BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490023
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12040.1 | Symbols: | A20/AN1-like zinc finger family prote... 852 0.0
> AT4G12040.1 | Symbols: | A20/AN1-like zinc finger family protein
| chr4:7214703-7215989 FORWARD LENGTH=894
Length=894
Score = 852 bits (461), Expect = 0.0
Identities = 595/655 (91%), Gaps = 28/655 (4%)
Strand=Plus/Plus
Query 574 TACAACGAAAATGGGCTCAGAGCAGAACAACAGCACAAGCTTTCCACCAACAGAGCCAAA 633
||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 236 TACAAAAAAAATGGGCTCAGAGGAAAACAACAGCACAAGCTTTCCACCAACAGAGCCAAA 295
Query 634 GCTCTGTGATAACGGATGCGGATTCTTCGGGTCACCATCCAACATGAATCTGTGTTCGAA 693
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 296 GCTCTGTGATAACGGATGTGGATTCTTCGGGTCACCATCCAACATGAATCTCTGCTCGAA 355
Query 694 ATGTTACAGAAGCTTACGAGCTGAGGAAGATCAAACCGCGGTAGCGAAAGCTGCGGTAAA 753
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 356 ATGTTACAGAAGCTTAAGAGCCGAGGAAGATCAAACCGCGGTAGCGAAAGCTGCGGTGAA 415
Query 754 GAAGTCTTTAAAGCTTCCATCTTGCAGTATCATTGCACCGGGACAAAAACATCCTCTGGA 813
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 416 GAACTCTTTAAAGCTTCCATCTTGCAGTATCATTGCACCTGGACAAAAACATCCTCTGGA 475
Query 814 AATTAAACCAGCGCATTTGGAAACCGTTGTTGTAACCGCTGAGCCGTCTTCGGTACCTGT 873
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 AATTAAACCAGCTCATTTGGAAACCGTTGTTGTAACCGCTGAGCCGTCTTCTGTACCTGT 535
Query 874 AGCTACGGAACAGGACGAGGCTGAGCCATTGAGACCTG-T--A-CGACCTAACAGGTGTT 929
||| |||||||||||||||||||||| | |||||||| | | ||| | ||||||||||
Sbjct 536 AGCCGCGGAACAGGACGAGGCTGAGCCGTCGAGACCTGTTAGACCGAAC-AACAGGTGTT 594
Query 930 TCAGCTGTAACAAGAAGGTTGGGGTAATGGGTTTTAAGTGCAAATGCGGTAGCACGTTTT 989
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 595 TCAGCTGTAACAAGAAGGTTGGTGTAATGGGGTTTAAGTGCAAATGCGGTAGCACGTTTT 654
Query 990 GCGGGAATCATCGGTACCCGGAGAAGCATGAGTGTAGCTTCGATTTCAAAGAAGTTGGAC 1049
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GCGGGAGTCATAGGTACCCGGAGAAGCATGAGTGTAGCTTCGATTTCAAAGAAGTTGGAC 714
Query 1050 GTGATGCAATCGCAAAGGCGAATCCTTTGGTTAAGGCGGATAAAGTCCAGAGGATTTGaa 1109
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 715 GTGATGCAATTGCAAAGGCTAATCCTTTGGTTAAGGCGGATAAAGTTCAGAGGATTTGAA 774
Query 1110 -aaaa-a---TTTCTT-T------GT-----C-TT--CT---GCATTTGATCAGTTTCTT 1146
|||| | ||| || | || | || || |||||||||||||||||
Sbjct 775 GAAAACAAACTTTGTTATTTTTAAGTATTTTCGTTGTCTTCTGCATTTGATCAGTTTCTG 834
Query 1147 CCGGGGATGTTCGATGTTTGGTTTCCATGAATCAAAATAAAAATTCCTGCTCTTG 1201
|| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 835 CCTGGGATGTTCGATGTTTGGTTTCCATGAATCAAAATGAAAATTGCTGTTCTTG 889
Score = 169 bits (91), Expect = 7e-41
Identities = 107/114 (94%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 1 ATTGTTGCGTGTTTGGTTATCTCTTCTTTTTCTTCTCTCTTACCTAAATCAAGGGATTTG 60
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 8 ATTGTTGCGTGTTTGGTTATCTCTTCTTT--CTTCTCTCTCACCTAAATCAAGGGATTTG 65
Query 61 TTCTGATCAAACTTTTGAACAGAATTAACAACAAATCCCTAGAAGAATCTGACC 114
|||||||||| |||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 66 TTCTGATCAA-CTTT-GAACAGAATTTACAACAAATCCCTAGAAAAATCTGACC 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5