BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489979
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11570.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 2152 0.0
> AT4G11570.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr4:7004333-7006081 FORWARD LENGTH=1476
Length=1476
Score = 2152 bits (1165), Expect = 0.0
Identities = 1337/1418 (94%), Gaps = 20/1418 (1%)
Strand=Plus/Plus
Query 1 GAATCACAAATAAACCCAATTCAGGAAAAAGATTTCATCTTTCAG--TTT--TTCATCTA 56
||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 1 GAATCACAATTAAACCCAATTCAGGAAAAAGATTTCATCTTTGAGTTTTTCATTCATCTA 60
Query 57 GTCGGTTGTTTCCTTTTC-CAGGTTTCAATCGATTGAGAATCATAGATTGGTAGTGATTT 115
|||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||||
Sbjct 61 -TCGGTTGTTTCC-ATTCTCAGGTTT---T-GATTGATAATCATAGATTGGTAGTGATTT 114
Query 116 GGGAGTTTCTTGATTCTCTCATCATGGCGGATGCTATTGGTGCTGTATCTTTGGTGGGTC 175
||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 115 GGGAGTTTCTTGATTGTGTAATCATGGCGGAGGCTATTGGTGCTGTATCTTTGGTGGGTC 174
Query 176 ATCGACCGTCGATTGTGAGGATTACTGTGAAGAATGAATCGAAAACGCAGAAATCACAGA 235
||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 175 ATCGACCTTCAATTGTGAGGATTACAGTGAAGAATGAATTGAAAACGCAGAAATCACAGA 234
Query 236 ACATTGTTCGATTTCCGGTGAAGGTAGATTATAGTGCCAAAGGGGTTCTCTCTCATTTGA 295
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 235 GCATTGTTCGCTTTCCGGTGAAGGTAGATTATAGTGCGAAAGGTGTTCTCTCTCATTTGA 294
Query 296 TGATGCAGAGTGTGAAAAAGAATCAAATGTCGGTGTTCCCGATCAGGGCTCTTGCTATGG 355
||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 295 TGACGCAGAGTGTGAAAAAGAATCGAATGTCGGTGTTTCCGATCAGGGCTCTTGCTATGG 354
Query 356 AATTGACGAAAGAGAAGAAGAAAGACGAGCGGTTACCGAAAACTTGGAATTATCTTGATT 415
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 355 AATTGACGAAAGAGAAGAAGAAAGACGATCGGTTACCGAAAACTTGGAATTATCTTGATT 414
Query 416 CTGGTGCGGATGATAAGCCCAGTTTATGGCCTCCTGAGAACAAAGCTGATAAGCCTTCAT 475
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTGGTGCTGATGATAAGCCTAGTTTATGGCCTCCTGAGAACAAAGCTGATAAGCCTTCAT 474
Query 476 TGCACAATCCTTTACTTAGGCAAGAGCGGATGGGTTGTGGTTGGTTAGGTGCGATATTTG 535
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 TGCATAATCCTTTACTTAGGCAAGAGCGGATGGGTTGTGGTTGGTTAGGTGCTATATTTG 534
Query 536 AGTGGGAAGGAGTATTGATTGAAGACAACCCTGACCTCGATAACCAATCATGGCTGACGT 595
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||| || |
Sbjct 535 AGTGGGAAGGAGTATTGATTGAAGACAATCCTGACTTGGATAACCAATCATGGCTTACTT 594
Query 596 TAGCTCAGGAAGAAGGGAAATCTCCTCCTCCAGCTTTTATGCTCAGACGTGTTGAAGGGA 655
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 595 TAGCTCAAGAAGAAGGGAAATCTCCTCCTCCGGCTTTTATGCTCAGACGTGTCGAAGGGA 654
