BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490031
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12230.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2134 0.0
AT1G26558.1 | Symbols: | other RNA | chr1:9175611-9177556 FORW... 56.5 7e-07
> AT4G12230.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:7284519-7287542 FORWARD LENGTH=1499
Length=1499
Score = 2134 bits (1155), Expect = 0.0
Identities = 1311/1384 (95%), Gaps = 20/1384 (1%)
Strand=Plus/Plus
Query 1 CGGATGTTGAAACTCTCCGATCGGCGATGAAAGGCGTCTCTTCGGCGCCCGGAGATTACG 60
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 101 CGGATGTTGAAAATCTCCGATCGGCGATGAAAGGCGTCTCTTCGACGCCCGGAGATTACG 160
Query 61 TCTACTTTAAATCTCAGGTTCCTCTTCACAAGATTCCCATTGGGACAAAGCAATGGCGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TCTACTTTAAATCTCAGGTTCCTCTTCACAAGATTCCCATTGGGACAAAGCAATGGCGTT 220
Query 121 ACTATGACTTTGGTCCAAAGACTGTTCCTCCGCTCATATGTATTCCTGGAATCGCAGGAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 221 ACTATGACTTTGGTCCAAAGACTGTTCCTCCGCTCATATGTATTCCTGGAATTGCAGGAA 280
Query 181 CTGCAGATGTTTACTATAAACAGATTATGGCACTCTCTATGAAGGGTTATCGGATAATCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 281 CTGCAGATGTTTACTATAAACAGATTATGGCACTCTCTATGAAGGGTTATCGGGTAATCT 340
Query 241 CAGTTGACATTCCACGGGTTTGGAATTATCATGAGTGGATTCAAGCATTTGAGAAATTCT 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 341 CAGTTGATATTCCACGGGTTTGGAATTATCATGAGTGGATTCAAGCATTTGAGAAGTTCT 400
Query 301 TGGATACCATTGATGTTCATCACGTGCATCTCTATGGTACCTCTCTTGGAGGCTTCTTAG 360
|||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 401 TGGACACCATTGATGTTCATCACGTGCATCTCTACGGTACTTCCCTTGGAGGCTTCTTAG 460
Query 361 CACAACTCTTTGCTCATCACCGTCCAAGGCGGGTTAAATCATTAGTTCTATCAAATACAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CACAACTCTTTGCTCATCACCGTCCAAGGCGGGTTAAATCATTAGTTCTATCAAATACAT 520
Query 421 ATTTGGATACTCGCACTTTTGCTGCTGCTATGCCATGGGCTCCTTTTGTTAGTTGGACTC 480
||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||| |
Sbjct 521 ATTTGGATACTCGTACTTTTGCTACTGCAATGCCATGGGCTCCTTTTGTCAGTTGGACCC 580
Query 481 CTTCTTTTTTGCTGAAACGATACGTCTTAACAGGAATACGTGATGGACCTCACGAACCCT 540
||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 581 CTTCTTTTTTGCTTAAACGATACGTCTTAACAGGAATTCGTGACGGACCTCATGAACCCT 640
Query 541 TTATCGCTGATTCTGTCGACTTTGCTGTGTCTCAGGTTGAGACGTTGTCAAAAGATGATT 600
|||| ||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 641 TTATAGCTGACTCTGTCGACTTTGCTGTTTCTCAGGTGGAGACATTGTCGAAAGATGATT 700
Query 601 TGGCTTGCCGGTTAACTTTAACAGTGGATGCAGCTTCTGTGGGATCTCTACTACTCTCTG 660
|||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 701 TGGCTTCCCGGTTAACTTTAACTGTGGATGCTGCTTCCGTGGGATCTCTACTACTCTCTG 760
Query 661 ATTCCTCCA-TCACTATAATGGATACGAATGATTACTGCGCAATACCACAACATCTTAAA 719
