BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490019
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12000.1 | Symbols: | SNARE associated Golgi protein family... 1502 0.0
AT4G22850.1 | Symbols: | SNARE associated Golgi protein family... 514 8e-145
> AT4G12000.1 | Symbols: | SNARE associated Golgi protein family
| chr4:7193270-7195152 REVERSE LENGTH=1388
Length=1388
Score = 1502 bits (813), Expect = 0.0
Identities = 1020/1115 (91%), Gaps = 34/1115 (3%)
Strand=Plus/Plus
Query 73 CTCGATGACTTATCACGAGGAAGACGATACAGTTTCTGAATTTCGAGTTAGAGTTGAAGA 132
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 207 CTCGATGACTTATCACGAAGAAGACGATACAGTTTCTGAATTTCGAGTTAGAGTTGAAGA 266
Query 133 AGATGGAGTTGAGAAATTAGGGCATTATGTTAAACTTACTGAGGAAGAT-G-A-TCCATC 189
|||||||||||| |||||||| |||||||||||||||||||| | | | | | | ||||
Sbjct 267 AGATGGAGTTGATAAATTAGGTCATTATGTTAAACTTACTGAAG-ATTTCGAAGTACATC 325
Query 190 -AC-CGtcttcttcttc-ttcttcttcttcttcttcttcttcttcttcttcATGTGGACA 246
|| | | | ||||| || || | |||||||||||||||||||||||
Sbjct 326 GACAAG-AAAC-AGAACAAGAATCTTCATCATCACCGTCTTCTTCTTCTTCATGTGGACA 383
Query 247 GAAACGATCTGTTTGGTTTTGGATCAAGCTTGGTCTTTTCTTAACATTTCTAACTGCTTT 306
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 384 GAAACGATCTGTTTGGTTTTGGATCAAGCTTGGTCTTTTCTTCACTTTTCTAACTGCTTT 443
Query 307 GGGTCTCGCTGGTTACAAATGGCT-CGCTCCTTTAATCATGGATAAGGAGCTAATCCCTC 365
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 444 GGGTCTCGCTGGTTACAAATGGCTATAC-CCTTTAATCATGGATAAGGAGCTAATCCCAC 502
Query 366 TCATTAAATGGGAGATGGAGACATTTACACACCCGGTGTGCGGTATTCTTGTGTTTGCAT 425
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 503 TCATAAAATGGGAGATGGAGACATTTACACACCCTGTGTGCGGTATTCTTGTGTTTGCAT 562
Query 426 CAGTGTCATTATTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGA 485
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CAGTCTCTTTATTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGA 622
Query 486 TTACATTTGGTTATTTCTATGGCCTTCTCCTTACTCTTCCAGCTGTAGCTATTGGTGTTT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TTACATTTGGTTATTTCTATGGCCTTCTCCTTACTCTTCCAGCTGTAGCTATTGGTGTTT 682
Query 546 CACTTCCTTACTTCATCAGCTATCTCTTCCTCAACAAAATTCAAGGTTGGTTAGAAAGAT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CACTTCCTTACTTCATCAGCTATCTCTTCCTCAACAAAATTCAAGGTTGGTTAGAAAGAT 742
Query 606 ATCCAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCACCAGTTTC 665
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 743 ATCCAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCATCAGTTTC 802
Query 666 GTGCAGTAACCTTAATCCGGATTTCTCCATTCCCTTTTCCTCTTTATAACTACTGCGCTG 725
||||||| ||||||||||||||||||||||| |||||| || | ||||| ||||||||||
Sbjct 803 GTGCAGTTACCTTAATCCGGATTTCTCCATTTCCTTTTGCTGTATATAATTACTGCGCTG 862
Query 726 TTGCAACTCGTGTAAAGTTCGGTCCTTACATGGCTGGCTCTCTCGTAGGCATGGCGCCAG 785
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 863 TTGCAACTCGTGTGAAGTTCGGTCCTTACATGGCTGGTTCTCTCGTAGGCATGGCGCCGG 922
Query 786 AGATTTTCT-TCGCAATTTATACAGGGATTCTTATAAGGGCATTGGTAGATGCATCCACT 844
||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 923 AGATTTT-TGTCGCAATTTATACAGGGATTCTTATAAGGACATTGGCAGATGCATCCACT 981
Query 845 GCGGAACAAGAGGGTCTCTCGATTCTTCAGATTGTTCTCAACATTCTTGGTTTTGTAGCA 904
||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 982 GCGGAACAAAAGGGTCTCTCGATTCTTCAAATTGTTCTCAACATTTTTGGTTTTGTAGCA 1041
Query 905 ACTGTTGTGACAACTGTTCTGATCACTAAGTATGCGAAAAGACAGCTTGAAGTTATGAAG 964
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ACTGTTGTGACAACTGTTCTCATCACTAAGTATGCGAAAAGACAGCTTGAAGTTATGAAG 1101
Query 965 AAGGAGAAGGAAGCTTTGTTGTTACAGTAATGGAGACAACAACCTCGGAAGTTTTGTCTC 1024