Query 656 TGAAAAACGAGCAGGCGATATCTGAGGTTCTGTGTTGGTCGAGAGATCCTGTTCAAGTGA 715
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGAAGAACGAGCAGGCCATATCTGAGGTTCTGTGTTGGTCGAGAGATCCTGTTCAAGTGA 714
Query 716 GAAGGATGGCTAAACGTAAAGAAGAGATCTTTAAAGCACTACATGGAGGAGTGTATAGAC 775
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 GAAGGATGGCTAAGCGTAAAGAAGAGATCTTTAAAGCTCTACATGGAGGAGTGTATAGAC 774
Query 776 TAAGAGATGGGTCGCAGGAGTTTGTGAATGTCTTGATGAATAATAAGATCCCAATGGCTT 835
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 775 TAAGAGATGGGTCGCAGGAATTTGTCAATGTCTTGATGAATAATAAGATCCCTATGGCTT 834
Query 836 TGGTATCGACTCGTCC-CAGGGAAACATTAGAGAATGCAGTTGGATCGATAGGTATTC-G 893
|||||||||||||||| | |||||||||| ||||||||||||||||||||||||| || |
Sbjct 835 TGGTATCGACTCGTCCTC-GGGAAACATTGGAGAATGCAGTTGGATCGATAGGTA-TCAG 892
Query 894 AAAGTTCTTCAGTGTGATAGTTGCATCAGAAGATGTTTACAGAGGTAAACCGGATCCTGA 953
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 893 AAAGTTCTTCAGTGTGATAGTTGCATCGGAAGATGTTTACAGAGGTAAACCAGATCCTGA 952
Query 954 GATGTTTATTTACGCAGCACAGCTTCTTGATTTCATTCCAGAACGTTGCATTGTATTTGG 1013
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 953 GATGTTCATTTACGCAGCACAGCTTCTTGATTTCATACCGGAACGTTGCATTGTATTTGG 1012
Query 1014 AAACTCAAACCAGACCATTGAAGCGGCCCACGATGGGAGGATGAAATGTGTAGCTGTGGC 1073
|||||||||||||||||| || || || ||||||||||||||||||||||| ||||||||
Sbjct 1013 AAACTCAAACCAGACCATAGAGGCAGCTCACGATGGGAGGATGAAATGTGTGGCTGTGGC 1072
Query 1074 GAGTAAACACCCCATTTATGAGCTTGGTGCAGCTGAGCTGGTGGTAAGAAGACTAGACGA 1133
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GAGTAAACACCCGATTTATGAGCTTGGTGCAGCTGAGCTGGTGGTAAGAAGACTAGACGA 1132
Query 1134 GTTATCGATTATTGATTTGAAGAAACTTGCAGATACCGATTTGACTGAATTCGAACCGGA 1193
|||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1133 GTTATCGATTATCGATTTGAAGAAACTTGCTGATACCGATTTGACAGAGTTCGAACCGGA 1192
Query 1194 ATTGGAGATGGAAAAGGAAGATGAGCGTGAACTGCCTTCATCGGCTGTAGCAGTTGATGA 1253
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1193 ATTGGAGATGGAAAAGGAAGATGAGCGTGAGCTGCCTTCATCGGCTGTAGCAGTTGATGA 1252
Query 1254 TAACTTCTGATGGAAGTGAGCTTCTGTAATATTGTACAGTTTTATGGATTTGGAATTCTT 1313
| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 1253 T---TTCTGATGGAAGTGATCTTCTGTAATGTTGTACAGTTTTATGGATTTGGA-TTCTT 1308
Query 1314 CCTCGTGTAATTCACACAATGTTATAGTTTCTGTGTATAATTGGAACAGGTTAAACGAGG 1373
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1309 CCTCGTGTAATTCACAAAATGTTATAGTTTCTGTGTATAATTGGAACAAGTTAAACGAGG 1368
Query 1374 GATAAATATAAA-TGTATACTCTTAGTTTTAATGTTGT 1410
|||||||||||| ||||||||| |||||||||||||||
Sbjct 1369 GATAAATATAAAATGTATACTCCTAGTTTTAATGTTGT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71083971720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5