BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489990
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protei... 2588 0.0
AT4G00752.1 | Symbols: | UBX domain-containing protein | chr4:... 67.6 4e-10
> AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protein
| chr4:7071860-7075501 FORWARD LENGTH=2035
Length=2035
Score = 2588 bits (1401), Expect = 0.0
Identities = 1626/1731 (94%), Gaps = 30/1731 (2%)
Strand=Plus/Plus
Query 1 TATGGCGACACCGAATCAGGAATCAATCGACACTTTCATCAGCATCACCGGCGCTTCAGA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 95 TATGGCGACACCGAATCAGGAAGCAATCGACACTTTCATCAGCATCACCGGCGCTTCTGA 154
Query 61 GGCCGTCGCTCTTCAGAAACTCGAGGAACATCGTGGTGATCTTAATCAAGCTGTGAATGC 120
|||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 155 CGCCGTCGCCCTTCAGAAACTCGAGGAGCATCGTGGTGATCTTAATCAAGCAGTGAATGC 214
Query 121 ATATTTCGGCGAGGGAGATCGAAATGTAGTAAGTGAAGCGCCGGTTAATATTTCTCG-TG 179
||||||| |||| |||||||||||||||||| |||||||||||||| | | | | ||
Sbjct 215 ATATTTCAGCGAAGGAGATCGAAATGTAGTACGTGAAGCGCCGGTT-A-A----T-GATG 267
Query 180 ATGATGAAATGGATATAGATGATGTGATTCCGCCTCCACAATCTCCTCTATCTATGTTCA 239
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 268 ATGATGAAATGGATATAGATGATGTGATTCCGGCTCCACAATCTCCTCTCTCTATGTTCA 327
Query 240 ATGCAGCTAGAACGA-TGG--G-CCATCCCTTTTCGCTTTTGGATTCAGACTTTGCTAGA 295
||||||||||||| | ||| | || ||||||||||||||||||||| ||||||||||||
Sbjct 328 ATGCAGCTAGAACAATTGGCCGTCC-TCCCTTTTCGCTTTTGGATTCGGACTTTGCTAGA 386
Query 296 CGTGTATTTGATAGCGATCCTCTTATGCCACGCCCTCCGTTTGTTAGTTATCCCAGGGAG 355
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 387 CGTGTATTTGATAGCGATCCTCTTATGCCACGCCCTCCGTTTGTTAGTCATCCTAGAGAG 446
Query 356 GTTAGGCAGATACCAATAGAGGTTAAGGATAGCAGTGGGCCATCAGGACGATCTAGTGAT 415
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 447 GTTAGGCAGATACCTATAGAGGTTAAGGATAGCAGTGGGCCATCTGGACGATCTAGTGAT 506
Query 416 GCTCCTACTATTGAAGATGTGACAGAAACAACACATGTTCAGGGTCCAG---CTACTCAA 472
|||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||
Sbjct 507 GCTCCTACTATTGAAGATGTGACAGAAACAGCTCATGTTCAGGGTCCAGTAACTACCCAA 566
Query 473 GGAACTGTTATTATAGATGAAGAGAGTGATGATGATATTCCTTTTGCTCCAATGGGACGA 532
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 567 GGAACTGTTATTATTGATGAAGAGAGTGATGATGATATTCCTTTTGCACCAATGGGACGA 626
Query 533 AGTAGGCAAGACAGACCTGCTGGTTCTGAAGCC---AATAATAATCAAGATTACAATGAT 589
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 627 AGTAGGCAAGACAGACCTGCTGGTTCTGTAGCCAATAATAATAATCAAGATTACAATGAT 686
Query 590 ATAGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGATGGAGGCTGAGGGATCA 649
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 687 ATAGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGAAAGAGGCTGAGGGATCA 746
Query 650 AATAACCCTTTACTTGGAGAGAGGCCACCTCACATGGAAGATGATGATGACATAGCAAAA 709
| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 747 AGTAACCCTTTACTTGAAGAGAGGCCACTTCACATGGAAGATGATGATGACATAGCAATA 806
Query 710 GCTGTTACGATGTCACTGAAGTCAGCAGAGGAAGAAGTTTTGCGCAGTCAAGAGCT-TAT 768
|||||||| |||||| |||||||||| ||||||||||||||||||||||||| | | ||
Sbjct 807 GCTGTTACAATGTCATTGAAGTCAGCGGAGGAAGAAGTTTTGCGCAGTCAAG-GGTATAA 865
Query 769 GCCCTCAACCTCAGAAATAGGAGCTTCTGAAGTGACTGCTGCTCAAGGACCTCAGGATAC 828
| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 866 GGCCTCAACCTCGGAAATAGGAGCTTCTGCAGTGACTGCTGCTCAAGGACCTCAGGATAC 925
Query 829 CCAAGCCCTGAATGGAAGATTGGCGGCACCTAGCTCACCATTTGATGATGACTCTGATGA 888
