BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490016
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11970.1 | Symbols: | YTH family protein | chr4:7180437-718... 1517 0.0
> AT4G11970.1 | Symbols: | YTH family protein | chr4:7180437-7183677
FORWARD LENGTH=1871
Length=1871
Score = 1517 bits (821), Expect = 0.0
Identities = 937/993 (94%), Gaps = 8/993 (1%)
Strand=Plus/Plus
Query 5 TTTAAAGAGGCATGTCTTCTGATACTGCTAAGGAAAATGCATCTGTTGTCGATTCATCTT 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 106 TTTAAAGAGGCATGTCTTCTGATACTGCTAAGGAAAATGCTTCTGTTGTCGATTCGTCTT 165
Query 65 TGACTGATTGGAAACAAGATATAGGAAACTCTGATGATCCAGAGAGTTCAAGTCACAGAA 124
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 166 TGACTGATTGGAAACAAGATTTAGGAAACTCTGATGATCCAGAGAGTACAAGTTACAGAA 225
Query 125 GCAAAGAAGACCATAAACTGTCCAAA-GTGGAAGTTGAACGACGTAACTTTTCTGATCAA 183
|||| |||||||||||||||| |||| ||||| ||||| |||||||||||| ||||||||
Sbjct 226 GCAAGGAAGACCATAAACTGT-CAAAGGTGGATGTTGATCGACGTAACTTTCCTGATCAA 284
Query 184 -TTAGAAAGTTCTAACCCGAATAAGAATAGTAAACCGGGGTA-CCAGACGAGATATTTCA 241
|| |||||| | || ||||||||||||||||||| ||||| | | |||||||||||||
Sbjct 285 CTT-GAAAGTGCAAAGGCGAATAAGAATAGTAAACCAGGGTATCGA-ACGAGATATTTCA 342
Query 242 TCATCAAAAGTCTGAATTATGATAATATACAAGTTTCAGTCGAAAAAGGGATTTGGGCTA 301
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 343 TCATCAAAAGTCTGAATTATGATAATATTCAAGTTTCAGTTGAGAAAGGGATTTGGGCTA 402
Query 302 CTCAAGTTATGAATGAGCCAATATTGGAAGGCGCTTTTCACAAATCTGG-CAGAGTGATT 360
||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 403 CTCAAGTAATGAATGAGCCAATATTGGAAGGCGCTTTTCATAAATCTGGTC-GAGTGATT 461
Query 361 TTAATCTTCAGCGTGAACATGAGCGGATTCTTCCAAGGGTATGCAGAGATGTTGTCTCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTAATCTTCAGCGTGAACATGAGCGGATTCTTCCAAGGGTATGCAGAGATGTTGTCTCCT 521
Query 421 GTGGGATGGAGGAGAGACCATATATGGAGCCAGGGAGGTGGTAAAAACAATTCGTGGGGA 480
||||| |||||| ||||||| |||||||| ||||||||||||||||||||| | ||||||
Sbjct 522 GTGGGTTGGAGGCGAGACCAGATATGGAGTCAGGGAGGTGGTAAAAACAATCCCTGGGGA 581
Query 481 CGTAGTTTTAAAGTAAAATGGTTGCGATTGAGTGAATTGCCTTTTCAGAAAACACTTCAT 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 582 CGTAGTTTTAAAGTAAAATGGTTGCGGTTGAGTGAATTGCCTTTTCAGAAAACACTTCAT 641
Query 541 CTCAAGAATCCTTTGAATGATTACAAGCCTGTCAAGATTAGCCGAGATTGCCAGGAATTA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CTCAAGAATCCTTTGAATGATTACAAGCCTGTCAAGATTAGCCGAGATTGCCAGGAATTA 701
Query 601 CCTGAAGATATCGGTGGAGCACTTTGTGAACTGCTTGATGCAAATAGCTGCGATGACGGG 660
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 702 CCTGAAGATATCGGTGAAGCACTTTGTGAACTCCTTGATGCAAATAGCTGCGATGACGGG 761
Query 661 TTGCTGAATAGCTCCTCTAGGGATGATTATTCTACAAAAAAGTCCCGCGCAGAACCTCCA 720
|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 762 TTGCTGAATAGCTCTTCTAGGGATGATTATTCAACAAAAAGGTCCCGCGCAGAACCTCCA 821
