BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490024
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12050.1 | Symbols: | Predicted AT-hook DNA-binding family ... 2183 0.0
AT4G22810.1 | Symbols: | Predicted AT-hook DNA-binding family ... 553 2e-156
> AT4G12050.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr4:7219824-7221328 REVERSE LENGTH=1505
Length=1505
Score = 2183 bits (1182), Expect = 0.0
Identities = 1409/1512 (93%), Gaps = 42/1512 (3%)
Strand=Plus/Plus
Query 1 ACAAGAGTAGAGAGAGaaaa-aaaCCCCTTACCAAATCAATCAAAGAATAAGATGAAGAA 59
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 3 ACAAGAGTAGAGAGAGAAAATAAA-ACCTTACCAAATCAATCAAAGAATAAGATGAAGAA 61
Query 60 GAAATTTCCAGCTTGATAT-TTGTTGTGAAAACATTTTTATTCTTTTCCTCTTCTATCTA 118
||| |||||||||||| | || ||||||||||||| |||||||||||||||||||||||
Sbjct 62 CAAAATTCCAGCTTGATGTATT-TTGTGAAAACATTATTATTCTTTTCCTCTTCTATCTA 120
Query 119 GAGTCTCTCCTAGGTCAAATCATCAAAATCAATTCTCATCTCAACAAAGAATGGATCCAG 178
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 121 GAGTCTCTCCTAGGTCAAATTATCAAAATCAATTCTCATCTCAACATAGAATGGATCCAG 180
Query 179 TTCAATCTCATGGATCACAAAGCTCTCTTCCTCCTCCTTTCCACGCTAGAGACTTCCAAT 238
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 181 TTCAATCTCATGGATCACAAAGCTCTCTTCCTCCTCCTTTCCATGCTAGAGATTTCCAAT 240
Query 239 TACATCTTcaacaacaacaac-a-a-caacaacaacat------caacaacaacaGCAGT 289
||||||||||||||||||||| | | |||||||||||| ||||||||||| ||||
Sbjct 241 TACATCTTCAACAACAACAACAACATCAACAACAACATCAACAACAACAACAACAACAGT 300
Query 290 TCTTTCTCCACCATCATCAGCAGCCGCAGAGAAACCCTGATCAAGATCATGAGCAGCAAG 349
|||||||||||||||||||||| || || ||||||| |||||||||||| ||||||||||
Sbjct 301 TCTTTCTCCACCATCATCAGCAACCACAAAGAAACCTTGATCAAGATCACGAGCAGCAAG 360
Query 350 GAGGGTCAATAATGAATCGATCCATCAAGATGGATCGTGAAGAGACAAGCGATAACATGG 409
||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 361 GAGGGTCAATATTGAATAGATCTATCAAGATGGATCGCGAAGAGACAAGCGATAACATGG 420
Query 410 ACAACATCGCTAACAACAACAGCGGTAGCGAAGGTAAAGAGATGAGTTTACAC---GG-G 465
||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |
Sbjct 421 ACAACATCGCTAATACCAACAGCGGTAGCGAAGGTAAAGAGATGAGTTTACACGGAGGAG 480
Query 466 --GGA-GAA--------GGAGGAAGCGGAGAACAGATGACAAGAAGGCCAAGAGGAAGAC 514
||| ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 AAGGAGGAAGCGGTGGTGGAGGAAGTGGAGAACAGATGACAAGAAGGCCAAGAGGAAGAC 540
Query 515 CAGCAGGATCCAAGAACAAACCTAAAGCTCCAATAATCATTACAAGAGACAGCGCAAACG 574
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 CAGCAGGATCCAAGAACAAACCTAAAGCTCCAATAATCATAACAAGAGACAGCGCAAACG 600
Query 575 CGCTTCGAACTCACGTCATGGAGATCGGAGATGGATGTGACATAGTTGACTGTATGGCTA 634
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 601 CGCTTCGAACTCACGTCATGGAGATAGGAGACGGATGTGACATAGTTGACTGTATGGCTA 660
Query 635 CGTTCGCTAGACGCCGCCAAAGAGGCGTTTGCGTTATGAGCGGTACAGGAAACGTTACTA 694
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 CGTTCGCTAGACGCCGCCAAAGAGGCGTTTGCGTTATGAGCGGTACAGGAAGCGTTACTA 720
Query 695 ACGTCACGATACGTCAGCCTGGATCGCCACCTGGCTCAGTGGTTAGCCTTCACGGCCGGT 754
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 ACGTCACTATACGTCAGCCTGGATCGCCACCTGGCTCGGTGGTTAGCCTTCACGGCCGGT 780
Query 755 TTGAAATCCTCTCTCTTTCCGGATCTTTCTTGCCACCGCCTGCGCCTCCTGCAGCCACTG 814