|||| || | | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 761 ATTCTTC-AGTTACTATAATGGATACAAATGATTACTGCGCAATACCACAACATCTTAAA 819
Query 720 GATGAACTTACAGAGAGGTATCCCGAAGCAAGGAGAGCTTACTTAAAGACCGGAGGAGAT 779
|||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 820 GATGAACTAACAGAGAGGTATCCTGAAGCAAGGAGAGCTTACTTAAAGAGTGGAGGAGAT 879
Query 780 TTCCCATTCCTATCACGGCCCGACGAAGTCAATTTGCATCTACAGCTGCACCTAAGGCGG 839
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 880 TTCCCATTCCTATCACGGCCCGACGAAGTCAATTTGCATCTACAGCTACACTTAAGGCGG 939
Query 840 GTAGGAGTAGAACCACGACCCGAAGTGGTTAAAAGCATTTCAAAAGGCGGCGCAGATGGC 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 940 GTAGGAGTAGAACCACGACCCGAAGTGGTTAAAAGCATTCCAAAAGGCGGCGCAGATGGC 999
Query 900 ACAGACGGAAGCAGCCAGAGCAAGAAGAAGACTGATGAGGAGAAGGACGACCGTAACAAC 959
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1000 ACAGACGGTAGCAGCCAGAGCAAGAAGAAGAGTGATGAGGAGAAGGACGACCGTAACAAC 1059
Query 960 AATATGCCTCAAGGCTCTGGAAGCTCATCTTCAGATCAATCACCGACATTTCCAGAAAGT 1019
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AATATGCCTCAAGACTCTGGAAGCTCATCTTCAGATCAATCACCGACATTTCCAGAAAGT 1119
Query 1020 TCCGGAAGCTCCAACGATCCGCCGTTACCAACAGACACCATTCAGTTGCAT-AGTTCATC 1078
||||||||||||||||||||||| ||||| ||||||||||||||||| | | ||||||||
Sbjct 1120 TCCGGAAGCTCCAACGATCCGCCTTTACCCACAGACACCATTCAGTTAC-TGAGTTCATC 1178
Query 1079 AATGAACAAACTCATATTAGTTCAACTCGCTGGTGAAGTTTATCAGTCCTGTGTGGTTCT 1138
| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1179 ATTGAACAACCTCATATTAGTTCAACTCGCTGGTGAAGTTTATCAGTCTTGTGTGGTTTT 1238
Query 1139 CACGTTGTGTTACTGTACATTGGTTTTGGTTCACGGTGGTGGTTTTATCTCCAGACAATT 1198
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 CACATTGTGTTACTGTACATTGGTTTTGGTTCACGGTGGTGGTTTTATCTCCAGACAATT 1298
Query 1199 Ggtttagtgttctttatttatttatttacctcttttttgttgtttaaatcttttttactt 1258
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct 1299 GGTTTAGTGTTCTTTATTTATTTATT-ACCTCTTTT--GTTGTTTAAATCTTTTT-ACTT 1354
Query 1259 ttgggtttctttgatctgttttggtttctcttgactttt-gtgtaagtttg-ACAGACGA 1316
||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| |
Sbjct 1355 TTGGGTTTCTTTGATCTGTTTTGGTTTCTCTTGACTTTTTGTATAAGTTTGTA-AGACAA 1413
Query 1317 AGCAAGAGTTCTTTGTATGTTTCATATGTTTCAAGTTATTACACTTTTGGAAGAAAACTT 1376
|||||||||||| ||||||||||| | ||| | ||| |||||||||||||||||||
Sbjct 1414 AGCAAGAGTTCTCTGTATGTTTCA-A-GTT--A--TTA---CACTTTTGGAAGAAAACTT 1464
Query 1377 TGGT 1380
||||
Sbjct 1465 TGGT 1468
> AT1G26558.1 | Symbols: | other RNA | chr1:9175611-9177556 FORWARD
LENGTH=483
Length=483
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 99 ATTGGGACAAAGCAATGGCGTTACTATGAC 128
||||||||||||||||||||||||||||||
Sbjct 388 ATTGGGACAAAGCAATGGCGTTACTATGAC 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5