Query 721 TCTTCCTCAGGAGACGAAGAGTACAATAACAATCTTTGGGGCCATACACCGATGCCTTAC 780
||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 822 TCTTCTTCAGGAGACGATGAGTATAATAACAATCTTTGGGGCCATACACCAATGTCTTAC 881
Query 781 CCTCCTGCGGTCTACCCAAACCAGGATGACTTAAGCAGATTTCATCTTGCACAGCAGAGA 840
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 882 CCTCCTACGGTCTACCCAAACCAGGATGACCTCAGCAGATTTCATCTTGCACAGCAGAGA 941
Query 841 GGATATGGAGTTTCCTCGGAATATCTCCATACATCATCAGGTGCATCTAACTCTCGCACG 900
||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 942 GGATATGGAGTTTCCCCCGAATATCTGCATACATCACCAGGTGCATCTAACTCTCGCACG 1001
Query 901 GAGCAAGAAAAGTCTTTACGATTCAACTCATGGTGTTTGCCTTTGGAAAGCCCTCTTGCG 960
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1002 GAGCAAGACAAGTCTTTACGATTCAACTCATGGTGTTTGCCTTTGGAAAGCCCTCTCGCG 1061
Query 961 AATTCCCTAACCGATGATGATTTTCTTGACATG 993
||||| ||||||||||||||||||||||| |||
Sbjct 1062 AATTCTCTAACCGATGATGATTTTCTTGAAATG 1094
Score = 514 bits (278), Expect = 9e-145
Identities = 395/447 (88%), Gaps = 26/447 (6%)
Strand=Plus/Plus
Query 981 TTTTCTTGACATGTCTTATGAAGAATACGTTGAAACCCACAGCAGATGCATGAAACAACT 1040
|||| ||| || |||||||||||| |||||||||||||| ||| ||||||||| || ||
Sbjct 1434 TTTT-TTG-CA-GTCTTATGAAGAGTACGTTGAAACCCATGGCAAATGCATGAAGCAGCT 1490
Query 1041 TGGTCTTCCTGTCAGTGATTCCACAATCACGAGCCATACAAGAGCCATCAAGTAAAACAG 1100
||||||||| | |||||||||||||||||| | ||||||||||||||||||| ||| |
Sbjct 1491 TGGTCTTCC--T--GTGATTCCACAATCACGATCAATACAAGAGCCATCAAGTAGAACTG 1546
Query 1101 ATGATGTAAGCAATGGTTCTTCGAAAGATCAGCCATCATCAAGAAAGAGAGGACGGA-AT 1159
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1547 ATGATGTAAGCAATGGTTCTTCAAAAGATCAGCCATCATCAAGAAAGAGAGGACG-ACAT 1605
Query 1160 TCATCCTAGGGTTCAACTACAAAACTGGCAACTCTA-CCACAAAAATCACATCAAAATGC 1218
|||||||||| ||||||||||| ||| |||||||| || | |||||||||| ||||||
Sbjct 1606 TCATCCTAGGATTCAACTACAAGACTCACAACTCTAGCC-CGAAAATCACATTGAAATGC 1664
Query 1219 ATAAGAATATGTCA-TGCCACTTCGATTGTACGGTGATGGAGAAGTTGTTGTCATGTTGT 1277
| |||||||||| | ||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 1665 ACAAGAATATGT-AGTGCCATTTCGATTGTACGGTGATGGAGAAGTTGTTGTGATATTGT 1723
Query 1278 AACATGTTCATTTGGCC--G-------A-A-A--CCAGAAGACTGTAACTAGAAGTTTCT 1324
|| |||||||||| ||| | | | | ||||||||||||||||| ||||||||
Sbjct 1724 AAGATGTTCATTTTGCCCTGGTGGTTTATAGAAACCAGAAGACTGTAACTAAAAGTTTCT 1783
Query 1325 TCTTTTGATTGCCGAAACTTGTACAGTTTCAACTTCAAATATGGCAACATGTAAACTTTT 1384
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 TCTTTTGATTGCCCAAACTTGTACAGTTTCAACTTCAAATATGGCAACATGTAAACTTTT 1843
Query 1385 GGAAACCTAAACCCTAAATTGGGTTTG 1411
|||||||||||||||||||||||||||
Sbjct 1844 GGAAACCTAAACCCTAAATTGGGTTTG 1870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5