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 781 TTGAAATCCTCTCTCTTTCGGGATCTTTCTTGCCTCCGCCTGCGCCGCCTGCAGCCACCG 840
Query 815 GACTAAGCGTTTACCTAGCTGGAGGACAAGGGCAGGTCGTTGGAGGTAGTGTGGTGGGAC 874
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GACTAAGCGTTTACCTAGCCGGAGGACAAGGGCAGGTCGTTGGAGGTAGTGTGGTGGGAC 900
Query 875 CTTTGTTGTGTTCGGGTCCTGTAGTGGTTATGGCGGCGTCTTTTAGCAATGCGGCTTACG 934
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 901 CTTTGTTGTGTTCGGGTCCTGTGGTGGTTATGGCGGCTTCTTTTAGCAATGCGGCGTACG 960
Query 935 AGAGGCTACCTTTGGAAGAAGATGAGATGCAGACGCCAGTTCACGGAGGCGGTGGAGGAG 994
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 961 AAAGGCTGCCTTTGGAAGAAGATGAGATGCAGACGCCAGTTCAAGGAGGCGGTGGAGGAG 1020
Query 995 GTGGAGAAGGAGGTGGAATGGGATCTCCGCCGATGATGGGGCAGCAACAAGCTATGGCAG 1054
| |||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1021 GAGGAGGTGGTGGTGGAATGGGATCTCCCCCGATGATGGGACAGCAACAAGCTATGGCAG 1080
Query 1055 CTATGGCGGCGGCTCAAGGACTACCACCGAATCTTCTTGGTTCGGTTCAGTTGCCGCCGC 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1081 CTATGGCGGCGGCTCAAGGACTACCACCGAATCTTCTTGGTTCGGTTCAGTTGCCACCGC 1140
Query 1115 CACAGCAGAATGATCAGCAGTATTGGTCTACGGGTCGACCACCGtattgattattagatt 1174
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1141 CACAACAGAATGATCAGCAGTATTGGTCTACGGGTCGGCCACCGTATTGATTATTAGATT 1200
Query 1175 gctattattattatatacacatgatcaatcgaatatatacatatatatagctatgtattt 1234
||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1201 GCTATTATTAT-ATATACA--TGATCAATGGAATATATACATATATA--GCTATGTATTT 1255
Query 1235 gtatatatgtagctatctactaatagatcttacatatatataAAGCAAGCTAACATGGAA 1294
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GTATATATGTAGCTATTTACTAATAGATCTTACATATATATAAAGCAAGCTAACATGGAA 1315
Query 1295 TGATTATAAGGAGGTGTACGAAGTATGACGTGAAGTTGAAGATGGCGATGAT---GAAGA 1351
| |||| |||||||| |||||||||||||||||||||||||| |||||| || |||||
Sbjct 1316 TCATTAAAAGGAGGTCTACGAAGTATGACGTGAAGTTGAAGACGGCGATAATATTGAAGA 1375
Query 1352 TCAACAATTCAGTAGAtg-ttt-caggttcttctttgtttttttgtttgttttctt-gtg 1408
|||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||| | |
Sbjct 1376 TCAACAATTCAGTAGATGGTTTTCAGGTTCTTCTTTGTTTTTTT-T--GTTTCCTTTGGG 1432
Query 1409 ttcgttttagtggtagatcttttttcttaaatgtttgATTAAGTGAGGTTAATTTAAGTT 1468
||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 1433 TTCGTTTTAGTGGTAGATCTTTTTTTTTTAATGTTTGATTATGTGAGGTTAATTTAAGTT 1492
Query 1469 GTTCTTTACTTT 1480
||| ||||||||
Sbjct 1493 GTTATTTACTTT 1504
> AT4G22810.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr4:11984140-11985702 FORWARD LENGTH=1563
Length=1563
Score = 553 bits (299), Expect = 2e-156
Identities = 806/1035 (78%), Gaps = 97/1035 (9%)
Strand=Plus/Plus
Query 169 ATGGATCCAGTTCAATCTCATGGATCACAAAGCTCTCTTCCTCCTCCTTTCCACGCTAGA 228
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 293 ATGGATCCAGTACAATCTCATGGATCACAAAGCTCTCTACCTCCTCCTTTCCACGCAAGA 352
Query 229 GACTTCCAATTACATCTTcaacaacaacaacaacaacaacaacatcaacaacaacaGCAG 288
||||| |||||||||||| |||| | | || |||| | || ||
Sbjct 353 GACTTTCAATTACATCTT------------------CAAC-A-A-CAGCAAC-A-AG-AG 388
Query 289 TTCTTTCTCCACCATCATCAGCAGCCGCAGAGAAACCCTGATCAAGATCATGAGCAGCAA 348
||||| ||||||||||| | |||| || ||||| || | | ||| ||| || |||