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1102 AAGGAGAAGGAAGCTTTGTTGTTACAGTAATGGAGACAACAACCTCAGAAGTTATGTCTC 1161
Query 1025 TGCTTATTACCAAAGTACAGGTTTT-GTCCATGATGTGAAAAAACT-T-G-TTTT-GGT- 1078
|||||||| |||||||||||||||| ||||||||||||||| |||| | | |||| |||
Sbjct 1162 TGCTTATTCCCAAAGTACAGGTTTTCGTCCATGATGTGAAAGAACTCTTGATTTTTGGTC 1221
Query 1079 T-TGTCAT--TACA---A-A-C-GAGAAATGAAAGGGTAGAAAAGAAAAATTATAATGAC 1129
| ||| | | | | | |||||||||||||||| |||||||| ||||||||||
Sbjct 1222 TCTGTTTTGGTTTGTTTATAGCCGAGAAATGAAAGGGTATAAAAGAAA--TTATAATGAC 1279
Query 1130 TA-A-AAACAC-A-CAAAATTCTCTAACACGAttt 1160
|| | |||||| | | ||| |||||||||||||||
Sbjct 1280 TATATAAACACTAACTAAACTCTCTAACACGATTT 1314
> AT4G22850.1 | Symbols: | SNARE associated Golgi protein family
| chr4:11994014-11996229 FORWARD LENGTH=1359
Length=1359
Score = 514 bits (278), Expect = 8e-145
Identities = 598/748 (80%), Gaps = 40/748 (5%)
Strand=Plus/Plus
Query 258 TTTGGTTTTGGATCAAGCTTGGTCTTTTCTTAACATTTCTAACTGCTTTGGGTCTCGCT- 316
||||||||||| |||||||| |||||| || | ||||| |||| |||| | | | |
Sbjct 338 TTTGGTTTTGGGTCAAGCTTTCTCTTTTATTCGCCTTTCTTGCTGCATTGGCTGTTG-TG 396
Query 317 GGTTACAAATGGCTCGCTCCTTTAATCATGGATAAGGAGCTAATCCCTCTCATTA-AATG 375
||||||| ||| ||| ||| || ||||||||||||||||| || || || | || ||||
Sbjct 397 GGTTACATTTGGATCGGTCCATTGATCATGGATAAGGAGCTTATACCGCTTA-TACAATG 455
Query 376 GGAGAT-GGAGACATTTACACACCCGGTGTGCGGTATTCTTGTGTTTGCATCAGTGTC-A 433
|||||| || || |||||||| || ||||| ||| ||||||| |||||||||||| | |
Sbjct 456 GGAGATACGA-ACTTTTACACATCCTGTGTGTGGTCTTCTTGTTTTTGCATCAGTGGCGA 514
Query 434 TTA-TTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGATTACATT 492
|| |||| | |||||| ||||| |||| || ||||||||| | |||||||| || ||
Sbjct 515 -TATTTCCAACT-ATACTTCTTCCATCTACACCATCAATGTGGATTGCTGGGATGACTTT 572
Query 493 TGGTTATTTCTATGGCCTTCTCCTTACTCT-TC-CAGCTGTAGCTATTGGTGTTTCACTT 550
||||||| ||||||| |||| |||| | | || |||||| |||| |||||||||| ||
Sbjct 573 TGGTTATGGCTATGGCTTTCTACTTA-T-TATCTCAGCTGCAGCTGTTGGTGTTTCGCTA 630
Query 551 CCTTACTTCATCAG-CTATCTCTTCCT-CAACAAAATTCAAGGTTGGTTAGAAAGATATC 608
|||||||| || | | | ||||| || | ||||||||||||| ||| ||||||||||||
Sbjct 631 CCTTACTTTATTGGAC-AACTCTT-CTGCCACAAAATTCAAGGATGGCTAGAAAGATATC 688
Query 609 CAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCACCAGTTTCGT- 667
| |||||||| || | || ||||||||||||| ||| | |||| ||||||| |||| |
Sbjct 689 CTGATCAAGCAGCCGTATTAAGAGCTGCTGGTGAAGGGAATTGGCTTCACCAATTTC-TA 747
Query 668 GCAGTAACCTTAATCCGGATTTCTCCATTCCCTTTTCCT-CTTTATAACTACTGCGCTGT 726
|||||||||||||||||||||||||||||||| | | |||||||||||||| ||||
Sbjct 748 TTAGTAACCTTAATCCGGATTTCTCCATTCCCTTA-CATTCTTTATAACTACTGTTCTGT 806
Query 727 TGCAACTCGTGTAAAGT-TCGGTCCTTACATGGCTGGCTCTCTCGTAGGCATGGCGCCAG 785
||||||||||| |||| | ||||||||||| | ||||||||| ||||||||| ||| |
Sbjct 807 AGCAACTCGTGTTAAGTAT-GGTCCTTACATCACGGGCTCTCTCTTAGGCATGGTGCCTG 865
Query 786 AGATTTTCT-TCGCAATTTATACAGGGATTCTTATAAGGGCATTGGTAGATGCATCCACT 844
|| |||| | ||||||| || |||||||| ||| ||||| |||| | ||| ||||| ||
Sbjct 866 AGGTTTT-TGTCGCAATCTACACAGGGATACTTGTAAGGACATTAGCAGAAGCATCTTCT 924
Query 845 GCGGAACAAGAGGGTCTCTCGATT-CTTCAGATTG-TTCTCAACATTCTTGG-TTTTGTA 901
|| ||| || ||||||||||| | | ||| | | ||||||||||||| || |||| ||
Sbjct 925 GCAGAAGAACAGGGTCTCTCGGTAACA-CAGGT-GATTCTCAACATTCTCGGCTTTT-TA 981
Query 902 GCAACTGTTG-TGACAACTG-TTCTGATCACTAAGTATGCGAAAAGACAGCTTGA-A-GT 957
||||| || | | ||||| | |||| ||||| |||||||||||||||||||| || | |
Sbjct 982 GCAACAGTGGCT-ACAAC-GATTCTCATCACAAAGTATGCGAAAAGACAGCTGGAGACG- 1038
Query 958 TATGAAGAAGGAGAAGGAAGCTTTGTTG 985
|||||||| ||| | ||||| ||||||
Sbjct 1039 -ATGAAGAAAGAGGACGAAGCATTGTTG 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5