BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489981
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11590.1 | Symbols: | F-box associated ubiquitination effec... 876 0.0
> AT4G11590.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:7008603-7009796 FORWARD LENGTH=1194
Length=1194
Score = 876 bits (474), Expect = 0.0
Identities = 587/639 (92%), Gaps = 17/639 (3%)
Strand=Plus/Plus
Query 443 GGAAAAAATGCAACGTCATGATGGTCGAACTCGAATATTACAAGTTACAACTATCATCTC 502
||||||||||||||||||||| ||||||||||| | | | | ||||||||||||||||
Sbjct 546 GGAAAAAATGCAACGTCATGACGGTCGAACTCG-A-A-T---A-TTACAACTATCATCTC 598
Query 503 AACATCAAGTAGTCACATTGGGAATTGAAAAGAAACAATGGAGAATGATTGATTATAGAA 562
||||||||||| || |||||||| || ||||||||| |||||||||||||||||||| ||
Sbjct 599 AACATCAAGTATTCCCATTGGGAGTTAAAAAGAAACCATGGAGAATGATTGATTATACAA 658
Query 563 CTCCTCACGGTCCTGTGCTTAACAGTGTGTGCATAGATGGAGTTATATATTATGTTGCGT 622
||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |
Sbjct 659 CTCCTCACGGTCCTGTGCTGAACAGTGTGTGCATAGATGGTGTTTTATATTATGTTGCTT 718
Query 623 TTACGGGC-ACTGATTTGTCACAGCTGAGCTTAATGAGATTCGATTTGGGGTCTGAAAAG 681
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTACGGGCGA-AGATTTGTCACAGCTGAGCTTAATGAGATTCGATTTGGGGTCTGAAAAG 777
Query 682 TTGGATCTTTTTACTAGTTTATCCGCGGACTTTCCAGCTGCATTTCTACATGGTTTCAAT 741
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 778 TTGGATCTTTTTACTAGTTTACCCGCGGACTTTCCAGCTGCATTTCTACATGGTTTCACT 837
Query 742 TTGATGAGCTACAAGGGGAAAGTAGCCTTAGCCACTAAAACTTCATTTAATGA-ATTTGA 800
|||||||| |||||||||||||||||||||||||||||||||| ||||| || ||| ||
Sbjct 838 TTGATGAGGTACAAGGGGAAAGTAGCCTTAGCCACTAAAACTTTATTTATTGGTATT-GA 896
Query 801 AGTGTGGATTTTGGATCAGCAAGTCGAAACTCATGGATGGTTGAAGAAAAGTTTCAGTAT 860
||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 897 AGTGTGGGTTTTGGATCAGCAAGCCGAAATTCATGGATGGTTGAAGAAAAGTTTCAGTAT 956
Query 861 CAAAGGTA--AGAAGTTGCTATATTCTG-G-TTTATTTATCACAGGCACTACTCATACAG 916
||||||| || || || | |||| || | |||||||||||||||||||||||||||||
Sbjct 957 CAAAGGTGTTAGGAGGTGGT-TATTTTGTGATTTATTTATCACAGGCACTACTCATACAG 1015
Query 917 GTGAGTTTGTTTTGGCACTACGGTTCTATTCTAATAACTTTTATGTTATCTATTACAATC 976
|||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1016 GTGAGTTTATTTTGGCACCACGGTTCTATTCTAATAGCTTTTATGTTATCTATTACAATC 1075
Query 977 CCGACACGAAAAGTTTTAGAAAAACCAAGGTTCAAGTACACGCAGACTATGAGTTCAAGC 1036
|||||||||||||||| ||||||||||||||| ||||||||| || |||||| |||||||
Sbjct 1076 CCGACACGAAAAGTTTAAGAAAAACCAAGGTTGAAGTACACGGAGGCTATGACTTCAAGC 1135
Query 1037 ATCGGGAAACAAAAGCAATGTTTTTTC-GGATTATGTAG 1074
|||||||||||||||||||| |||||| |||||||||||
Sbjct 1136 ATCGGGAAACAAAAGCAATGGTTTTTCCGGATTATGTAG 1174
Score = 331 bits (179), Expect = 8e-90
Identities = 251/285 (88%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 162 GTCTTCGTTGCAACCTCGTCTACTAGTCGTGTTTATTGATTTAGATAGACAACGGAACTG 221
|||||||||||| || ||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 219 GTCTTCGTTGCAGCCGCGTCTACTAGTCGTGTTTATTGATTTAAATAAACAATGGAACTG 278
Query 222 CGAAAATTGGTACTTCTTTTCGCTGTCTTCATCATCAACGTCTTATCTATCACGTGTTAC 281
|||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 279 CGAAGATTGGTACTTCTTCTCGCTCTCTTCATCAACAACGTCTTATCTATCACGTGTTAC 338
Query 282 ATGTCT-TTCTCCAGATTATGTGTACTATACTTATTATGTTAATGGCTTGATAAGCTTTG 340
||||| || ||||||||||||| ||||| || ||||||||||||||||||||||| ||
Sbjct 339 ATGTCCCTT-TCCAGATTATGTGCACTATTCTCATTATGTTAATGGCTTGATAAGCCATG 397
Query 341 GATATGGTCTAGAGAAATACATAGCTAACCCTAGCACCGGTAACCCTAGCACAGTTTTAG 400
|||||||||||||||||| |||| ||||||||||||||||||| | |||||||||||
Sbjct 398 GATATGGTCTAGAGAAATTCATAACTAACCCTAGCACCGGTAAATC---CACAGTTTTAG 454
Query 401 GTAGGGTCCAAACCAGGAGTACGGTCGCACA-TAGTTTTTTCGGG 444
| || |||||||||| |||| ||| || || | ||||||| |||
Sbjct 455 GGAGAGTCCAAACCAATAGTAAGGTTGCGCAAT-GTTTTTTGGGG 498
Score = 220 bits (119), Expect = 2e-56
Identities = 151/166 (91%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 1 ATGACGACAAGTCAATCCAAGAAGAG-CAA--AATAGAGAACAATTCTCAGTCTCTCGAA 57
|||||||||||||||| ||||||||| || |||||||||||||||||||||||| |||
Sbjct 1 ATGACGACAAGTCAATTCAAGAAGAGTAAATTAATAGAGAACAATTCTCAGTCTCTTGAA 60
Query 58 ATCTCGAGAGAGAAGAACTTCAATGACGTTCCTTTGGACGTTGCGATGGAGATATTTATG 117
|||| | |||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 61 ATCTTAAAAGAGAAGAACTTCAATGATGTTCCTTTGGACGTAGCCATAGAGATATTTATG 120
Query 118 AGATTGCCTGTGAAATCAGTAGTTAGGTTTCTCCTACTCTCAAAGT 163
||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 121 AGATTGCCTGTGAAATCCGTAGCTAGGTTTCTCCTACTCTCAAAGT 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5