BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490013
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11950.1 | Symbols: | Protein of unknown function (DUF1191)... 1445 0.0
> AT4G11950.1 | Symbols: | Protein of unknown function (DUF1191)
| chr4:7173276-7174259 REVERSE LENGTH=984
Length=984
Score = 1445 bits (782), Expect = 0.0
Identities = 914/977 (94%), Gaps = 12/977 (1%)
Strand=Plus/Plus
Query 1 ATGGGCTCTATACCATTCATCTTCATCATTCTTCTTTTTCACGTACATAAATCCAAATCT 60
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGCTCTATACCATTTATCTTCATCATCCTTCTTTTTCATGTACATAAATCCAAATCT 60
Query 61 CAGACGATAGAATCAGCACATTTTCTTGATCTTATGATAAGAGATTACACCATCAGAAAC 120
||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 61 CAGACCATTGAATCAGCACATTTTCTTGATCTTATGATCAGAGATTACACCATTAGAAAC 120
Query 121 TTCAACATTCATTTCAAGACAGGAGCGATCCAGAAAGTCCATCTTCCTTCGAATTTCTCC 180
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 TTCAACATACATTTCAAGACAGGTGCTATCCAGAAAGTCCATCTTCCTTCGAATTTCTCC 180
Query 181 TCCATTGATATCGCCACGGCTAAGTTTAGATGTGGGAGTTTGAGAAGACACGGTGCAAGA 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCATTGATATCGCCACAGCTAAGTTTAGATGTGGGAGTTTGAGAAGACACGGTGCAAGA 240
Query 241 ATCGGTGAGTTTCACTTAGGTCCGGGCTTGACGGTGGAGCCATGTGTTGAGAGAGTGATT 300
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 ATTGGAGAGTTTCACTTAGGTCCGGGCTTGACCGTGGAGCCATGTGTTGAGAGAGTGATC 300
Query 301 CTGGTGAGACAGAACTTGGGTTTTAATTGGTCTTCTTATATTTACTCAACCGGTTATAAC 360
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CTGGTGAGACAGAACTTGGGGTTTAACTGGTCTTCTTATATTTACTCAACCGGTTATAAC 360
Query 361 TTAACCGGTTACAATTACCTGCTTGTGTCTCCGGTTCTTGGTTTATTGGCTTACAATTCA 420
|||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TTAACCGGTTACAAATACCGGCTTGTGTCTCCTGTTCTTGGTTTATTGGCTTACAATTCA 420
Query 421 AACCCGGACGGTGTGGCTGTGAATCCTTATGAGATTAACGTAATGGGCACGGAACAAAAC 480
|| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 AATCCGGACGGTGTTGCTGTGAATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAAC 480
Query 481 CCTATTTTGATCAAGTTCTT--G-AGTG-G-----T---AGCCCTAAACCTAATACGAAG 528
|||||||||||||| ||||| | |||| | | |||||||||||||| ||||||
Sbjct 481 CCTATTTTGATCAAATTCTTAAGCAGTGAGGCAAGTGGTAGCCCTAAACCTAACACGAAG 540
Query 529 AAGAACTCATCTCTCTTGTGTGCTTGCTTCACAAGTAATGGTAACATAACGTTTAGAGAG 588
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 AAGAACTCATCTGTCTTGTGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGAGAG 600
Query 589 CAATTTTCAGCCTACGTTTGCTTGGGAACAACAAAAGGGCATTACGCGCTGGTGATTAGA 648
||| ||||||| || |||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 601 CAAGTTTCAGCTTATGTTTGCTTGGGAACAAGACAAGGGCATTACGCGCTTGTGATTAGA 660
Query 649 GCTGATGATAGTAGTGGTGGTGGTAGTACGGTGGTAACGCCGCCGTCATCTCCTGCGGTG 708
||| |||||||| | ||||| ||||||||||||||||| ||| |||||||||| || ||
Sbjct 661 GCTCATGATAGTGGCGGTGGCGGTAGTACGGTGGTAACACCGTCGTCATCTCCGGCTTTG 720
Query 709 AATGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATTGGG 768
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 ACTGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGATAGGT 780
Query 769 TCAATGATTGGAGCGTTTCTGTTAGGGTTATTGGTGGTGGCGATGGTAGTgaaagggaag 828
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCAATAATTGGAGCGTTTCTGTTAGGGTTATTGGTGGTGGCGATGGTAGTGAAAGGGAAG 840
Query 829 aagaaagcgatgagagaggagctggagagaagagcttatgaagaagaagcACTTCAGGTT 888
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 841 AAGAAAGCGATGAGAGAGGAGATGGAGAGGAGAGCTTATGAAGAAGAAGCACTTCAGGTT 900
Query 889 TCAATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCGAGAACAAGAACGGTTCCAAGA 948
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 901 TCAATGGTGGGTCATGTTAGAGCTAATCCTAATGCTTCGAGATCAAGAACGATTCCAAGA 960
Query 949 TTTGACAATACTAGGTA 965
||||| |||||||||||
Sbjct 961 TTTGAAAATACTAGGTA 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5