BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489994
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2078 0.0
AT4G23020.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 60.2 5e-08
> AT4G11780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G23020.2);
Has 550 Blast hits to 387 proteins in 92 species: Archae -
0; Bacteria - 32; Metazoa - 132; Fungi - 122; Plants - 80;
Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink). |
chr4:7085970-7088212 FORWARD LENGTH=1422
Length=1422
Score = 2078 bits (1125), Expect = 0.0
Identities = 1338/1439 (93%), Gaps = 22/1439 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCGGCGATCAGTTCCTCTGACCATCGTCTATCGACAAGCAAGAGACGTTTGAAG 60
||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGATGATCAGTTCCTCTGATCACCGTCTTTCGACAAGCAAGAGACGTTTGAAG 60
Query 61 CCATTGATGCTAAGAGATTACTTACTCGATGATCTCAGTTCTTGTTCATCCAACGGCTTC 120
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCATTGCTGTTAAGAGATTACTTACTCGATGATCTCAGTTCTTGTTCATCCAACGGTTTC 120
Query 121 AAATCATTCCCACGTCGTCAAACTCCCTCTTCATCTTCCACCGTTCGTCGTCTTCTTGAC 180
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 AAATCATTCCCACGCCGTCAAACTCCTTCTGCATCTTCCACCGTTCGTCGTCTTCTTGAC 180
Query 181 GCCGAGATCAAACGGTCAGGATTGATCcatcatcatcatcatcaCAACAAACAACAACGT 240
||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||| ||||
Sbjct 181 GCCGAGATCAAACGGTCAGGATTTATCCATCATCATCATCA-CAC--CAAGCAACCACGT 237
Query 241 CTCACCAGAAGATCAAGCCGTACAACTTGTGGAACGGCGATAAGTCACGCCGTTCATAAA 300
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTCACTAGAAGATCAAGCCATACAACTTGTGGAACGGCGATAAGTCACGCCGTTCATAAA 297
Query 301 GCTTCGACGGCGTTTCTTAAACTTTTGCCGTTCCCTTCTTCCGCCGTTAAAAAACAAGGC 360
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 298 GCTTCAACGGCGTTTCTTAAACTTTTGCCGTTCCCTTCTTCCACCGTTAAAAAACAAGGC 357
Query 361 GTTTTCTCTAGAAGCTTCTCTAAACGGCTTTTAAGTAGAAGCTTCTGGAGAAAACCCGTC 420
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 358 GTTTTCTCTAGAAGCTTCTCTAAACGGCTTTTAAGCATAAGCTTCTGGAGAAAACCCGTT 417
Query 421 GTTA-GTCTATCTCGCCGTGATGTAACCGGAGATGGAGACGGAGAGATCCAATGGTGGAG 479
| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 G-TAGGTCAATCTCGCCGTGAAGTAACCGGAGATGGAGACGGAGAGATCCAATGGTGGAG 476
Query 480 ATCCGTCGCATACGAAGAGAGCTTAGATCAACGGTCGGATCTAATCTCTCAACTCTCCAC 539
||||||||| ||||||||||| |||||||||| || ||||| | |||||| |||||||
Sbjct 477 ATCCGTCGCGTACGAAGAGAGTTTAGATCAACAATCCGATCTGTTTTCTCAAATCTCCAC 536
Query 540 CACCGACGACAAAATAACATTTTCAATCTCAGCCGCTGCGATCACCACCGTGGAGGAGTT 599
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 537 CACCGACGACAAAATAACATTTTCAACCTCAGCCGCTGCGATCACTGTCGTGGAGGAGTT 596
Query 600 AATCTCCGGTGAGTCTTCGAGTTCCGGCAGCGAGTTTTTCACAAATTCATCATCGGAGGT 659
||||||||||| || ||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 597 TATCTCCGGTGACTCATCGAGTTACGGTAGCGAGTTTTTCACAAACTCATCATCGGAGGT 656
Query 660 TGTGCAGTCTTCTTCTTCATCGTTCTCTTCTTCGTCGAGCGGTGAATCTGAGGAAGTCTC 719
