BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489995
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11790.1 | Symbols: | Pleckstrin homology (PH) domain super... 977 0.0
> AT4G11790.1 | Symbols: | Pleckstrin homology (PH) domain superfamily
protein | chr4:7090353-7093475 FORWARD LENGTH=1702
Length=1702
Score = 977 bits (529), Expect = 0.0
Identities = 646/702 (92%), Gaps = 9/702 (1%)
Strand=Plus/Plus
Query 699 AGCCAACCTGGAGCATTCTCCAGCAATC-CTTCTGGTTTAACATCTAATAGCCAGACTGG 757
|||||||||||| | |||||||||| || | |||||| ||||||||||||||||||| ||
Sbjct 764 AGCCAACCTGGAACTTTCTCCAGCAGTCAC-TCTGGTATAACATCTAATAGCCAGACGGG 822
Query 758 ATCTTTTAGCAGTGGCCAGTTTTGT---TTAAAAAGCAGCCAACCAATTCTATC-TTCCG 813
||||||||| |||||||| ||| || ||||||||||||||||| ||| | |||||
Sbjct 823 ATCTTTTAGTAGTGGCCAATTTGGTCAGACAAAAAGCAGCCAACCAAGCCTA-CTTTCCG 881
Query 814 GCAGTCAAGCAGGAGCAATATCTAATAGCCAACCTTCTTATCAATTTTCTAATAATCAAC 873
||||||||||||||||||| |||| || ||||||||||| |||||||||||| | ||||
Sbjct 882 GCAGTCAAGCAGGAGCAATCTCTAGTAACCAACCTTCTTTTCAATTTTCTAACAGTCAAT 941
Query 874 CCCCTTTTACATCTGGAGTAACTCCAGTGTCCATACAGGCAAAGCGGGATTC-CACAGAT 932
||||||||||||||| |||| ||||||||||||||| |||||||| ||| || | |||||
Sbjct 942 CCCCTTTTACATCTGCAGTACCTCCAGTGTCCATACCGGCAAAGCAGGA-TCACTCAGAT 1000
Query 933 GATGCGGACGGTGAAGACGAACAACCTCAACCAAGCAGCCCATCTGTCAAAAAGGCTGAA 992
|||||||| |||| |||||||||| ||||||| ||||||||||||||||||||| | |||
Sbjct 1001 GATGCGGATGGTGGAGACGAACAATCTCAACCGAGCAGCCCATCTGTCAAAAAGACGGAA 1060
Query 993 GAGAAGGGTGTTACTGTGGTTCATGAAGTCAAATGCAAACTTTATGTCAAGTCAAATGAC 1052
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1061 GAAAAGGGTATTACTGTGGTTCATGAAGTCAAATGCAAACTTTATGTCAAGTCAAGTGAC 1120
Query 1053 CCAACGGATAAAGGGTGGAAAGATAAAGGAACTGGGAATCTCTACATAAAATGCAAAGAA 1112
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CCAGCAGATAAAGGGTGGAAAGATAAAGGAACTGGGAATCTCTACATAAAATGCAAAGAA 1180
Query 1113 GGCGTCGACAAGGGGACAAAAGAATCAAAACCCACAATTCTTGTCCGAAACGATGTTGGA 1172
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GGAGTCGACAAGGGGACAAAAGAATCAAAACCCACAATTCTTGTCCGAAACGATGTTGGA 1240
Query 1173 AAACTGCTTCTGAATGCACTACTGTACACGGGAATCAAGACGAGCCCACAGAAGAACGCC 1232
||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||
Sbjct 1241 AAACTGCTTCTGAATGCACTACTGTACGCTGGAATGAAGACAAGCCCACAGAAGAACGCT 1300
Query 1233 CTTGTTGCAATATTCCACTCCTCGGAGGATTCTAACGAGAATGTAACACCGAGAACCTTT 1292
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1301 CTTGTTGCAATATTTCACTCCTCGGATGATTCCAACGAGAATGTAACACCGAGAACCTTT 1360
Query 1293 CTGATAAGAACAAAGACCGCAGAAGCTAGAGATAAGTTAGCAACGGCCATCCAAGAATAC 1352
|||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1361 CTGATAAGGACAAAGAACGCAGAAGCTAGAGATAATTTAGCAACGGCCATCCAAGAATAC 1420
Query 1353 GCCCCTTCTTCATAGATTGCCCAAAGCCAGGTTGAGATCTTC 1394
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GCCCCTTCTTCATAGATTGCCCAAAGCCAGGTTGAGATCTTC 1462
Score = 861 bits (466), Expect = 0.0
Identities = 576/628 (92%), Gaps = 11/628 (2%)
Strand=Plus/Plus
Query 86 AATCATGAGAGGAGTTAAACGCGCCGCCGTCTCCGAATCAAACGAATCTTCCTTTAAGAA 145
||||||||||||||| |||||||||||| |||||||||| || || ||| ||||||||||
Sbjct 100 AATCATGAGAGGAGTAAAACGCGCCGCCATCTCCGAATCGAATGACTCTCCCTTTAAGAA 159
