BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490018
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11990.1 | Symbols: | Cell cycle regulated microtubule asso... 2501 0.0
> AT4G11990.1 | Symbols: | Cell cycle regulated microtubule associated
protein | chr4:7186096-7189875 REVERSE LENGTH=1913
Length=1913
Score = 2501 bits (1354), Expect = 0.0
Identities = 1723/1893 (91%), Gaps = 57/1893 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaCAGAGACGTTTATTTCCTTCTCTGCAAttcttcttcttcttcttctGTTCACT 60
|||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1 AAAAAAACAGTGACGTTTATTTCCTTCTCTGCAATTCTTCTTC-TC--CTTCTGTTCACT 57
Query 61 CATCAAAACCAATGATGATAAAATCACTCATAAATTAGGGTTTCTTGTTGGTGAGTGAGT 120
||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 58 CATCAAATCCAATGATGTTAAAATCACACATAAATTAGGGTTTCTTGTTGGTGAGTGA-C 116
Query 121 GTT---CAGGCGTC-GTTAAAATT-TCTC----TCTGT-TT-C----T---GT---G--- 156
||| | | | | | |||| |||| ||||| || | | || |
Sbjct 117 GTTAAAAACCCACCAG-T-GAATTCTCTCTGTTTCTGTGTTACTGTGTACAGTGGAGATT 174
Query 157 TTAAagagagataatggagatggagacggagacagagacggagtccgatgaagatatgga 216
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 175 TTAAAGAGAGAT-ATGGAGATGGAGACGGACACAGAGACAGAGTCCGATGAAGATATGGA 233
Query 217 gatggagacAATGGTGTTTGAAGTGACTGAAATTGATTTGGAGTATGAGTTTGATGCTTC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GATGGAGACAATGGTGTTTGAAGTGACTGAAATTGATTTGGAGTATGAGTTTGATGCTTC 293
Query 277 TCGTTGGTTTGATTTTACTCGAGAGGAGTTGTCTTTGGAGTCTCGTGCTGCTGAACTTTG 336
||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 294 TCGTTGGTTTGATTTCACTCGAGAGGAGTTGCCGTTGGAGTCTCGTGCTGCTGAACTTTG 353
Query 337 GTTCGAGACCGCTCAGTCTTATCCACCTTCTCCTTTTGCTATGAAACTGTTAATGAAAGA 396
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 354 GTTCGAGACCGCTCAGTCTTATCCACCGTCTCCTTTTGCAATGAAACTGTTAATGATAGA 413
Query 397 GGAGAGTTTTTCTGATGATAAGACTGAGTCTTTGTCAAAATCAGAAGATGGAGAAGTTAT 456
||| |||| | ||||| ||||| |||||||||||||||||||||||||| ||||| |
Sbjct 414 AGAG-GTTTAT--GATGAAAAGACCGAGTCTTTGTCAAAATCAGAAGATGGGGAAGTCAC 470
Query 457 AGTAGATGTTCAGGAGAATGACAGAGAAATTTCTCAGCAACCAGATGTGAATGAAACAGG 516
|||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 471 AGTAGAAGTTCAGGAGAGTGACAGAGAAATCCCTCAGCAACCAGATGTGAATGAAACAGG 530
Query 517 AAATGGAATGAGGTCTGGGGTATTTACATTCATTCAAGGTGGTGGTACTTTAAACAAAGT 576
||||||||||| ||||||||| |||| |||||||||||||||| ||||| | ||||||
Sbjct 531 AAATGGAATGAAGTCTGGGGTGTTTAGATTCATTCAAGGTGGT---ACTTTGAGCAAAGT 587
Query 577 TCCAAATC-AGTCCTTACTTAAAGGACCTACATTTAGCAATCGGATTCATTCTGATAAAC 635
|||||| | | ||||||| ||||||||| ||||||||||||||||||||| |||||| |
Sbjct 588 TCCAAA-CGATTCCTTACATAAAGGACCAACATTTAGCAATCGGATTCATAGTGATAAGC 646
Query 636 TGAAATGCCGACCAAAGTCAAGTATCAGGCCAATACCGAGAAGCTCGACATTGATGAAAC 695
| || | ||||||||||||||| |||||||| ||| |||||||||| |||||||||||||
Sbjct 647 TCAAGTACCGACCAAAGTCAAGCATCAGGCCTATAACGAGAAGCTCAACATTGATGAAAC 706
Query 696 CGACTGCTAGCCTATTAGCAAAACAAGATAATGCCAGA----AT--GCAAGTGGATGAAA 749
| ||||||||| | |||||||||||||||||||||||| || ||||||||||||||
Sbjct 707 CTACTGCTAGCGTTTTAGCAAAACAAGATAATGCCAGACTGCATATGCAAGTGGATGAAA 766
Query 750 TTAAGTGTCCTTCATCTGAAATTCAATCTGCTAAAAGACAGAAGCTCGATGGTGGTCTAC 809
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 767 TTAAGTGTCTTTCATCTGAAATCCAATCTGCTAAAAGACAGAAGCTCGATGGTGGTCTAC 826
Query 810 TTCGTAAGGTTGCTGAAGCAACGCAGGAAACGAATTTGGTCCACAAGACACTCAAGAAGG 869
||||||||||||||||||| | || ||||| ||||||||||| ||| ||||||||||||
Sbjct 827 TTCGTAAGGTTGCTGAAGCGGCTCAAGAAACAAATTTGGTCCATAAGGCACTCAAGAAGG 886
