GAGAGATAGTGACTGCGAGAGAGATTTTTGCACACTCGAAAGAGGGaaaaaaaGAAACAA 64
|||||| || || | |||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 36 GAGAGAGAGAGAGAGAGAGATAGATTTTTGCACACTCG-AAGAGGGAAATAAAGAAACAA 94
Query 65 AATGATGCCTTGA-GGAAGAAAACTAATTGATTGCttttttttttCTTCTCTATCTTTTT 123
||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 95 AATGATGCCTTGATGG-AGAAAACTAATTGATTGC--TTTTTTTTCTTCTCTATCTTTTT 151
Query 124 GTTTACATTACAAAGAACATGATCGGTTTCTCTTATTACCA-C--CATTGTTTTGTAATC 180
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 152 GTTTACATTACAAAGAACATGATCGGTTTCTCTTATTACCACCTTCAGTGTTTTGTAA-- 209
Query 181 TCTCCTTCTTGTTCTTGTTCTTCTTCTCCATGTCGATGAAGAAATGTTTGAGATTTACAC 240
||| | | ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TCT-C-TATTG--CTTCTTCTTCTTCTCCATGTCGATGAAGAAATGTTTGAGATTTACAC 265
Query 241 ACTCTGTTTCTTACTGTAACTCGGATGTTTTAAAGTGGTGATTGGAGTGGAAATGGAATT 300
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 266 ACTCTGTTTCTCACTGTAACTCGGATGTTTTGAAGTGGTGATTGGAGTGGAAATGGAATT 325
Query 301 TGGTAAAGGAATTGATATGGAACAAAGCCCCAACAGTGTTCTTCCTCCTCCTCGTCCATT 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 326 TGGTAAAGGAATTGATATGGAACAAAGCCCCAATAGTGTTCTTCCTCCTCCTCGTCCATT 385
Query 361 CACTGAATCAGAAAAGAGGACTAGTACAAGACTGAAGCCGCCTCGTAGAGATGAGATATT 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 386 CACTGAATCAGAAAAGAGGACTAGTACAAGACTAAAGCCGCCTCGTAGAGATGAGATATT 445
Query 421 GAGAGTCAAAGAAGGTTTCACCGAGATAAGTTTCAGGCGTTACCGTAGCACATCTTGTAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 446 GAGAGTCAAAGAAGGTTTCACCGAGATAAGTTTCAGGCGTTACCGTAGCACATCATGTAA 505
Query 481 GAATTTTCCTTCTAAATCTTTTGCAATGGGGGATACAACGGAGCTAAGGCGCGGTTCTGT 540
||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 506 GAACTTTCCTTCTAAACCACTTGCAATGGGAGATACAACGGAGCTAAGGCGCGGTTCTGT 565
Query 541 GTATCAAAGCTCTAATGCGTTGTTTAAAGAACTTAGAGAACCGCAGGGGCGTAAAGATAC 600
|||||||||||||||| |||||||||||||||||||||||| || || ||||||||| |
Sbjct 566 TTATCAAAGCTCTAATGAGTTGTTTAAAGAACTTAGAGAACCACAAGGACGTAAAGATTC 625
Query 601 AAAAGCGAAACTTGAGTTGTCTCGTAGTAGTGATGCTTCTTTTTCCTTTAGAGTCGTTGA 660
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 626 AAAGGCGAAACTTGAGTTGTCTCGTAGTAGTGATGCTTCTTTCTCCTTTAGAGTTGTTGA 685
Query 661 TTCTTCGAGGAAGAGAAGTACAGAGAAAAGAGCGCATAAGACGGTTTTAGATGGACAGAA 720
||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 686 TTCTTCGAGGAAGGGAAGTACTGAGAAAAGACCGCATAAGACGGTTTTAGATGGTCAGAA 745
