BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490014
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7174886-7177... 1578 0.0
AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:1200698... 837 0.0
> AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7174886-7177840
REVERSE LENGTH=1439
Length=1439
Score = 1578 bits (854), Expect = 0.0
Identities = 1083/1187 (91%), Gaps = 41/1187 (3%)
Strand=Plus/Plus
Query 4 CATCACCATCTCAATTCTCAACCACACAAATCCAAAGCTTCTAACttttttttttCTTCT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 12 CATCACCATCTCAATTCTCAACCACACAAATCCAAAGCTTCTAACTTTTTTTTTTGTTCT 71
Query 64 TC-TTCC---C---AG---ACAACGATCTCACTCAATCAT---C-------A-AAA-ACG 101
|| | || | || ||||||||||||||||||||| | | ||| |||
Sbjct 72 TCGTCCCGGACAAGAGAAAACAACGATCTCACTCAATCATCGGCGTGAGGGATAAAGACG 131
Query 102 ATGGCCTTTACTCTAACAATCCCCCGGCTTTCTACAATTTCTCGCAAACCCATCACTTGT 161
||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 132 ATGGCTTTTACTCTAACAATCCCTAGATTTTCTGCAATTTCTCGCAAACCCATCACTTGT 191
Query 162 TCTTCTTC---G--A-A--G-ACTGCTCACTTTACTCATGGACGATCGATTTCTCTCAGA 212
|||||||| | | | | |||||| |||||| ||||||||||||||||||||||||
Sbjct 192 TCTTCTTCGAGGACACAGTGTCCTGCTCCCTTTACCCATGGACGATCGATTTCTCTCAGA 251
Query 213 AGAAGACTT-CTCTTATTGCCCCTTCAAGCTTCTACTGATCAATCAGGTCAGGTTGGTGG 271
|||||||| | ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 252 CGAAGACTTAC-CTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGGTCAGGTGGGTGG 310
Query 272 GGAAGAAGTTGATGGCAAGATTTTGCCATATTGTAGCATCAACAAGAGTGAGAAGAGAAC 331
||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 311 GGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCATCAACAAGAATGAGAAGAGAAC 370
Query 332 AATCGGAGAAATGGAACAAGAGTTTCTCCAAGCCATGCAATCGTTCTATTACGAAGGCAA 391
||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 371 TATCGGTGAAATGGAACAAGAGTTCCTCCAAGCGATGCAATCGTTTTATTACGAAGGCAA 430
Query 392 AGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAG 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAG 490
Query 452 CAGTGTTGTTATGCTAAGTTCTGATGAACAAAGATTTCTTGAAGCTTCAATGGCTTATGT 511
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 491 CAGTGTTGTCATGCTAAGTTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGT 550
Query 512 CTCTGGAAACCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAATTGAAACTAAAGAT 571
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 551 CTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGAT 610
Query 572 GGACGGAAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTA 631
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTA 670
Query 632 CAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCTGCAACTGTTGT 691
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 671 TAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCAGCAACTGTTGT 730
Query 692 TGCTCTCGGACTATTTTTCTTCCTTGATGACATTACGGGTTTTGAAATCACGTACCTGCT 751
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 731 TGCTCTCGGACTATTTTTCTTTCTTGATGACATTACTGGTTTTGAAATCACGTACCTGCT 790
Query 752 CGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTTGCTGCGGTGCCTGCAATTGT 811
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 791 CGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTCGCTGCGGTGCCTGCAATTGT 850
Query 812 CTATCTGGCGCTATCACTCACCAAACTCATCCTCAAAGACTTCTTGATCTTGAAGGGCCC 871
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 851 ATATCTGGCGTTATCACTCACCAAACTGATCCTCAAAGACTTCTTGATCTTGAAGGGCCC 910
Query 872 TTGTCCAAACTGTGGAACAGAGAATGTATCCTTCTTTGGAACAATACTTTCCATCTCCAA 931
||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||
Sbjct 911 TTGCCCAAACTGTGGAACAGAGAATGTATCTTTCTTTGGAACGATACTATCCATCCCCAA 970
Query 932 TGATGGTAACACCAACAATGTCAAATGCTCTGGCTGTGGAACGGAGATGATCTATGACTC 991
|||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 971 TGATAGTAACACCAACAATGTCAAATGCTCAGGCTGTGGAACGGAGATGGTCTATGACTC 1030
Query 992 AGGTTCTCGTTTGATCACATTACCAGAAGGAGGCAAAGCTTAAAACCTATGAGCCAAGGC 1051
||||||||||||||||||||||||||||||||| |||||||||| | || |||||||||
