BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490032 Length=1317 Score E Sequences producing significant alignments: (Bits) Value AT4G12240.1 | Symbols: | zinc finger (C2H2 type) family protei... 1914 0.0 > AT4G12240.1 | Symbols: | zinc finger (C2H2 type) family protein | chr4:7287803-7289225 FORWARD LENGTH=1423 Length=1423 Score = 1914 bits (1036), Expect = 0.0 Identities = 1232/1325 (93%), Gaps = 19/1325 (1%) Strand=Plus/Plus Query 1 GCCGAACTCTAATCGGATCCGGGTCGGGTATGTAATGTAACCCGGGtttttttGAAGCCT 60 |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1 GCCGAACTCTAATCGGATCCGGGTCGGGTATGTAATGTAAACCGGG-TTTTTTGAAGCCC 59 Query 61 CCATCTTCTCCGTCGATTTTGAAGATTCCGACGATGTTTTCAAGATTCGTCTTGAGAATT 120 |||||||||||||||||||| ||||| ||| |||||||||||||||| ||| | | || | Sbjct 60 CCATCTTCTCCGTCGATTTTAAAGATCCCGGCGATGTTTTCAAGATTTGTCCTAAAAAGT 119 Query 121 TGGAAACCAAAAACTCAATTCACATCTCTCAATTCAATCAAAGGTTTTAGC--T---T-T 174 |||| ||| ||||| ||| ||||||||||||||||||||||||||||||| | | | Sbjct 120 TGGAGACCTAAAACCCAAACCACATCTCTCAATTCAATCAAAGGTTTTAGCTTTAGCTCT 179 Query 175 AGCTCGATAAACCCTAAACCAAAAATCCGAGTGGGGGTTTGGTGGGATCTAGACAACAAA 234 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 180 AGCTCGATAAACCCTAAACCCAAAATCCGAGTAGGGGTTTGGTGGGATCTAGACAACAAA 239 Query 235 CCACCAGCCTCTTTCCCGCCTTACGACGCCGCCGTCAAGCTCCGAACCGCCGCGTCGTCT 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CCACCAGCCTCTTTCCCGCCTTACGACGCCGCCGTCAAGCTCCGAACCGCCGCGTCGTCT 299 Query 295 TTCGGATCCGTGAAGCTAATGATGGCGTATGCGAATCGTCACGCCTTTAGCTACGTTCCT 354 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TTCGGAACCGTGAAGCTAATGATGGCGTATGCGAATCGTCACGCCTTTAGCTACGTTCCT 359 Query 355 TTAGAAGTAAGAGAACAGAGGAAAGATAGAAAATTGTTAAACCAATTAGAGAACAAAGGT 414 |||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||| Sbjct 360 TTAGAAGTTCGAGAACAGAGGAAAGATAGGAAATTGCTAAACAAATTAGAGAACAAAGGT 419 Query 415 TTAGTTAAACCGCCGGAGCCTTACTTCTGCGGCGTTTGTGACCGGAGATTCTACACGAAT 474 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 420 TTAGTTAAACCACCGGAGCCTTACTTCTGCGGTGTTTGTGACCGGAGATTCTACACTAAC 479 Query 475 GAGAAGCTAATCAATCATTTTAAGCAGATTCATGAGACTGAGAATCAGAAACGTATGAGA 534 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 480 GAGAAGCTAATTAATCATTTCAAGCAGATTCATGAGACAGAGAATCAGAAACGTATGAGA 539 Query 535 CAGATTGAATCTTCGAAAGGACATCAAAGAGTGAGGCTTGTGGCTAAGTACTCCATGAAG 594 ||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||| Sbjct 540 CAGATTGAATCTTCGAAAGGACATCGAAGAGTGAGACTTGTGGCTAAGTATTCGATGAAG 599 Query 595 ATTGAGAAGTATAAAAGAGCGGCGAGGAACATTTTGACGCCGAAAGAAGGTTACGGGTTA 654 ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||| Sbjct 600 ATTGAGAAGTATAAAAGAGCGGCGAGGAATGTTTTGACTCCGAAGGAAGGTTACGGTTTA 659 Query 655 GCGGATGAGCTGAAACGAGCTGGTTTTTGGGTGAAAATGGTGAGTGATAAGCCAGAAGCT 714 || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 660 GCTGATGAGCTGAAACGAGCTGGTTTTTGGGTGAAGATGGTTAGTGATAAGCCAGATGCT 719 Query 715 GCTGATAAGGCGTTGAAGGAACATTTGGTGGAAATGATGGATAAGAGAGAAGTGGAATGT 774 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| Sbjct 720 GCTGATAAGGCGTTGAAGGAACATTTGGTTGAAGTGATGGATAAGAGAGAAGTGGAGTGT 779 Query 775 GTTGTTTTAGTGTCTGATGATTCCGATTATGCGGGGATTTTGTGGGAAGCGAAGGAGAGG 834 ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| Sbjct 780 GTTGTTTTAGTGTCTGATGATTCTGATTTTGCGGGGATTTTGTGGGAAGCTAAGGAGAGG 839 Query 835 TGTTTGAGGACGGTTGTGATTGGAGATTCGAATGAAGGTGCGTTGAAGAGAGTAGCTGAT 894 |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| Sbjct 840 TGTTTGAGGACGGTTGTGATTGGAGATTCGAACGAAGGTGCGCTGAAGCGAGTAGCGGAT 899 Query 895 GTTGCGTATTCGTGGAAGGAAGTTGT-GATGGGGAAGGCGAAGAAGGAAGTTGAGAAAGT 953 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 900 GTTGCGTATTCGTGGAAGGAAGT-GACGATGGGGAAGGCGAAGAAGGAAGTTGAGAAAGT 958 Query 954 TGTGGGGAAGTGGAATGATAGAGATGTGTTGAAGAAGTTGGAGTGGAGTTATGATCCTGC 1013 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 959 TGTGGGGAAGTGGAAGGATAGAGATGTGTTGAAGAAGTTGGAGTGGACTTATGATCCTGC 1018 Query 1014 TTTGGAGAAAGAGAGAGGAGGTTCTTGCGGTGTTTGGGATTACGAGTTTGATTGTGATGA 1073 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1019 TTTGGAGAAAGAGAGAGGTGGTTCTTGCGGTGTTTGGGATTACGAGTTTGATT---ATGA 1075 Query 1074 CGATGATGATGAGATTGAGAATGGAACAGAGGTGGAATCGGTGGAGATTGGAGATGGTGG 1133 |||||| || ||||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 1076 ---TGATGA-GA--TTGAGAATGGAACAGAGGTGGAACCTGTGGAGATTGGTGATGGTGT 1129 Query 1134 TGATTGGTGGAAGATAGATAATGAAGATAGTGTTGGATCTTCAAGACCTTGTCGATAACA 1193 ||| ||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||| Sbjct 1130 TGACTGGTGGAAGATCGATACTGAAGATGGTGTTGGATCTTCAAGAACTTGTCGATAACA 1189 Query 1194 TCATAGCAT-TGTCGAAATTGGTTGCGCAGAGGAAGTTAACATGGTCTAGGCTAGAGAAC 1252 |||| |||| ||||| ||| |||||||||||||| ||||||||| ||||||||||||| Sbjct 1190 TCATCGCATATGTCGTGGTTGATTGCGCAGAGGAAGATAACATGGTATAGGCTAGAGAAC 1249 Query 1253 AATTTTGTGAATCTATTGGCATATTACATAAACTTCAGGCTAGAGAACATTCATTGTTTC 1312 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1250 AATCTTGTGAATCTATTGGCATATTACATAAACTTCAGGCTAGAGAACATTCATTGTTTC 1309 Query 1313 TTGTT 1317 ||||| Sbjct 1310 TTGTT 1314 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64808903595 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5