Query 721 GTCATCAGTTGAACCTAGCACCTCTAGCAACTTCATTGACATTTGTTTGAAATCAGGTAT 780
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 746 GTCATTAGTTGAACCTTGCACCTCTAGCAACTTCATTGACATTTGTTTGAAGTCAGGTAT 805
Query 781 TAAAGATAGAGCGGCGGTGTTGGATTCAGCTGATGATGACCGTAAAATTAGATTGCCTAA 840
|||||||||||| | ||||||||||||| |||| |||||| ||| ||||||||||||||
Sbjct 806 TAAAGATAGAGCTGTAGTGTTGGATTCAGATGATAATGACCATAAGATTAGATTGCCTAA 865
Query 841 GCC-TCATTCTGCAAAGGTAGACTCATTAGAAACCAGTTGCAATAAGGAAAGCTCAAGAG 899
||| | |||||||||||||||||||| |||||||||||| ||||||||| ||||||||||
Sbjct 866 GCCAT-ATTCTGCAAAGGTAGACTCAGTAGAAACCAGTTACAATAAGGACAGCTCAAGAG 924
Query 900 TTAGGAAAATGTTTGATCCATTTGTTAAGTCAAAATCTCTGAGAAGTCCTCTTGGTTATA 959
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 925 TTAGGAAAATGTTTGATCCATTTGTTAAATCAAAATCTTTGAGAAGTCCTCTTGGTTATA 984
Query 960 TAGGAGAATCAGGTGATCAGTTCAAGTTGGGGAGGAACAGTGAGCGTTGCAAATCTATGT 1019
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 985 TAGGAGAATCAGGTGATCAGTTCAAATTGGGGAGGAACAGTGAGCGTTGCAGATCTATGT 1044
Query 1020 TGAGTGACTACTCGAATATTCATAAAAGATCAAATCTTTGCGCTTGCCCTCCTCCAGTTG 1079
||||||||||||| || |||||||||||||| ||||||| | | |||||||||||||
Sbjct 1045 TGAGTGACTACTCAAACATTCATAAAAGATCGAATCTTT--G--T--CCTCCTCCAGTTG 1098
Query 1080 TCAATAAGGATTATACTTCGGTGCTGAAATCTTCCCCGGTCCATCTACATTGCCGTCTCA 1139
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1099 TCAATAAGGATTATACCTCGGTGCTGAAATCTTCCCCGGTTCATCTACATTGCCGTCTCA 1158
Query 1140 AGATGGAAAGCAAGAATGGATTGCCGGTTTTTCAGTTTGTGTCCGACTCTCCTGAGGAGG 1199
|||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |
Sbjct 1159 AGATGGAAAGCAAGAATGGATTACCGGTTTTTCAGTTTGTTTCAGATTCTCCTGAGGAAG 1218
Query 1200 TTTACGCCGCAAAGACGTGGAAATCTGACAATGGTTCTACTTGGGTATATACATTTTCAT 1259
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TTTACGCTGCAAAGACGTGGAAATCTGACAATGGTTCTACTTGGGTATATACATTTTCAT 1278
Query 1260 CTGCTGGAAGCAGAAAAAGGAGCAGTGCTAGTGTGCGGGGTTTGAACGATGTTACTAAAG 1319
|||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 1279 CTGCTGGAAGCAGAAAGAGGAGCAGTGCTAGCGTGCGGGGTTTGACCGATGTTAGTAAAG 1338
Query 1320 AATCTTTGCTGGTGGCTCAGATGCAAGTTTCTTGTAA-ATTGTGCACTGAAGTAAGAAAA 1378
||||||||||||||||||||||||||||| | ||||| | |||| | ||||||||||||
Sbjct 1339 AATCTTTGCTGGTGGCTCAGATGCAAGTTACCTGTAAGA-TGTGTTCAGAAGTAAGAAAA 1397
Query 1379 AAGGGACAAGATCCAGAAACTTTGATGGTAAATGAGTTTGTTTTGTTTGATATTGCACAA 1438
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1398 AAGGGACAAGATCCAGAAACTTTGATGGTGAATGAGTTTGTTTTGTATGATATTGCACAA 1457
