BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490020
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12030.2 | Symbols: BAT5, BASS5 | bile acid transporter 5 | ... 2084 0.0
> AT4G12030.2 | Symbols: BAT5, BASS5 | bile acid transporter 5
| chr4:7210918-7212992 FORWARD LENGTH=1566
Length=1566
Score = 2084 bits (1128), Expect = 0.0
Identities = 1347/1452 (93%), Gaps = 17/1452 (1%)
Strand=Plus/Plus
Query 1 TCTCTTTCTCTCTTTAGTCTCAAGCAAGAAAAATGGGTGTGATCTCTCCGATTGAGACTC 60
|||||||||||||| || |||||| |||||||||||||||||| ||||||| ||| ||||
Sbjct 32 TCTCTTTCTCTCTTAAGCCTCAAGAAAGAAAAATGGGTGTGATATCTCCGACTGAAACTC 91
Query 61 TGTTCTTAAAGTCTCAACATCGTCTTCTTCAACCTCGAAACTACTCCTACCCACTTGTTT 120
||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| ||
Sbjct 92 TGTTCTTAAAGTCTCAACATCGTCTTCTTCAACCTCGAAACTATTCATACGCACTTGCTT 151
Query 121 TTCACAACACTCGACGAGTTGCGACTTTCCCATGCAACAGCTTCTCATTCTCTTCTCTAG 180
|||||| ||||||||||||||||| ||||||| || | | |||||||||||||||||
Sbjct 152 TTCACAGCACTCGACGAGTTGCGAATTTCCCACGC-A-A----CTCATTCTCTTCTCTAG 205
Query 181 GATCATGCTCTGTAGATTTTCCACTACGAAGTAACCTGATTTCGCAAAATGGAAAGTCAA 240
||||||| |||||||||||||||||||||||||||| |||||| |||||| | |||||||
Sbjct 206 GATCATGTTCTGTAGATTTTCCACTACGAAGTAACCCGATTTCACAAAATAGCAAGTCAA 265
Query 241 GTT-ATCCTTGGCGGAGATATGTATCCGAATCTGACTCAAACGAGATGTACCATAAGAAG 299
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 266 -TTCATCCTTGGCGGAGATATGTATCCGAATCTGACTCAAACGAGCTGTATCATAAGAAG 324
Query 300 GTTTCTTCTATAATGGAAACATTAAAGCAAGCCAACTCTTTTATTCCTCATGCAATTCTC 359
||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 325 GTTTCTTCTATTATGGAAACATTAAAGCAAGCCTACTCTTTTATTCCTCATGGAATTCTG 384
Query 360 TTAAGTACAATCTTAGCTCTTCTCTATCCACCTTCTTTTACATGGTTCAAGCCAAGGTAC 419
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 385 TTAAGTACAATATTAGCTCTTGTCTATCCACCTTCTTTCACATGGTTCAAGCCAAGGTAC 444
Query 420 TTTGTGCCTGGTTTAGGTTTCATGATGTTTGCAGTTGGAATCAACTCGAACGAAAAAGAC 479
||||| ||||| ||||| |||||||||||||| ||||| |||||||| || |||| |||
Sbjct 445 TTTGTACCTGGCTTAGGGTTCATGATGTTTGCTGTTGGTATCAACTCTAATGAAAGAGAT 504
Query 480 TTTCTCGAAGCTCTTAAAAGACCAGATGCTATTTTTGCCGGTTACATCGGACAATACTTG 539
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TTTCTTGAAGCACTTAAAAGACCAGATGCTATTTTTGCCGGTTACATCGGACAATACTTG 564
Query 540 ATAAAACCTCTCTTAGGTTACATTTTCGGCGTAATTGCTGTCTCTCTTTTCAATCTACCT 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 ATTAAACCTCTCTTAGGTTACATTTTCGGCGTAATTGCTGTCTCTCTTTTCAATCTACCT 624
Query 600 ACTTCTATAGGTGCTGGAATTATGTTGGTCTCATGTGTTAGTGGAGCTCAGCTATCAAAT 659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 625 ACTTCTATAGGTGCTGGAATCATGTTGGTCTCATGTGTTAGTGGAGCTCAGCTATCAAAT 684
