BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490017
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11980.1 | Symbols: ATNUDT14, ATNUDX14, NUDX14 | nudix hydro... 1736 0.0
> AT4G11980.1 | Symbols: ATNUDT14, ATNUDX14, NUDX14 | nudix hydrolase
homolog 14 | chr4:7183650-7185575 REVERSE LENGTH=1149
Length=1149
Score = 1736 bits (940), Expect = 0.0
Identities = 1087/1155 (94%), Gaps = 22/1155 (2%)
Strand=Plus/Plus
Query 1 TTGCTTTCACGTTTTTCATCGATGGCTGGCTTCCGCTTTACTCTTCTTCCCTCGCGGTTA 60
||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 4 TTGCTTTCACGTTTTTCATTGATGGCT-G-----GCTTTACTCTTCTTCCCTCGCGGTTA 57
Query 61 CTCGCGTGTCCTCCACGCGCTTTCCCTCATCGTCTTCAT---CACCATGCAAAGCTGATT 117
||||||| |||| |||||||||| |||| ||| |||||| ||||||||||||||||||
Sbjct 58 CTCGCGTTTCCTTCACGCGCTTTACCTCGTCGCCTTCATCACCACCATGCAAAGCTGATT 117
Query 118 CTTCGCTGCAAAATGTCTTCTTCTTC--CC-CTCTGACTCATTCCATCACTCTCCCGAGC 174
|||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||
Sbjct 118 CTTCGCTGCAAAATGTCTTCTTCTTCTTCCTCTCTTACTCAATCCATCACTCTCCCGAGC 177
Query 175 CAACCCAACGAGCCTGTCCTTATCTCTGCAACCTCTGGAATCTCTGCTTCTGATTTCAGG 234
||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||
Sbjct 178 CAACCCAACGAGCCTGTCCTTGTCTCTGCAACCGCTGGAATCTCTTCTTCCGATTTCAGG 237
Query 235 GATGCGATTGATTCATCTCTGTTTAGAAATTGGCTAAGGAATTTGGAATCAGAGACTGGA 294
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 238 GATGCGATTGATTCATCTCTGTTTAGGAATTGGCTAAGGAATTTGGAATCAGAGAGTGGA 297
Query 295 ATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGGGAGTTGATATGTTT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATTTTAGCTGATGGTTCAATGACATTAAAGCAAGTTCTTATCCAGGGAGTTGATATGTTT 357
Query 355 GGCAAAAGAATTGGTTTTCTCAAATTCAAAGCGGATATTTTCGACAAGGAAACTGGTCAA 414
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGCAAAAGAATTGGATTTCTCAAATTCAAAGCGGATATTTTCGACAAGGAAACTGGTCAA 417
Query 415 AAGGTTCCAGGTATTGTATTTGCACGGGGACCAGCTGTAGCTGTGCTTATTCTCTTGGAG 474
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 AAGGTTCCAGGTATTGTATTTGCACGAGGACCAGCTGTAGCTGTGCTTATTCTCTTGGAG 477
Query 475 TCGGATGGTGAGACTTATGCGGTTCTCACTGAACAGGTTCGAGTTCCTACTGGGAAGATT 534
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 TCAGATGGTGAGACTTATGCGGTTCTCACTGAACAGGTTCGGGTTCCTACTGGGAAGATT 537
Query 535 GTTCTGGAATTACCTGCTGGAATGTTGGATGATGATAAAGGTGACTTTGTTGGTACTGCA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTTCTGGAATTACCTGCTGGAATGTTGGATGATGATAAAGGTGACTTTGTTGGTACTGCA 597
Query 595 GTTCGTGAGGTCGAAGAGGAGATTGGTATAAAACTGAAAAAAGAAGATATGGTTGATCTC 654
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTCGCGAGGTCGAAGAGGAGATTGGTATAAAACTGAAAAAAGAAGATATGGTTGATCTC 657
Query 655 ACGGCTTTCCTTGACCCATCTACAGGTTACCGGATCTTCCCTTCGCCTGGAGGCTGTGAT 714
|| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 658 ACTGCTTTTCTTGACCCATCTACTGGTTACCGGATCTTCCCTTCTCCTGGAGGCTGTGAT 717
Query 715 GAAGAGATGAGCGTGTTTCTTTACAGAGGACAAGTGGAAAAAGAAACAATTAGACAATTG 774
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 718 GAAGAGATGAGCGTGTTTCTTTACAGAGGACAAGTCGAAAAGGAAACAATTAGACAGTTG 777
Query 775 CAAGGCAAAGAGACAGGACTCCGTGAACACGGTGAGTTCATCAAAGTCCGACTCATCCCA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CAAGGCAAAGAGACAGGACTCCGTGAACACGGTGAGTTCATCAAAGTCCGACTCATCCCA 837
Query 835 TACAGAGAGCTCTGGCGCAAAACAGCTGACGCTAAGGTTCTTATGAGCATTGGTCTCTAC 894
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TATAGAGAGCTCTGGCGCAAAACAGCTGACGCTAAGGTTCTTATGAGCATTGGTCTCTAT 897
Query 895 GAAATGGCTCAGAGGGAGGGTCTCGTGTCCAGTCA----CTGAAACCCAGA-TCTTGATC 949
|||||||||||| | |||||||| |||||||| || |||||||||| | ||||||||
Sbjct 898 GAAATGGCTCAGCGAGAGGGTCTTGTGTCCAGCCAGAGACTGAAACCCA-ACTCTTGATC 956
Query 950 TCCTACAATTCTCTGAAAGATATCA-TAACTGGATTCAGTCAACAAGATGAGATAGATTG 1008
|||||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||
Sbjct 957 TCCTACAATTCTCTGAAATATA-CAATAACTGGATTCAGTCAACCAGATGAGATAGATTG 1015
Query 1009 AGATTAGACGTTCTTATGTTGTAAAAGGAGCTTTTAGTTCCTTAAGAT-GCTTTTATAAC 1067
|||||||||||||||||||||||||||||| |||||| | | || ||||| |||||
Sbjct 1016 AGATTAGACGTTCTTATGTTGTAAAAGGAGTTTTTAGATAAATGTTATCGCTTT-ATAAC 1074
Query 1068 TTGGTACCATGAAAACTTGGGAATTTATCTTTAAAACAAAAGATTTTACAAACCCAATTT 1127
|||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1075 TTGGTACCATGACAACTTGGGAACTTATCTTTAGAACAAAAGATTTTGCAAACCCAATTT 1134
Query 1128 AGGGTTTAGGTTTCC 1142
|||||||||||||||
Sbjct 1135 AGGGTTTAGGTTTCC 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5