Query 1439 GCAAGACGAAGTATCTCCACAAAGGAAGATCAATCACTACCACTTGATATGGTTAATAAT 1498
|||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1458 GCAAGAAGAAGTGTCTCCACAAAGGAAGATCAATCACTACCACTTGATACGGTTAATAAT 1517
Query 1499 GCCTCCAAGAACTCTGCTAAACCAGACTCAGAGATAAGAAATAACTCAATGTCTGGGGAT 1558
|||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1518 GCCTCCAAGAACTCTGTTAAATCAGACTCAGAGATAAGAAATAACTCAATGTCCGGGGAT 1577
Query 1559 ACTTCTGATACACTGAAGCAGAGATGTCAGCCGAGACGCACATCTCAAAGCTATGATCTT 1618
|||| |||||| |||||||||||| |||||| | | | |||||||||||||||||||||
Sbjct 1578 GCTTCGGATACAATGAAGCAGAGATCTCAGCCTAAAAGAACATCTCAAAGCTATGATCTT 1637
Query 1619 GAGGCTTCCAATGGAACAAACCCGTGGTCAGCTACAGATTTGCATCCTGACCTTGAGATC 1678
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1638 GAGGCTTCAAATGGAACAAACCCGTGGTCAGCTGCAAATTTGCATCCTGACCTTGAGATC 1697
Query 1679 GCGGCTATAATTATTCAAGACACTATTGAGAAGAGAGAAAGCTTAAAATATAGAAGAGGT 1738
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 GCAGCTATAATTATTCAAGACACTATTGAGAAGAGAGAAAGCTTAAAATATAGAAGAGGT 1757
Query 1739 GACAAAAGGTTGATGGAGAAAACTAATCTTCTTGGTCTTTCTCCAATTGAGGAGGAGAAA 1798
|||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 1758 GACAAAAGACTGATGGAGAAAACTAATATTCTTGGTCTTTCTCCAATAGAAGAGGAGAAA 1817
Query 1799 AAGGAGTTATATGGCAGCAGAAGTTCAGAAAAACTGAAGGTTGTAATCCCAAGGGGAAAC 1858
|||||||| | |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1818 AAGGAGTTGTTTGGCAGCAGAAGTTTAGAAAAACTGAAGGTTGTAATCCCGAGGGGAAAC 1877
Query 1859 CACGGGTTACCAACTACCGAAAACTCTTGTCCCTCGCCTTTGATTCAGCGATGGAGGTCA 1918
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1878 CACGGGTTACCAACTACCGAAAACTCTTGTCCTTCGCCTTTGATTCAGCGATGGAGGTCA 1937
Query 1919 GGAGGCGGTTGTGACTGTGGTGGTTGGGACATGGCTTGTCCACTTATGGTTATTGGAAAT 1978
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1938 GGAGGCGGTTGTGACTGTGGTGGTTGGGACATGGCTTGTCCACTTATGGTTCTTGGTAAT 1997
Query 1979 CCTCGTATCTCATGTTCTCATGATCAGCCTCTTGTAGACAATCAACATCCTTTGCAACTA 2038
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1998 CCTCGTATCTCATGTTCTCATGATCAGCCTCTTGTAGAAAATCAGCATCCTTTGCAACTA 2057
Query 2039 TTTGTCCAGGGTGCTAAAGAGCATATACCAGCTTTGTACATGTCATTTGTTGAGGAAGGG 2098
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2058 TTTGTCCAGGGTGCTAAAGAACATATACCAGCATTGTACATGTCATTTGTTGAGGAAGGA 2117
Query 2099 CAATACGATGTTCATTTCCACGCGCAGTTATCAACATTGCAAGCATTCTCCATCTGTGTT 2158
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 CAGTACGATGTTCATTTCCACGCGCAGTTATCAACATTGCAAGCATTCTCCATCTGTGTT 2177