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 926 CCAGGCCCTGAACGGAAGATTGGCAGCACCTAGTTCACCATTTGATGATGACTCTGATGA 985
Query 889 CGTTGATGAGCAACCTCTTGTTAGACACAGGCCAAGACGTGCAGCATCCGGATCTCTGGC 948
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TGTTGATGAGCAACCTCTTGTTAGACACAGGCCAAGACGTGCAGCATCCGGATCTCTGGC 1045
Query 949 TCCACCTAACGCTGATCGTTCCCGGAGTGGGAGTCCTGAAGAAGAAGGTGCAAGTAGTAA 1008
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1046 TCCACCTAACGCTGATCGTTCCCGGAGTGGGAGTCCTGAAGAAGAACATGCAAGTATTAA 1105
Query 1009 TCCACCGGAGCGTGGCAGTGGGTTTCCTTCTGAGTGGGGAGGCATTTCATCTGAGGAACA 1068
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TCCAGCGGAGCGTGGCAGTGGGTTTCCTTCTGAGTGGGGAGGCATTTCATCTGAGGAACA 1165
Query 1069 TGATGAAGCTGTCATGCTTGAGGCAGCCATGTTTGGTGGCATTCCTGAAACTGGATATAA 1128
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TGATGAAGCTGTCATGCTCGAGGCAGCCATGTTTGGTGGCATTCCTGAAACTGGATATAA 1225
Query 1129 TCATCTTCCATATAT-ACCTCCTCAGCCGTGGGCACAACCCCGTCCACCCTCACCTTCAC 1187
||||||||||| | | ||||||||||||| |||| ||||| ||||||||||||||||| |
Sbjct 1226 TCATCTTCCAT-TCTTACCTCCTCAGCCGAGGGCCCAACCACGTCCACCCTCACCTTCGC 1284
Query 1188 TGACAGCTCAGAGGTTGATACGGGAACAGCAGGATGATGAGTATGTTGCATCCCTGCAAG 1247
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1285 TGACAGCTCAGAGGTTGATACGGGAACAGCAGGATGATGAGTATGTTGCGTCCCTGCAAG 1344
Query 1248 CTGACCGAGATAAAGAAATGAAATCCATAAGAGATGCTGAGGCACGTCAGCTagaggaag 1307
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1345 CTGACCGAGATAAAGAAATGAAGTCCATTAGAGATGCTGAGGCACGTCAGCTAGAGGAAG 1404
Query 1308 aaactgctagaaaggcttttctggaggaagaaaagaaaaaagaggaagaagctcaaagaa 1367
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 AAACTGCGAGAAAGGCTTTTCTGGAGGAAGAAAAGAAAAAAGAGGAAGAAGCTCAAAGAA 1464
Query 1368 aaCTCGAGGAGGAACAGGAGCTAGATAGGCAATTAGACGCAAAAGAAGCTTCTCTACCTA 1427
||||||||||||||||||||||||| || ||| |||| ||||||||||| ||| ||||||
Sbjct 1465 AACTCGAGGAGGAACAGGAGCTAGAAAGACAACTAGATGCAAAAGAAGCGTCTTTACCTA 1524
Query 1428 AGGAGCCTCAAGCAGACGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATGGCA 1487
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1525 AGGAGCCTCAAGCTGATGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATGGAA 1584
Query 1488 CACGCCGTGGCCGCCGGTTCCTTAGATCTGACAAACTCCAATCCCTTTTCAACTTTATAG 1547
|||| || |||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1585 CACGTCGGGGCCGCCGGTTCCTTAAATCTGACAAACTCCAAACCCTTTTCAACTTTATAG 1644
Query 1548 ACATTGCCAGAGTGGTGAAACCCAACACTTATAGACTGGTGAGGCCATATCCGAGGCATG 1607
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1645 ACATTGCCAGAGTGGTGAAACCCAACACTTACAGACTGGTGAGGCCATATCCGAGGCATG 1704
Query 1608 CGTTTGGAGATGGAGAAAGTGAGTCGACTCT-AAACGATCTTGGATTGACCAGCAAACAA 1666
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1705 CGTTTGGAGATGGGGAAAGTGAGTCGAC-CTTAAACGATCTTGGATTGACCAGCAAACAA 1763
Query 1667 GAAGCATTATTCCTTGAGCTTATCTGAGCAAGTTTAAAGTTCTTAAATATA 1717
|||||||| |||||||||||||||| || ||||| | |||||||||||
Sbjct 1764 GAAGCATTGTTCCTTGAGCTTATCT-AGT---TTTAA-GCTCTTAAATATA 1809
> AT4G00752.1 | Symbols: | UBX domain-containing protein | chr4:317564-320895
REVERSE LENGTH=1719
Length=1719
Score = 67.6 bits (36), Expect = 4e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 592 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGATGGA 636
||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 666 AGAGGAAGAAATGATCAGAGCTGCCATTGAGGCCTCGAAGAAGGA 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86043734130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5