BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489977

Length=168
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11510.1 | Symbols: RALFL28 | ralf-like 28 | chr4:6984051-69...   217    3e-56


> AT4G11510.1 | Symbols: RALFL28 | ralf-like 28 | chr4:6984051-6984308 
REVERSE LENGTH=258
Length=258

 Score =  217 bits (117),  Expect = 3e-56
 Identities = 152/169 (90%), Gaps = 2/169 (1%)
 Strand=Plus/Plus

Query  1    GCAAAAGACATTGGCTATCCAGGAATAGGACGAGGCGATCGCCAACCAGGATGTGATCAT  60
            ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  91   GCAAATGAGATTGGCTATCCAGGAATGGGACGCGGCGATCGCCAACCAGGATGTGATCAT  150

Query  61   GGCAATTGTCCACCCGACCAACCGGCGAATCCGTACCATCGGGGTTGTGAAATAGCAAAA  120
            ||||| ||||||||||| ||||||||||||||||||||||| || ||||||| | |||| 
Sbjct  151  GGCAACTGTCCACCCGATCAACCGGCGAATCCGTACCATCGAGGATGTGAAAAATCAAAG  210

Query  121  AGATGTCGTGGTCCATCTCCACCAGTTCCTTC-TCAAAAGATGATATAA  168
            |||||||||||||||  |||||||| || ||| || |||||||||||||
Sbjct  211  AGATGTCGTGGTCCAGATCCACCAGCTC-TTCCTCGAAAGATGATATAA  258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7293695895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5