Query 870 ATCTTGATAGAAACTCACTACATGCTAGGATGAAGATTACTGTCCCACAGGAGCCTGATT 929
||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 887 ATCTTGATAAAAACTCACTACATACCAGGATGAAGATTACTATCCCACAGGAGCCTGATT 946
Query 930 TTGCAACATCACATAGAGCAAATAGGATACGGCACAAGGGC-ACTGATAAGTTGGACCAG 988
||||||| |||||||||||||||||||||||||||||| | | || ||||||||| |||
Sbjct 947 TTGCAACTTCACATAGAGCAAATAGGATACGGCACAAGAACGA-TGCTAAGTTGGAGCAG 1005
Query 989 GACTCAACATCAGTGTATAGATTCAAAGCACGCCCCTTGAACCGAAAAATCTTCGACGG- 1047
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1006 GACTCAACATCAGTATATAGATTCAAAGCACGACCCTTGAACCGAAAAATCTTCGA-GGC 1064
Query 1048 TCCATCATTGCCCATTCGGAAAAACAGCACTCCTAAACTACCTGAATTTCAAGAATTTCG 1107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TCCATCATTGCCCATTCGAAAAAACAGCACTCCTAAACTACCTGAATTTCAAGAATTTCG 1124
Query 1108 CTTAAAGACTTCCGAAAGAGCTATGCAACATTCATCAGCAGTATCAACACCGTCTTATCA 1167
|||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1125 TTTAAAGACCTCAGAAAGAGCTATGCAACATTCATCAGCAGTATCAACTTCGTCATATCA 1184
Query 1168 GGGAACTAGTTATCGTAAGGAGTCAGATAAGCCTAATAGGACAGCATTTCTTGACGGTGT 1227
||||| || | ||| ||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 1185 GGGAAATAATAATCATAAGGAGGCAGATAAGCCTAATAGGACA---TTTCCTGACGGTGT 1241
Query 1228 TAACAGGGAACCAAGAAGACCAAGAGCTATGGATATACCTAAGGATGATGATAGAAAACA 1287
|||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |
Sbjct 1242 TAACAGGGAACCAAGAAGACAAAGAGCTATCGATATACCTAAGGATGATGTTAGAAAAGA 1301
Query 1288 CCTCTTCAAAGCTCGGCCTCTTAACAATAAGATACTTTCAAGTGGGCGAGACATTGGCAT 1347
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1302 CCTCTTCAAAGCTCGGCCTCTTAACAAGAAGATACTTTCAAGTGGACGAGAGATTGGCAT 1361
Query 1348 TTTCGGAAAAAGCAAGCGAGAAACTACAGCTCCCTTGGGGTTTAGTTTTCACTCGGAAAG 1407
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GTTCACAAAAAGCAAGCGAGAAACTACAGCTCCCTTGGGGTTTAGTTTTCACTCGGAAAG 1421
Query 1408 GAGGGCTCAACCAGATTTGCCAACAGACCTTTTCAGTAAGCTCTCTTTATCATCCGAACT 1467
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 GACGGCTCAACCAGATTTGCCAACAGACCTTTTCAGTAAGCTCTCTTTATCATCCGAACT 1481
Query 1468 CCGGCCTAACAATGGTTCTCGCTTAAGATTTCCTCAGCCTGAACAAGTAAAGGTCTCAAA 1527
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1482 CCGGCCAAACAATGGTTCTCGCTTAAGATTTCCTCAGCCTGAACAAGTAAAGGGCTCAAA 1541
Query 1528 GGAAAATAGACTGAACTCCTTTCAAGCAGGGAATGAAAGAACAAGCAAGTTTACCGGAAA 1587
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1542 GGAAAATAGATTGAACTCCTTTCAAGCAGGGAATGAAAGAACAAGCAAGTTTATGGGAAA 1601
Query 1588 ACCGATGGTACAACACGGTGTAGTTCCTGAAACTAGCCGGCAATGGACTTCTAGGAGTGG 1647
|| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1602 CCCAATGGTACAACCCAGTGTAGTTCCTGAAACTAGCCGGCAATGGACTTCTCGGAGTGG 1661
Query 1648 TAAGCTCGAAGCAACGGTGCAACTAAATTAACAGGAGCGTAGGTATTCTCGCTGATCGTA 1707
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 1662 TAAGCTCGAAGCAACGGTGCAACTAAATTAACAGGAGCTTAGGTGTTCTAGCTGATCGTA 1721
Query 1708 GAAAAGAAAATCCTTAGTTATATGAATCATCTCCATTATTTGTACATTAAGACTTGGTTC 1767
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1722 GAAAAGAAAATCCGTAGTTATATGAGTCATCTCCATT-TTTGTACATTAAGACTTGGTTC 1780
Query 1768 TCTTAGGTGACAACTATTCAAAAAGAAGGCTAACATTTTGAAGAACTAAAA-T--CT-GT 1823
||||||||||||||||||||||||||||| ||||||| ||||||||||||| | || ||
Sbjct 1781 TCTTAGGTGACAACTATTCAAAAAGAAGGTTAACATTATGAAGAACTAAAAATATCTAGT 1840
Query 1824 CTCTCAAGGGGTGTGGTGTGACATTGTGGTCGA 1856
||||||||| |||||||||||||||||||||||
Sbjct 1841 CTCTCAAGGAGTGTGGTGTGACATTGTGGTCGA 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5