BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490004
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11880.1 | Symbols: AGL14 | AGAMOUS-like 14 | chr4:7143115-7... 1003 0.0
> AT4G11880.1 | Symbols: AGL14 | AGAMOUS-like 14 | chr4:7143115-7147391
FORWARD LENGTH=1013
Length=1013
Score = 1003 bits (543), Expect = 0.0
Identities = 689/756 (91%), Gaps = 23/756 (3%)
Strand=Plus/Plus
Query 23 CTCTCTC-TCTTTCTCTTAGAGGCACAAATCAATCAAAAGCATACAGCAAAACAAA-GGG 80
||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 44 CTCCCTCATCGTTCTCTTAGAGACACAAATCAATCAAAAGCATACATAAAAACAAAGGGG 103
Query 81 GG-TAATCTTTTTCTCCTATAATGGTGAGGGGAAAGACAGAGATGAAGAGGATAGAAAAC 139
|| |||| | | | | |||||||||||||||||||||||||||||||||||| |||
Sbjct 104 GGTTAAT-TAAAT-TAGAAGAATGGTGAGGGGAAAGACAGAGATGAAGAGGATAGAGAAC 161
Query 140 GCGACGAGCAGGCAAGTGACTTTCTCCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTTT 199
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 162 GCAACGAGCAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGACTTTTGAAGAAAGCTTTT 221
Query 200 GAATTATCAGTCCTTTGTGATGCTGAAGTTGCCCTAATCATCTTCTCTCCTAGAGGCAAA 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GAATTATCAGTCCTTTGTGATGCTGAAGTTGCCCTAATCATCTTCTCTCCTAGAGGCAAA 281
Query 260 CTCTATGAATTCTCTAGCTCATCCAGCATAACAAAAACGGTAGAACGATATCAAAAGCGA 319
|||||||| ||||||||||| ||||| ||| | ||||| |||||| ||||||||||||||
Sbjct 282 CTCTATGAGTTCTCTAGCTCCTCCAGTATACCTAAAACAGTAGAAAGATATCAAAAGCGA 341
Query 320 ATACAAGATCTCGGGTCTAACCATAAGAGAGATGATAACTCACAGCAGTCGAAGGATGAA 379
|||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||
Sbjct 342 ATACAAGATCTCGGGTCTAACCATAAGAGAAATGATAATTCACAGCAATCGAAGGACGAA 401
Query 380 ACCTATGCCTTGGCGAGAAAGATCGAACATTTGGAGATTTCGACACGAAAAATGCTGGGA 439
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 402 ACCTATGGCTTGGCGAGAAAGATCGAACATTTGGAGATTTCGACACGAAAAATGATGGGA 461
Query 440 GAAGGACTTGACGCATCTTCTATAGAAGAGTTACAACAATTGGAGAACCAGTTGGACAGA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GAAGGACTTGACGCATCTTCTATAGAAGAGTTACAACAATTGGAGAACCAGTTGGACAGA 521
Query 500 AGCTTAATGAAAATAAGAGCCAAAAAGTATCAATTATTACGCGAAGAAATTGAGAAGTTA 559
||||||||||||||||||||||||||||| || |||||||| ||||||| |||||| |||
Sbjct 522 AGCTTAATGAAAATAAGAGCCAAAAAGTACCAGTTATTACGAGAAGAAACTGAGAAATTA 581
Query 560 AAAGAAAAGGAGAGAAACCTCATTGCACAAAATAAAATGCTGATGGAGAAGTATGAGATG 619
|||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 582 AAAGAAAAGGAGAGGAACCTCATTGCAGAAAATAAAATGCTGATGGAGAAGTGTGAGATG 641
Query 620 CAAGGAAGAGGAATAATAGCAAGAA---CATC--C-TCA---------GAACTGGACATA 664
||||||||||||||||||| ||||| |||| | ||| |||||||| |||
Sbjct 642 CAAGGAAGAGGAATAATAGGAAGAATATCATCATCATCATCAACATCAGAACTGGATATA 701
Query 665 GATAACAATGATGATATGGAAGTGGTGACTGATTTGTTCATTGGACCTCCTGAGACTCGA 724
||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GATGACAATGA--A-ATGGAAGTGGTGACTGATTTGTTCATTGGACCTCCTGAGACTCGA 758
Query 725 CACTCCAAAAAGTTTTCTCCTCCAAACTAACACATA 760
|||| |||||||||| ||||| |||||||||| |||
Sbjct 759 CACTTCAAAAAGTTTCCTCCTTCAAACTAACATATA 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36922098045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5