BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490026
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12070.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 2545 0.0
> AT4G12070.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: plasma membrane; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:7231822-7234501 FORWARD LENGTH=1800
Length=1800
Score = 2545 bits (1378), Expect = 0.0
Identities = 1645/1766 (93%), Gaps = 50/1766 (3%)
Strand=Plus/Plus
Query 1 CTCTCTCTCAAAGATTCCGTCTATAGAATCATTTTCACAATTAGAAAT-CAAAACCAAAC 59
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 29 CTCTCTCTCAAAGATTCCGTCTATAGAATCATTTTCACAATTAGAAATCCGAACCCAAAC 88
Query 60 TCAT-AATCTTT-C-TATCTCTATCTCTATCTCAATGGATCGTACCCACCAACCCGAATC 116
|||| ||| ||| | || ||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 89 TCATCAAT-TTTACAAAT-TCTCTCT-TATCTCTATGGATCGTACCCACCAACCCGAATC 145
Query 117 TCCGA---CCCGACCCGGAAACACGGTGGTCCTCTCCATAGATTGTCTTAAAGGAAGCTC 173
||||| |||||||||||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 146 TCCGACGGCCCGACCCGGAAACACCGTGGTCCTCTCAATCGATTGTCTAAAAGGAAGCTC 205
Query 174 CAAAAGCGAAGAATGGAGCGGCGATATGCTTCAAACCGGAGACATAGTGGAAGAGATCCG 233
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 206 TAAAAGCGAAGAATGGAGCGGCGATATGCTTCAAACCGGAGACATAGTAGAAGAGATCCG 265
Query 234 GATCGGGTCAGGACCCGGTTCGGCTATTTTCAAAGCTCCGTTTAAAGGAGGTAAAGCTTG 293
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 266 GATCGGGTCAGGACCCGGTTCAGCTATTTTCAAAGCTCCGTTTAAAGGAGGTAAAGCTTG 325
Query 294 GCTTCAGAAAGTTCTACACAATTCTTTTAGGAATAAAGAAACTTCAATCGTCGTCAGAGT 353
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GCTTCAGAAAGTTTTACACAATTCTTTTAGGAATAAAGAAACTTCAATCGTCGTCAGAGT 385
Query 354 CCGTCGTGGCTCCGATGATTTCTCCGATCTGTCTGCTTGTATTGTTCCTAATGAATCCGC 413
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TCGACGTGGCTCCGATGATTTCTCCGATCTGTCTGCTTGTATTGTTCCTAATGAATCCGC 445
Query 414 CGGTAAAAGACAGTATATGCTTAGATCCATTGATGACCCGAATTATACCGTTGGATTCTC 473
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 446 CGGGAAGAGACAGTATATGCTTAGATCCATTGATGACCCGAATTATACTGTTGGATTCTC 505
Query 474 GGATCGGACTGAGTCGGATTGTCTCGGTTTGCAAGAGTCAAGAGGATCAAGAATGGTAGA 533
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GGATCGAACTGAGTCGGATTGTCTCGGTTTGCAAGAGTCAAGAGGATCAAGAATGGTAGA 565
Query 534 AGCATTGGTGAGAGCAAAGCTTCAAGATGGTTATGTTTCATATCCATGGGAAAGACGAAT 593
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AGCATTGGTGAAAGCAAAGCTTCAAGATGGTTATGTTTCATATCCATGGGAAAGACGAAT 625
Query 594 GCAAGAAGCTTTACCAATCTCTGGTTCCAGCAATTTCCTATCCATTCTTTTTCTTCCCAA 653
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 626 GCAAGAAGCTTTACCAATCTCTGGTTCCAGCAATTTCCTCTCCATTCTTTTTCTTCCCAA 685
Query 654 AGCTTCTGCTTATGGAAGGACAGGTTCTCGGTACAATGACTTGGAAGACACACTTGCTCG 713
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 686 AGCTTCTGCTTATGGAAGGACAGGTTCTCGGTACAATGACTTGGAAGACACGCTTGCTCG 745
Query 714 TGCTAATGCTTGGTTAAGTTGTTCACAAGCTAATGGTGTTCCCATTGTGTTTATGAATAT 773
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 746 TGCTAATGCTTGGTTAAGTTGTTCACAAGCTAATGGTGTTCCCATTGTTTTTATGAATAT 805
Query 774 TCAGACTGAATCTTTGCTCACTAAGATATCGGGAGAAACAGCGTCGGCTACAGTTAATAC 833
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 806 TCAGACTGAATCTTTGCTCACTAAGATATCTGGAGAAACAGCGTCGGCGACGGTGAATAC 865