Query 660 TACACAACTTTCTTGACCGATCCTTCACTCGCGCCGCTTAGCATCGTCATGACATCTGTC 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 685 TACACAACTTTCTTGACCGATCCTTCACTCGCGGCGCTTAGCATCGTCATGACATCTATC 744
Query 720 TCAACCGCTACTGCGGTCCTCGTTACACCCATGCTTTCACTTTTACTCATCGGTAAAAAG 779
||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 745 TCAACGGCCACTGCGGTCCTCGTTACACCTATGCTTTCACTCTTACTCATTGGTAAAAAG 804
Query 780 CTTCCCGTTGATGTGATTGGGATGATCTCTAGCATTCTCCAAGTCGT-AGTTACACCTAT 838
||||||||||||||| |||||||||||||||||||||| ||||| || | ||||||||||
Sbjct 805 CTTCCCGTTGATGTGTTTGGGATGATCTCTAGCATTCTTCAAGTGGTGA-TTACACCTAT 863
Query 839 TGCCGCAGGACTACTTCTTAACCGGTTATTTCCAAGGTTGTCTAATGCAATCAAACCATT 898
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 864 TGCCGCAGGACTACTTCTGAACCGGTTGTTTCCAAGGTTGTCTAATGCAATCAAACCATT 923
Query 899 TCTCCCGGCGTTAACAGTTATCGATACG-GCTTGTTGCATAGGAGCACCCCTTGCTTTGA 957
||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 924 TCTTCCGGCGTTAACAGTTATCGATATGAG-TTGTTGCATAGGAGCACCCCTTGCTTTGA 982
Query 958 ACATAGATTCAATCTTGTCTCCGTTTGGTGCAACCATCTTGTTCATCGTCATAACGTTTC 1017
| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 983 ATATAGATTCAATCTTGTCTCCGTTTGGTGCAACCATTTTGTTCCTCGTCATCACGTTTC 1042
Query 1018 ATCTCTTGGCTTTCGTCGCTGGTTACTTTTTCACTGGTTTCTTCTTCAGCAAGGCACCTG 1077
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 ATCTCTTGGCTTTTGTTGCTGGTTACTTTTTCACTGGTTTCTTCTTCAGCAAGGCACCTG 1102
Query 1078 ATGTAAAAGCTCTACAAAGAACAATTTCTTATGAGACCGGAATGCAAAGTAGTCTTCTCG 1137
||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1103 ATGTAAAAGCTCTGCAAAGAACAATTTCCTATGAAACAGGAATGCAAAGTAGTCTTCTCG 1162
Query 1138 CTCTGGCCCTAGCGACAAAGTTCTTTCAAGATCCTCTCGTTGGAGTGCCTCCAGCAATCT 1197
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CTCTGGCCCTCGCTACAAAGTTCTTTCAAGATCCTCTCGTTGGAGTGCCTCCAGCAATCT 1222
Query 1198 CCACAGTAGTTATGTCTCTAATGGGCGTCTCGCTTGTTACCATATGGAAAAACAGAAAGG 1257
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 CCACGGTTGTTATGTCTCTAATGGGCGTCTCGCTTGTTACCATATGGAAAAACAGAAAGG 1282
Query 1258 AGTAGTGCCATGAACCCTAATTAGGGATTTTGCAGAATTT-CTGTTGTTTATGGTCGGCT 1316
||||||| |||||| |||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 1283 AGTAGTGACATGAAACCTAATCAGGGATTTTGCGGAATTTGCTGTTGTTTATGGTCGGCT 1342
Query 1317 GTTCTAATTGTTTTTGTAATGGTCAGTTTATGGTTTCTTATAAAAGAACCAAGAGTTTAC 1376
|||| ||||||||| |||||| || | ||||| |||| |||||||||||||||| |||||
Sbjct 1343 GTTCCAATTGTTTTCGTAATGATCTGGTTATGTTTTCATATAAAAGAACCAAGAATTTAC 1402
Query 1377 CCATAAAAAGTTTAAAACGATTTCAATTTT-G-TTCTTGATCGGTTGTTATATTAAACCA 1434
||||||||||||||||| | |||| ||||| | |||||||| |||| | | | ||||||
Sbjct 1403 CCATAAAAAGTTTAAAATG-TTTCCATTTTTGGTTCTTGATTGGTTCTGAGAC-AAACCA 1460
Query 1435 AAACAGAGCCAA 1446
|||||||| |||
Sbjct 1461 AAACAGAGTCAA 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5