||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 657 TGTACAGTCTTCTTCCTCATCGTTCTCTTCTTCGTCGAGTGGTGAATCGGAGGAAGTCTC 716
Query 720 GAAG-AAAAACGACGCCGTGGAAGACGGGAATGAGAGCGGAGAGAGATTAAACGCACGTG 778
|| | | ||||||||||||||||||||| ||||||||||| || ||||| |||| |
Sbjct 717 -CAGCGAGATCGACGCCGTGGAAGACGGGAAGGAGAGCGGAGATAGTTTAAAGGCACACG 775
Query 779 ACTGTGACGGATCATCTGTCAACGGCAACAACAGCCTGTGTAACAGAAAGGAATGTGTGA 838
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 ACGGTGACGGATCATCTGTCAACCGCAACAACAGCCTGTGTAACAGAAAGGAATGTGTGA 835
Query 839 ATGAAGAGAAAGAACAACTCAGTCCAGTATCAATCTTAGAATGTCCTTTTAAAGACAATG 898
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 836 ATGAAGAGAAAGAACAACTCAGTCCAGTATCGATCTTAGAATGCCCTTTTAAAGA---TG 892
Query 899 GAAGTGATGATGAAGACGATGAGAA-CACTGATCAAAATGGTATACATGAGAAAATTGCA 957
| ||| || | |||||||| || |||||| ||||||| || | |||||||||||||
Sbjct 893 -A--TGACGA--A-GACGATGA-AATCACTGACCAAAATGATACATATGAGAAAATTGCT 945
Query 958 AGAAAAAGCAGGAGATTAAATGGTTTGGTACGGCTTGAGCCACTAGACTTGGATAAACGC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 AGAAAAAGCAGGAGATTAAATGGTTTGGTACGGCTTGAGCCACTAGACTTGGATAAACGC 1005
Query 1018 ATAAAGGAG-TATGTAGAGAGACAAGAAGAGTACTCATTTCACAAGCTAGAGACCGAAGA 1076
||| || || |||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 1006 ATAGAG-AGGTATGTAGAGAGACAAGAAGAGTACTCATATCACACTCTGGAGACGGAAGA 1064
Query 1077 GGACGAATCAGAAAACCAAGCAAACCGCTTGTTTGCTCTTGTGAAATTGAGAATCGGCGA 1136
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1065 GGACGAATCAGAAAATCAAGCAAACCGCTTGTTTGCTCTTGTGAAGTTGAGAATCGGCGA 1124
Query 1137 AACAAATGACCTACTAGCTTCCAAAGTAGCGGATAATCTATTGTTAGATTATCTTCAAGA 1196
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1125 AACAAATGACCTACTAGCTTCTAAAGTAGCGGATAATCTATTGTTAGACTATCTTCAAGA 1184
Query 1197 AGATAATATTGGGCCAAAAGAGGAGACATTAATGGTGAAGAAAGCAGAAGATTGGGTTAT 1256
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGATAACATTGGGCCAAAAGAGGAGACATTAATGGTGAAGAAAGCAGAAGATTGGGTTAT 1244
Query 1257 GGGTAGACAAGATGAGATGTTTATGAGTTGGGAAGTGAAAGA-GAAGAGAGAGGTTTATG 1315
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1245 GGGTAGACAAGATGAGATGTTTATGAGTTGGGAAGTGAAA-ACGAAGAGAGAGGTTTATG 1303
Query 1316 TGAAGGAAATGAAGTGGGGTTGCATTAAAGGAGATGAGAGAGAGAATGTGGTTGAAGAGT 1375
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1304 TGAAGGAAATGAAGTGGGGTTGCATTAATGGAGATGAGAGAGAGAATGTGGTTGAAGAGT 1363
Query 1376 TGGCTAATGGTTTCTTCACTTCCTTTGTGGATGAATTCATCTTCGACTTAGTGTTGTGA 1434
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1364 TGGCTAATGGTTTCTTCACTTCCTTTGTGGATGAATTCATCTACGACTTAGTGTTGTGA 1422
> AT4G23020.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G11780.1).
| chr4:12066173-12068538 REVERSE LENGTH=1613
Length=1613
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 283 AGTCACGCCGTTCATAAAGCTTCGACGGCGTT 314
||||||||||||||||||||||||||||||||
Sbjct 301 AGTCACGCCGTTCATAAAGCTTCGACGGCGTT 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5