Query 146 TGCAAAACCAGTGGAAGGAATCTTATTTGGTACCCAGAAGAATTTAGCACTGATCCAACA 205
|||||||||||||||||||||||| |||||||| ||||||||| | | || ||| || ||
Sbjct 160 TGCAAAACCAGTGGAAGGAATCTTTTTTGGTACTCAGAAGAATGTGGTACCGATGCAGCA 219
Query 206 GAG-TCTATTAACACCAGCATCATTGGATAAACAGAGAGCTGAGTTAGCTAGGAAGCATG 264
||| || | ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 220 GAGTTC-AGTAACATCAGCATCATTGGATAAACAGAGGGCTGAGTTAGCTAGGAAGCATG 278
Query 265 TGAGAGCTCTTAATAACCAATTTGTAAGTTGGGTGCAGTTACAGCTGAAGAATCATCCTG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 TGAGAGCTCTTAATAACCAATTTGTAAGTTGGGTGCAGTTACAGCTGAAGAATCATCCTG 338
Query 325 ATGAACTTTGGGAAGATGGGATGACTGAGTACATTGCGCATGCGTCAAACATTCTGGAAA 384
|||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||
Sbjct 339 ATGAACTTTGGGAAGATGGGATGAATGACTACATTACGCATGCTTCAAACATTCTGGAAA 398
Query 385 AGTTTAAGGATGTGGTCAACTGGCTAAAAGAAAATAAGGGAAAGGGGGAGAATGTATCCC 444
|||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 399 AGTTTAAGGATGTGGTCAGCTGGCTTAAAGAAAATAAGGGAAAGGGGGAGAATTTATCCC 458
Query 445 CTGAATCTCGTGGAGCAGAGAAGAAATTAGTGGCTGAAGTCAAGAATAGTGATGTTAAGT 504
||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |
Sbjct 459 CTGAATCTCGTGGAGCAGAAAATAAATTAGTGGCTGAAGTCAAGAATACCAATGTTAAAT 518
Query 505 CAGTTTCAAATAATAG-CCTATTTGGTTCAAACAGTCAACCTGGGCA-CTTCTCAAACAA 562
|| ||||||| |||| ||| |||| |||||||| |||||||||| | ||||||||||||
Sbjct 519 CATTTTCAAACAATATTCCT-TTTGCTTCAAACAATCAACCTGGG-ATCTTCTCAAACAA 576
Query 563 TCAATCTTCC-ATTTTTTCCAGTAGTCAGTCTGGTTTCTTTTCAAGCCAACCTGTAGTAT 621
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||| || ||
Sbjct 577 TCAATCTTCCGATTTTT-CCAGTAGTCAGTCTGGTTTCTTTTCAAGCCAATCTGGAGCAT 635
Query 622 TCTCCAGCAGTCCTTCTGGTTTAACATCTAATAGCCAGACTGGATCTTTTAGCAGTGGCC 681
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 636 TCTCCAGCAGTCCTTCTGGTTTGATATCCAATAGCCAGACTGGATCTTTTAGCAGTGGCC 695
Query 682 AGTTTGGTAC-A-AAAA-GCAGCCAACC 706
|||||||||| | |||| ||||||||||
Sbjct 696 AGTTTGGTACGACAAAAAGCAGCCAACC 723
Score = 191 bits (103), Expect = 2e-47
Identities = 137/153 (90%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 699 AGCCAACCTGGAGCATTCTCCAGCAATCCTTCTGGTTTAACATCTAATAGCCAGACTGGA 758
|||||| |||||||||||||||||| |||||||||||| | ||| |||||||||||||||
Sbjct 620 AGCCAATCTGGAGCATTCTCCAGCAGTCCTTCTGGTTTGATATCCAATAGCCAGACTGGA 679
Query 759 TCTTTTAGCAGTGGCCAGTTTTGTTT-A-AAAA-GCAGCCAACCAATTCTATCTTCCGGC 815
||||||||||||||||||||| || | |||| |||||||||||| |||| |||||||
Sbjct 680 TCTTTTAGCAGTGGCCAGTTTGGTACGACAAAAAGCAGCCAACCAAGCCTATTTTCCGGC 739
Query 816 AGTCAAGCAGGAGCAATATCTAATAGCCAACCT 848
|||||||| |||||||| |||||||||||||||
Sbjct 740 AGTCAAGCCGGAGCAATCTCTAATAGCCAACCT 772
Score = 86.1 bits (46), Expect = 8e-16
Identities = 75/87 (86%), Gaps = 9/87 (10%)
Strand=Plus/Plus
Query 1 TGAAGAAAGACACAATAAACCCTAAATA-ACATTTGCCCCTTTTAGCAGCTGCCTCTCTT 59
||||||||||||||| |||||||||||| | |||| | | |||||||||||||||
Sbjct 3 TGAAGAAAGACACAAAAAACCCTAAATATA-ATTT--CAC-----GCAGCTGCCTCTCTT 54
Query 60 TTCTTCTTCCGATTCTCCTTCCGCCGA 86
||||||||||||| |||||||||||||
Sbjct 55 TTCTTCTTCCGATCCTCCTTCCGCCGA 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5