BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489982
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11600.1 | Symbols: ATGPX6, PHGPX, LSC803, GPX6 | glutathion... 1269 0.0
> AT4G11600.1 | Symbols: ATGPX6, PHGPX, LSC803, GPX6 | glutathione
peroxidase 6 | chr4:7009769-7011375 REVERSE LENGTH=996
Length=996
Score = 1269 bits (687), Expect = 0.0
Identities = 881/972 (91%), Gaps = 24/972 (2%)
Strand=Plus/Plus
Query 1 TTTTGCAAATGCTTCGATCCTCAATTCGACTTCTCTATATAAGAAGAACCAATCCTCTCC 60
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 38 TTTTGCAAATGCTTCGCTCCTCAATTCGACTTCTCTATATAAGAAGAACCAGTCCTCTGC 97
Query 61 TTCGAAGTTTatcatcatcatcatcatcatcatcttcatcttcatcaAAACGATTCAATT 120
||||||| || | ||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 98 TTCGAAG-TT-T-ATCATCATCATCATCATCA---TCA---TCATCAAAACGATTCGATT 148
Query 121 CTGCGAAACCACTTTTCAATTCTCATCGGATTATTTCTCTTCCAATCTCTACAACGGGTG 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 149 CTGCGAAACCACTTTTCAATTCTCATCGGATTATTTCTCTTCCAATTTCTACAACGGGAG 208
Query 181 CTAAACTTTCTAGATCGGAACATTCAATGGCTACTTCTTCCGAACCCAAATCTATCTACG 240
||||||| ||||||||||| |||||||||||| |||||||||||||||||||| | ||||
Sbjct 209 CTAAACTATCTAGATCGGAGCATTCAATGGCTGCTTCTTCCGAACCCAAATCTCTTTACG 268
Query 241 ATTTCACCGTCAAGGATGCTAAGGGAAACGATGTTGATCTAAGCATCTACAAGGGGAAGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 269 ATTTCACCGTCAAGGATGCTAAGGGAAACGATGTTGATCTAAGCATCTACAAAGGGAAGG 328
Query 301 TTCTTTTGATTGTGAACGTTGCTTCTCAATGTGGCTTGACTAATTCGAACTATACTGAGC 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 329 TTCTTTTGATTGTGAACGTTGCTTCTCAATGTGGCTTGACTAATTCGAATTATACTGAGC 388
Query 361 TTGCACAGCTTTATGAGAAGTACAAAGACCATGGGTTT-GAGATTCTTGCGTTCCCGTGT 419
|||| ||||| |||||||||||||||| |||||| ||| |||||||||||||| ||||||
Sbjct 389 TTGCGCAGCTGTATGAGAAGTACAAAGGCCATGG-TTTCGAGATTCTTGCGTTTCCGTGT 447
Query 420 AACCAGTTTGGGAATCAAGAACCTGGTACAAATGAAGAGATTGTTCAGTTTGCTTGTACC 479
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 448 AACCAGTTTGGGAATCAAGAGCCTGGTACTAATGAAGAGATTGTTCAGTTTGCTTGTACT 507
Query 480 CGTTTCAAGGCCGAGTACCCGATTTTCGATAAGGTTGATGTGAACGGTGACAAAGCTGCC 539
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 508 CGTTTCAAGGCTGAGTACCCGATTTTCGACAAGGTTGATGTTAACGGTGACAAAGCTGCC 567
Query 540 CCAATCTACAAGTTTCTGAAATCAAGCAAAGGCGGGCTTTTTGGAGACGGCATCAAGTGG 599
||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 568 CCAGTCTACAAGTTTCTGAAATCAAGCAAAGGCGGGCTCTTTGGAGACGGCATTAAGTGG 627
Query 600 AACTTCGCTAAGTTCTTGGTTAACAAAGATGGAAATGTCGTCGACCGTTACGCGCCAACT 659
|||||||| |||||||||||| |||||||||||||||| ||||| |||| ||| ||||||
Sbjct 628 AACTTCGCAAAGTTCTTGGTTGACAAAGATGGAAATGTTGTCGATCGTTTCGCACCAACT 687
Query 660 ACTTCTCCTCTCAGCATTGAGAAGGACCTGAAGAAACTGTTGGGAGTTACTGCTTAAGCG 719
|| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 688 ACCTCACCTCTCAGCATTGAGAAGGATGTGAAGAAGTTGTTGGGAGTTACTGCTTAAGCA 747
Query 720 AGGAAAGAG-GCATTATTAGACAAATAAAAAGCTCATTAGTATTGTGTTACCAATACTGT 778
||| |||| |||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 748 AGGCAAGATTGCATAATTAGACAAATAAAA-GCTCATTAGTATTGTATTACCAATACTGT 806
Query 779 GTTGTAAGATGAGTTCGTGAATGTCTTTCTTATTT--CCTCGGTACAGTTATAATCCGTT 836
|| ||||| ||||||||||| ||| | ||| | || || |||| ||||||||||||
Sbjct 807 GTAGTAAGCTGAGTTCGTGAGTGTGTGCCTT-TGGGACCGCG-TACAATTATAATCCGTT 864
Query 837 TTT-AGCGGCCAAACTATGTAATAAACGTAGATCTAAATTTCAGATTTCCCTTTACGT-A 894
||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||| | |
Sbjct 865 TTTTAGCGGCCAAACTATGTAATAATCGTAGATCTAAATATCAGATTTCCCGTTACCTTA 924
Query 895 TAATTTTGAAT-ATATCAGAGTTATCAAAGCATGAAACTCT--CTCCTACAACAACCTAA 951
||||| || | | || |||| |||||||||||||| | |||||||||||||| ||
Sbjct 925 CAATTTGGA-TCAG-TCTTTGTTACCAAAGCATGAAACTGTGTCTCCTACAACAACCGAA 982
Query 952 CACTCTCTACAT 963
|| |||||||||
Sbjct 983 CAGTCTCTACAT 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5