BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489986
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11655.1 | Symbols: | Uncharacterised protein family (UPF04... 965 0.0
> AT4G11655.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr4:7038585-7039923 FORWARD LENGTH=796
Length=796
Score = 965 bits (522), Expect = 0.0
Identities = 625/674 (93%), Gaps = 9/674 (1%)
Strand=Plus/Plus
Query 1 TTTGATGAAAGAGCTTAAAGATCACGTTGTAGTGATGGCCTATGGA-C--CATCGGAGGG 57
|||||||||||||||||||||||||||||||||||| | |||||| | |||||||||
Sbjct 2 TTTGATGAAAGAGCTTAAAGATCACGTTGTAGTGATCACTTATGGACCATCATCGGAGGC 61
Query 58 TTCAGTAACGGCGTCGCCTGTCTCTCAACAGACGCCGTCTTTGTTTGCATACTCTATAAC 117
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 62 TTCAGTAACGGCGTCACCTGTCTCTCAACAGACGCCGTCTTTGTTTGCATACTCCGTAAC 121
Query 118 GCCTTCAACATCAAGATTCAGCTCACGGCGAGCATCGGTTCATGTCATCGGTTTGGTTCT 177
||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 122 GCCGTCAGCATCAAGATTCAGCTCACGGCGAGCATCGGTTCATGTTATCGGTTTGGTTCT 181
Query 178 CCGGTTTTTAACTTTGGTTCTATGTTTTGTCTCTGCTCTTTCGTTAGCAGTGAATGTTCA 237
||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 182 CCGGTTTATAACTATGGTTCTATGTTTCGTCTCTGCTCTTTCGTTGGCAGTGAATGTTCA 241
Query 238 TA-GGCCTTCGAGGAGATATCTGACACAGAACTCCTCGAGTTTTGCTTCATATCCTGAAC 296
| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 242 -ACGGCCTTCGAAGAGACATCTGACACAAAACTCCTCGAGTTTTGCTTCATATCCTGAAC 300
Query 297 TATTGTATTGTTTTGTTGTAGCAGTGATAGGATTCGTGTATACATGTTTGCAAACATTCA 356
| ||||||||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TGTTGTATTGTTTTGGAGTTGCAGTGATAGGATTCGTGTATACAAGTTTGCAAACATTCA 360
Query 357 AAGGAGTTTGTGATATTACTCACAGAGGAATTTTAATCTCTGAGCCTCTTTCGGATTATA 416
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct 361 AAGGAGTTTGTGATATTACTCACAGAGGAGTTTTAATCTCTGAGCCTCTCTCGGATTACA 420
Query 417 TCAGCTTCATATTTGACCAGGCTATATGTTACCTACTAGTATCATCTTCTTCGGTGGCAA 476
||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct 421 TCAGCTTCATATTTGACCAGGTTATATGTTACCTACTAGTGTCATCTTCTTCCGTGGCAA 480
Query 477 TTGCGTGGATCCAACATATAAACGAGGATGCGATAAACACACTAAGAAATAATTCCATAA 536
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 481 TTGCATGGATCCAACATATAAACGAGGATGCGATAAAAACACTAAGAAACAATTCTATAG 540
Query 537 TTTCAGTTTCAATGTCATTCTCTGC-TTTCTTTGTTTTGACACTCTCTAGCCTCTTGTCA 595
||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||
Sbjct 541 TTTCAGTTTCAATGTCATTCTCTGCATTT-TTGGTTTTGACACTCTCTGGCCTCTTGTCA 599
Query 596 GGTTATAAGCTTTGCAAGAGATTTATGTGGTAATTAAATCTTGTAAAGGGTTTTTATATT 655
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 600 GGGTATAAGCTTTGCAAGAGATTTATGTGGTAATTAAATCTTGTAATT--TTTTTATACT 657
Query 656 CATGTCATGTTTAA 669
|| |||||||||||
Sbjct 658 CAAGTCATGTTTAA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5