Query 834 AACATCGCTTTCGGATCTGTCGAATCTTGCAAATGCGAGTCTCTATGGGTTTGAGGATTA 893
|||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 866 AACATCGCTTTCGGATCTATCGAATCTTGCAAATACGAGTCTATATGGGTTTGAGGATTA 925
Query 894 TCATGGAGTTGATATCGGTGTGGTGAGAGCGGTTCGACTTTGGTTTGCTCCTCTCGGTGT 953
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 926 TCATGGAGTTGATATTGGTGTGGTGAGAGCGGTTCGGCTTTGGTTTGCTCCTCTTGGTGT 985
Query 954 TGAGTTCCCACTCGAAATCAAACTCAAAGATGATGATACCAAACTTGGCTTCTCCATTAG 1013
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TGAGTTCCCACTTGAAATCAAACTCAAAGATGATGATACCAAACTTGGCTTCTCCATTAG 1045
Query 1014 CCGCACCGAAGAGGGTTTCATTTACGTCTCATCAGTGACGGACCACGAAGATGAGAGTGC 1073
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1046 CCGCACCGAAGAGGGTTTCATTTACGTGTCATCAGTGACGGACCACGAAGACGAGAGTGC 1105
Query 1074 ACCAGCTGCAAGATCCGGCTTGAGCTCGTTGTACAGAGAAGCAGCCAAGGCATCACGTCG 1133
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1106 ACCAGCTGCAAGATCCGGCTTGAGCTCATTGTACAGAGAAGCAGCCAAGGCATCACGTCG 1165
Query 1134 TCTGGTGGTTTCTCGTGTCGGTAACCAAAAGGTATTGCCTTGGATGGTCTCCTCCACAGG 1193
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1166 TCTGGTGGTTTCTCGTGTCGGTAACCAAAAGGTATTGCCATGGATGGTGTCCTCCACAGG 1225
Query 1194 AGCAATCCGCTGCTACGACACAGTTTCGCTCAGCCAGAAACTGTCACTGCACCGTCACGC 1253
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 AGCAATTCGTTGCTACGACACAGTTTCGCTCAGCCAGAAACTGTCACTGCACCGTCACGC 1285
Query 1254 CAAAGTCCACATAGGCCTCCACGTCTTCCTCTGGGACTCCTCTGCCACTGCAGATTTCTC 1313
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1286 TAAAGTCCACATAGGCCTCCATGTCTTCCTCTGGGACTCCTCTGCCACGGCAGATTTCTC 1345
Query 1314 CTCGCCACCTAGGAGCAGCAGCGGTGGGACTCACTTGTTGTTTAGCAACGAGACGCTCGA 1373
||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1346 CTCGCCACCAAGGAGTAGCAGCGGTGGGACTCACTTGTTGTTTAGTAACGAAACGCTGGA 1405
Query 1374 TTCCACGGAGTTTCCACGGTATGGTGAGCGTTT-ACCACCGCGACAAATCGGGGACAGGC 1432
|||||||||||| ||||||||||||||| |||| ||| || |||||| |||| ||||| |
Sbjct 1406 TTCCACGGAGTTCCCACGGTATGGTGAG-GTTTTACCGCCACGACAAGTCGGAGACAGAC 1464
Query 1433 AGGTAATGCCATTGCCGGATGAAGATGTGTTTAGGTTTGAACGCGAAAATGCGGGTAATG 1492
|||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1465 AGGTGATGCCGTTGCCGGATGAAGATGTGTTTAGGTTTGAACGTGAAAATGCCGGTAATG 1524
Query 1493 CTTCATTTAAGTTCCAAGAGATTCCTTTTACCAACGAGTCTTTGTGATGT---T-T-C-- 1545
|||||||||| ||||||||||||||||| |||||||||||||||||||| | | |
Sbjct 1525 CTTCATTTAAATTCCAAGAGATTCCTTTCACCAACGAGTCTTTGTGATGGAAATCTACTT 1584
Query 1546 ----------C-TTATGTTATATTTTGGGGTGGATATGTTTTGATACGTGCATGTAAATT 1594
| ||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 1585 TTGTTTTTTTCGTTATGTTATATTTTGGGA-G-ATATGTTTTGATACGTGCATGTAAAGT 1642
Query 1595 AATTGGAACACTCAAGGAGATGAACTAAAGGTAAATTAGTTATATGTATTTCTATATTTA 1654
||||||||||||| |||||||||||||| ||||| |||||||||| | | |||||||||
Sbjct 1643 AATTGGAACACTCGAGGAGATGAACTAAGGGTAAGTTAGTTATAT-T-T--CTATATTTA 1698
Query 1655 GTTTGCTCCGGTGAT----C--G-ATGCTTGTTCA------C-TTTCTTTGTAAGGGAAA 1700
||||||||||||||| | | ||||||||||| | ||||||||||| ||||
Sbjct 1699 GTTTGCTCCGGTGATAGATCATGGATGCTTGTTCAGTTGTTCCTTTCTTTGTAATGGAAG 1758
Query 1701 GTTTTGTTATCTTTAACTCCATAACA 1726
| ||||||||||| ||||||||||||
Sbjct 1759 GATTTGTTATCTTCAACTCCATAACA 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85340926500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5