Sbjct 389 TTCTTCCTCCACCATCA-C--CAGCAACAAAGAAA-CC-AAAC-CGATGGTGACCAACAA 442
Query 349 GGAGGGTCAATAATG-AATCGATC-CATCAAGATGGATCGTGAAGAGACAAGCGATAACA 406
||||| || | | | || ||| | ||||||||||||||||||||||||||||| ||||
Sbjct 443 GGAGGATC-AGGAGGAAACCGA-CAAATCAAGATGGATCGTGAAGAGACAAGCGACAACA 500
Query 407 TGGACAACATCGCTAACAACAACAGCGGTAGCGAAGGTAAAGAGATGAGTT-TACACGG- 464
| |||||||| |||||||||| ||||||| ||||||||||| || || | |||||||
Sbjct 501 TAGACAACATAGCTAACAACA---GCGGTAGTGAAGGTAAAGACAT-AGATATACACGGT 556
Query 465 GG----G-AGAAGGAGGAAG---C---GGAG-A-A-CA---GATGACAAGAAGGCCAAGA 507
|| | ||||||||| | | |||| | | || |||||||||||| ||||||
Sbjct 557 GGTTCAGGAGAAGGAGGTGGTGGCTCCGGAGGAGATCATCAGATGACAAGAAGACCAAGA 616
Query 508 GGAAGACCAGCAGGATCCAAGAACAAACCTAAAGCTCCAATAATCATTACAAGAGACAGC 567
||||||||||| ||||||||||||||||| ||| | || || ||||| ||| | ||||||
Sbjct 617 GGAAGACCAGCGGGATCCAAGAACAAACCAAAACCACCGATTATCATCACACGGGACAGC 676
Query 568 GCAAACGCGCTTCGAACTCACGTCATGGAGATCGGAGATGGATGTGACATAGTTGACTGT 627
|||||||||||| |||| ||||| ||||||||||||||||| || ||| |||| || |
Sbjct 677 GCAAACGCGCTTAGAACCCACGTGATGGAGATCGGAGATGGCTGCGACTTAGTCGAAAGC 736
Query 628 ATGGCTACGTTCGCTA-GACGCCGCCAAAGAGGCGTTTGCGTTATGAGCGGTACAGGAAA 686
| || || || || | || | |||||| | ||||||||||||||||||||||| |||||
Sbjct 737 GTTGCCACTTTTGC-ACGAAGACGCCAACGCGGCGTTTGCGTTATGAGCGGTACTGGAAA 795
Query 687 CGTTACTAACGTCACGATACGTCAGCCTGGATCGC--CA--C-C-TGGCTCAGTGGTTAG 740
|||||||||||||| ||||||||||||||||| | | | | |||||| || |||||
Sbjct 796 TGTTACTAACGTCACTATACGTCAGCCTGGATCTCATCCTTCTCCTGGCTCGGTAGTTAG 855
Query 741 CCTTCACGGCCGGTTTGAAATCCTCTCTCTTTCCGGATCTTT-CTTGCCACCGCCTGCGC 799
|||||||| |||| || || || ||||| || |||||||| || || || || || |
Sbjct 856 TCTTCACGGAAGGTTCGAGATTCTATCTCTCTCAGGATCTTTTCTC-CCTCCTCCGGCTC 914
Query 800 CTCCTGCAGCCACTGGACTAAGCGTTTACCTAGCTGGAGGACAAGGGCAGGTCGTTGGAG 859
||||| ||||||| ||| | || |||||||| |||||||||||||| ||||| |||||||
Sbjct 915 CTCCTACAGCCACCGGATTGAGTGTTTACCTCGCTGGAGGACAAGGACAGGTGGTTGGAG 974
Query 860 GTAGTGTGGTGGGACCTTTGTTGTGTTCGGGTCCTGTAGTGGTTATGGCGGCGTCTTTTA 919
| || || || || || ||||| ||| | |||||||| || || ||||| ||||||||||
Sbjct 975 GAAGCGTAGTTGGTCCGTTGTTATGTGCTGGTCCTGTCGTTGTCATGGCTGCGTCTTTTA 1034
Query 920 GCAATGCGGCTTACGAGAGGCTACCTTTGGAAGAAGATGAGATGCAGACGCCAGTTCACG 979
|||||||||| ||||| ||| | ||||| || |||||||||||||||||||| ||||| |
Sbjct 1035 GCAATGCGGCGTACGAAAGGTTGCCTTTAGAGGAAGATGAGATGCAGACGCCGGTTCATG 1094
Query 980 GAGGCGGTGGAGGAGGTGGAGAAGGAGGTGGAATGGGATCTCCGCCGATGATGGGGCAGC 1039
| ||| |||||||| ||| | |||| | || ||||| |||||||| || |
Sbjct 1095 G---CGGAGGAGGAGGAGGATCAT----TGGA--G---TCGCCGCCAATGATGGGACAAC 1142
Query 1040 AACAAGCTA--TG-GCA----GCTATGGCGGCGGC-TCAAGGACTACCACCGAATCTTCT 1091
||| || | | ||| |||||| | | | | |||||| ||||||| ||||||||
Sbjct 1143 AACT-GCAACATCAGCAACAAGCTATGTCAG-GTCATCAAGGGTTACCACCTAATCTTCT 1200
Query 1092 TGGTTCGGTTCAGTTGCCGCCGCCACAGCAGAATGATCAG-CAGTATTGGTCTACGGGTC 1150
||||||||||||||||| || || | | || ||||||| | |||||||| ||||| |
Sbjct 1201 TGGTTCGGTTCAGTTGCAGCAGC-A-A-CA---TGATCAGTCT-TATTGGTCAACGGGAC 1253
Query 1151 GACCACCGtattgat 1165
|||||||||||||||
Sbjct 1254 GACCACCGTATTGAT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5