BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489985
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11650.1 | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:70248... 1170 0.0
> AT4G11650.1 | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7024856-7026146
REVERSE LENGTH=1039
Length=1039
Score = 1170 bits (633), Expect = 0.0
Identities = 747/803 (93%), Gaps = 4/803 (0%)
Strand=Plus/Plus
Query 1 ATCACACATACACAAAAGAAGTAGAACTAAAAAATGGCAAACCTTC-CAGTCTTTACGTT 59
|||||||||||| ||||| |||||||||||||||||||||||| || |||| ||| ||
Sbjct 1 ATCACACATACATAAAAGTAGTAGAACTAAAAAATGGCAAACC-TCTTGGTCTCTACTTT 59
Query 60 CATATTCTCCGCACTTTTTCTCATCTCCACCGCGACAGCCGCTACATTCGACATCCTAAA 119
|||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||
Sbjct 60 CATATTTTCCGCACTTTTGCTCATCTCCACCGCAACAGCCGCCACATTCGAAATCCTAAA 119
Query 120 CTGATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCCGGAGGTGGCCGACGTCTAGATGC 179
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 CCAATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCTGGAGGTGGCCGACGTCTAGATGC 179
Query 180 CGGCCAGTCATGGAGGCTAGATGTCGCGGCCGGCACTAAAATGGCACGTATTTGGGGTCG 239
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 180 TGGCCAATCATGGAGGCTAGATGTCGCGGCGGGCACTAAAATGGCACGGATTTGGGGTAG 239
Query 240 GACCAACTGTAACTTTGACTCCTCGGGCCGTGGCCGATGCCAAACTGGTGACTGCAGTGG 299
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 240 GACCAATTGTAACTTTGACTCCTCAGGTCGTGGCCGATGCCAAACTGGTGACTGCAGTGG 299
Query 300 TGGACTTCAATGTACTGGTTGGGGACAGCCACCAAACACGTTGGCTGAATACGCTTTGAA 359
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TGGACTCCAATGTACTGGCTGGGGACAGCCACCAAACACGTTGGCTGAGTACGCTTTGAA 359
Query 360 CCAATTCAACAACTTAGACTTCTACGACATCTCACTTGTCGATGGCTTTAACATTCCTAT 419
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 360 CCAATTCAACAACTTAGACTTCTACGATATCTCACTTGTCGATGGATTTAACATACCTAT 419
Query 420 GGAGTTTAGCCCAACTAGCTCGAACTGCCATCGGATATTATGTACCGCAGACATAAATGG 479
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct 420 GGAGTTTAGCCCAACTAGTTCGAACTGCCATCGGATACTATGTACCGCAGACATAAACGG 479
Query 480 ACAGTGTCCGAACGTACTGAAAGCCCCAGGCGGATGCAACAACCCGTGTACGGTATTTCA 539
||| ||||| ||||| ||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 480 ACAATGTCCAAACGTGTTGAGAGCCCCAGGTGGATGCAACAACCCGTGTACTGTATTTCA 539
Query 540 GACGAACCAATACTGTTGTACGAACGGTCAGGGATCATGTAGCGACACTGAGTACTCAAG 599
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GACGAACCAATACTGTTGTACGAACGGTCAGGGATCATGTAGCGATACTGAGTACTCAAG 599
Query 600 ATTCTTCAAACAGAGATGTCCTGACGCCTACAGCTATCCACAAGACGACCCGACCAGCAC 659
|||||| || |||||||| |||||||| ||||||||||||||||| |||||||| |||||
Sbjct 600 ATTCTTTAAGCAGAGATGCCCTGACGCTTACAGCTATCCACAAGATGACCCGACTAGCAC 659
Query 660 TTTCACTTGCACCAACACTAACTACAGGGTCGTGTTTTGTCCTAGAG-CTAGGGTCGCTG 718
|||||||||||||||||||||||||||||||||||||||||| || | ||||| ||| ||
Sbjct 660 TTTCACTTGCACCAACACTAACTACAGGGTCGTGTTTTGTCCAAG-GTCTAGGCTCGGTG 718
Query 719 CTACTGGATCCCACCAGCTCCCGATCAAGATGGTCACAGAGGAGAATTATTAGACTGGTA 778
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 719 CTACTGGATCCCACCAGCTCCCGATCAAGATGGTCACCGAGGAGAATTAATAGACTCGTA 778
Query 779 TCTACTGTATAtgtgtgtgtgtg 801
|||||||||| ||||||||||||
Sbjct 779 TCTACTGTATGTGTGTGTGTGTG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5