Sbjct 1031 AGGTTCTCGTTTGATCACATTACCAGAAGGAGGGAAAGCTTAAATC-TAAGAGCCAAGGG 1089
Query 1052 AAATGTGGAAATGTATGTTAAATGA-TACTAACAGATGAATAAGGTGGAGAAATTAAAGA 1110
|||| ||| ||||||| |||| | |||||||| ||||| |||||||||||||| ||||
Sbjct 1090 TTATGTAGAAGTGTATGTAAAATTAATACTAACAAATGAAGAAGGTGGAGAAATTGAAGA 1149
Query 1111 AAAAGAAGAATATCAAAAGAGTTTGTTTGTGTTCTGTTTTGTATAAT 1157
| ||| |||| | | |||| ||||| || ||||||||||||||
Sbjct 1150 AGAAGGAGAAAAACCAAAG--TTTGTATG----CTGTTTTGTATAAT 1190
> AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12006986-12009520
FORWARD LENGTH=1419
Length=1419
Score = 837 bits (453), Expect = 0.0
Identities = 725/857 (85%), Gaps = 16/857 (2%)
Strand=Plus/Plus
Query 197 ATCGATTTCTCTCAGAAGAAGACTTC-TCTTATTGCC-CCTTCAAGCTTCTACTGATCAA 254
|||||||||| | ||||||||| || |||| ||||| | | |||| | || || |||
Sbjct 309 ATCGATTTCTTTGAGAAGAAGA-GTCTTCTTGTTGCCTGC-TAAAGCCACAACAGAGCAA 366
Query 255 TCAGGT-CAGGTTGGTGGGGAAGAA-GTTGATGGCAA-GATTTTGCCATATTGTAGCATC 311
|||||| || || || || | | || || ||| |||| | ||||||| ||||||||||||
Sbjct 367 TCAGGTCCA-GTAGGAGGAG-ACAACGTCGATAGCAATG-TTTTGCCCTATTGTAGCATC 423
Query 312 AACAAGAG-TGAGAAGAGAACAATCGGAGAAATGGAACAAGAGTTTCTCCAAGCCATGCA 370
|||||| | |||||||| |||||| || |||||||||||||||||||||||||| ||||
Sbjct 424 AACAAG-GCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCA 482
Query 371 ATCGTTCTATTACGAAGGCAAAGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGA 430
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 483 ATCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGA 542
Query 431 AGAGTTGATGTGGGAAGGAAGCAGTGTTGTTATGCTAAGTTCTGATGAACAAAGATTTCT 490
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 543 AGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAGTTCCGATGAACAAAGATT-CT 601
Query 491 TG-AAGCTTCAATGGCTTATGTCTCTGGAAACCCAATCTTGAGTGATGAAGAGTATGATA 549
|| ||||||| ||||||||||| |||||||| |||||||||| ||||||||| |||||||
Sbjct 602 TGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATA 661
Query 550 AGCTCAAATTGAAACTAAAGATGGACGGAAGTGAGATTGTGTGTGAGGGTCCAAGATGCA 609
|||||||| | ||||||||||| || || || || |||||| | ||||||||||||||||
Sbjct 662 AGCTCAAACTCAAACTAAAGATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCA 721
Query 610 GTCTTCGTAGTAAAAAGGTTTACAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGT 669
|||| |||||||||||||| || |||||||| || | ||||| ||||||||||| ||||
Sbjct 722 GTCTCCGTAGTAAAAAGGTGTATAGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGT 781
Query 670 TGAATGTACCTGCAACTGTTGTTGCTCTCGGACTATTTTTCTTCCTTGATGACATTACGG 729
||||||| || ||||| ||||||||||||||||| ||||||||||| || |||||||| |
Sbjct 782 TGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTCTTTTTCTTCCTGGACGACATTACAG 841
Query 730 GTTTTGAAATCACGTACCTGC-TCGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGG 788
||||||| ||||| ||| | | | |||||||| ||||||| ||||||||| ||||| |||
Sbjct 842 GTTTTGAGATCACATACAT-CATGGAGCTTCCAGAACCATACAGTTTCATATTCACTTGG 900
Query 789 TTTGCTGCGGTGCCTGCAATTGTCTATCTGGCGCTATCACTCACCAAACTCATCCTCAAA 848
|| ||||| ||||||| ||||| |||||||| ||||| |||||||| | ||| ||||
Sbjct 901 TTCGCTGCTGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAATTGATCATCAAG 960
Query 849 GACTTCTTGATCTTGAAGGGCCCTTGTCCAAACTGTGGAACAGAGAATGTATCCTTCTTT 908
|||||||||||||||||||| |||||||| || |||||||| || || |||||||||
Sbjct 961 GACTTCTTGATCTTGAAGGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTT 1020
Query 909 GGAACAATACTTTCCATCTCCAATGATGGTAACACCAACAATGTCAAATGCTCTGGCTGT 968
|||||||| || || ||||||| | || || ||||||| |||||||||| | |||
Sbjct 1021 GGAACAATTCTGTCAATCTCCAGCGGCGGCAAAACCAACACTGTCAAATGCACCAACTGC 1080
Query 969 GGAACGGAGATGATCTATGACTCAGGTTCTCGTTTGATCACATTACCAGAAGGAGGCAAA 1028
||||| | |||| | |||||||| |||||| | ||||||||||| ||||||||| || ||
Sbjct 1081 GGAACCGCGATGGTGTATGACTCGGGTTCTAGGTTGATCACATTGCCAGAAGGAAGCCAA 1140
Query 1029 GCTTAAAACCTATGAGC 1045
||||||| ||| |||||
Sbjct 1141 GCTTAAACCCTGTGAGC 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5