Query 2159 GCCATATTACATAACACGGAAGTCTCAGATAGTTACAGAAATGGCGAGAATGTACAACAG 2218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2178 GCCATATTACATAACACGGAAGTCTCAGATAGTTACAGAAATGGCGAGAATGTACAACAG 2237
Query 2219 TTATCGCATTGCAACTCGTTGAAAATGCTGATTGATGATGATGTTCAGTTCTTAGTTGAA 2278
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 TTTTCGCATTGCAACTCGTTGAAAATGCTGATTGATGATGATGTTCAGTTCTTAGTTGAA 2297
Query 2279 GCAGTAACAGAGGAAGAAGAAAAGATAGTCCCTAAGCCTCTGAAAGAAGCTGTGACCGCT 2338
||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 2298 GCAGTAACAGAGGAAGAAGAA--G-T---CCCTAAGCCTCTGAAAGAAGCTGTGACCGCT 2351
Query 2339 CTTCAATCCTACATGCCGAATCCTCCTTTCTCGCCAATCTCCCGAGTGTAGTCTGTG-TG 2397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2352 CTTCAATCCTACATGCCGAATCCTCCTTTCTCGCCAATCTCCCGAGTGTAGTCTGTGATG 2411
Query 2398 CTTTGAATTCTT-CTTTTGTGTCGTGAGTTGGCGATAAGAA--GA-GA--AGAGAAGGTT 2451
|| | | | || | || | ||||||||||||||||| || || ||||||||||
Sbjct 2412 CTATCACTA-TTGCAGGTGCATT-TGAGTTGGCGATAAGAAAAGAAGAGGAGAGAAGGTT 2469
Query 2452 GGTCTTCAACTTCTCCGACAAAGCGCAACCATGAAGCAGCAGATTCGCGGGACAAGTTAG 2511
||||| ||||||| |||| |||||||||||||||||||| ||| |||| ||||||| |||
Sbjct 2470 GGTCTCCAACTTCCCCGATAAAGCGCAACCATGAAGCAGTAGACTCGCCGGACAAGCTAG 2529
Query 2512 AG--CTTAAAGATGGGATGGTCTCTGATTTTCAGACTGAGAAAGG----CGTCACATTCT 2565
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2530 AGAGCTTAA-GATGGGATGGTCTCTGATTTTCAGACTGAGAAAGGAAGGCGTCACATTCT 2588
Query 2566 TTGTTGTATCATTTATTTATTCTTCTGAGTAGGATCTAGGCAAAAGAAAAAGCCAAACTG 2625
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2589 TTGTTGTATCATTTATTTATTCTTCT---TAGGATCTAGGCAAAAGAAAAAGCCACACTG 2645
Query 2626 TTCATATTGTAAGGTAGCAAATGGGAGGTGCCCAATTTGGTTAGAGGTCTTATAAGCGTA 2685
|||||||||||||||||||| ||||||||||| | |||||||||| ||||||| ||||||
Sbjct 2646 TTCATATTGTAAGGTAGCAAGTGGGAGGTGCCTA-TTTGGTTAGAAGTCTTATGAGCGTA 2704
Query 2686 GGGTTGGTAGATCCTT-aaaaaaaaGTTTTGTAACTTGTAGTGAATAATGGATCTTCTTC 2744
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2705 GAGTTGGTAGATCCTTCAAAAAAAAGTTTTGTAACTTGTAGTGAATAATGGATCTTCTTC 2764
Query 2745 TTCTCTCTCCAGTC 2758
||||||||||||||
Sbjct 2765 TTCTCTCTCCAGTC 2778
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 GTGTGAGAGATAGTGACTGCGAGAGAGA 28
||||||||||||||||||||||||||||
Sbjct 14 GTGTGAGAGATAGTGACTGCGAGAGAGA 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137005921333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5