BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490032
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12240.1 | Symbols: | zinc finger (C2H2 type) family protei... 1914 0.0
> AT4G12240.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr4:7287803-7289225 FORWARD LENGTH=1423
Length=1423
Score = 1914 bits (1036), Expect = 0.0
Identities = 1232/1325 (93%), Gaps = 19/1325 (1%)
Strand=Plus/Plus
Query 1 GCCGAACTCTAATCGGATCCGGGTCGGGTATGTAATGTAACCCGGGtttttttGAAGCCT 60
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 GCCGAACTCTAATCGGATCCGGGTCGGGTATGTAATGTAAACCGGG-TTTTTTGAAGCCC 59
Query 61 CCATCTTCTCCGTCGATTTTGAAGATTCCGACGATGTTTTCAAGATTCGTCTTGAGAATT 120
|||||||||||||||||||| ||||| ||| |||||||||||||||| ||| | | || |
Sbjct 60 CCATCTTCTCCGTCGATTTTAAAGATCCCGGCGATGTTTTCAAGATTTGTCCTAAAAAGT 119
Query 121 TGGAAACCAAAAACTCAATTCACATCTCTCAATTCAATCAAAGGTTTTAGC--T---T-T 174
|||| ||| ||||| ||| ||||||||||||||||||||||||||||||| | | |
Sbjct 120 TGGAGACCTAAAACCCAAACCACATCTCTCAATTCAATCAAAGGTTTTAGCTTTAGCTCT 179
Query 175 AGCTCGATAAACCCTAAACCAAAAATCCGAGTGGGGGTTTGGTGGGATCTAGACAACAAA 234
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 180 AGCTCGATAAACCCTAAACCCAAAATCCGAGTAGGGGTTTGGTGGGATCTAGACAACAAA 239
Query 235 CCACCAGCCTCTTTCCCGCCTTACGACGCCGCCGTCAAGCTCCGAACCGCCGCGTCGTCT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCACCAGCCTCTTTCCCGCCTTACGACGCCGCCGTCAAGCTCCGAACCGCCGCGTCGTCT 299
Query 295 TTCGGATCCGTGAAGCTAATGATGGCGTATGCGAATCGTCACGCCTTTAGCTACGTTCCT 354
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCGGAACCGTGAAGCTAATGATGGCGTATGCGAATCGTCACGCCTTTAGCTACGTTCCT 359
Query 355 TTAGAAGTAAGAGAACAGAGGAAAGATAGAAAATTGTTAAACCAATTAGAGAACAAAGGT 414
|||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 360 TTAGAAGTTCGAGAACAGAGGAAAGATAGGAAATTGCTAAACAAATTAGAGAACAAAGGT 419
Query 415 TTAGTTAAACCGCCGGAGCCTTACTTCTGCGGCGTTTGTGACCGGAGATTCTACACGAAT 474
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 420 TTAGTTAAACCACCGGAGCCTTACTTCTGCGGTGTTTGTGACCGGAGATTCTACACTAAC 479
Query 475 GAGAAGCTAATCAATCATTTTAAGCAGATTCATGAGACTGAGAATCAGAAACGTATGAGA 534
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 480 GAGAAGCTAATTAATCATTTCAAGCAGATTCATGAGACAGAGAATCAGAAACGTATGAGA 539
Query 535 CAGATTGAATCTTCGAAAGGACATCAAAGAGTGAGGCTTGTGGCTAAGTACTCCATGAAG 594
||||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||
Sbjct 540 CAGATTGAATCTTCGAAAGGACATCGAAGAGTGAGACTTGTGGCTAAGTATTCGATGAAG 599
Query 595 ATTGAGAAGTATAAAAGAGCGGCGAGGAACATTTTGACGCCGAAAGAAGGTTACGGGTTA 654
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||
Sbjct 600 ATTGAGAAGTATAAAAGAGCGGCGAGGAATGTTTTGACTCCGAAGGAAGGTTACGGTTTA 659
Query 655 GCGGATGAGCTGAAACGAGCTGGTTTTTGGGTGAAAATGGTGAGTGATAAGCCAGAAGCT 714
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 660 GCTGATGAGCTGAAACGAGCTGGTTTTTGGGTGAAGATGGTTAGTGATAAGCCAGATGCT 719
Query 715 GCTGATAAGGCGTTGAAGGAACATTTGGTGGAAATGATGGATAAGAGAGAAGTGGAATGT 774
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||
Sbjct 720 GCTGATAAGGCGTTGAAGGAACATTTGGTTGAAGTGATGGATAAGAGAGAAGTGGAGTGT 779
Query 775 GTTGTTTTAGTGTCTGATGATTCCGATTATGCGGGGATTTTGTGGGAAGCGAAGGAGAGG 834
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 780 GTTGTTTTAGTGTCTGATGATTCTGATTTTGCGGGGATTTTGTGGGAAGCTAAGGAGAGG 839
Query 835 TGTTTGAGGACGGTTGTGATTGGAGATTCGAATGAAGGTGCGTTGAAGAGAGTAGCTGAT 894
|||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||
Sbjct 840 TGTTTGAGGACGGTTGTGATTGGAGATTCGAACGAAGGTGCGCTGAAGCGAGTAGCGGAT 899
Query 895 GTTGCGTATTCGTGGAAGGAAGTTGT-GATGGGGAAGGCGAAGAAGGAAGTTGAGAAAGT 953
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 900 GTTGCGTATTCGTGGAAGGAAGT-GACGATGGGGAAGGCGAAGAAGGAAGTTGAGAAAGT 958
Query 954 TGTGGGGAAGTGGAATGATAGAGATGTGTTGAAGAAGTTGGAGTGGAGTTATGATCCTGC 1013
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 959 TGTGGGGAAGTGGAAGGATAGAGATGTGTTGAAGAAGTTGGAGTGGACTTATGATCCTGC 1018
Query 1014 TTTGGAGAAAGAGAGAGGAGGTTCTTGCGGTGTTTGGGATTACGAGTTTGATTGTGATGA 1073
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 TTTGGAGAAAGAGAGAGGTGGTTCTTGCGGTGTTTGGGATTACGAGTTTGATT---ATGA 1075
Query 1074 CGATGATGATGAGATTGAGAATGGAACAGAGGTGGAATCGGTGGAGATTGGAGATGGTGG 1133
|||||| || ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1076 ---TGATGA-GA--TTGAGAATGGAACAGAGGTGGAACCTGTGGAGATTGGTGATGGTGT 1129
Query 1134 TGATTGGTGGAAGATAGATAATGAAGATAGTGTTGGATCTTCAAGACCTTGTCGATAACA 1193
||| ||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 1130 TGACTGGTGGAAGATCGATACTGAAGATGGTGTTGGATCTTCAAGAACTTGTCGATAACA 1189
Query 1194 TCATAGCAT-TGTCGAAATTGGTTGCGCAGAGGAAGTTAACATGGTCTAGGCTAGAGAAC 1252
|||| |||| ||||| ||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 1190 TCATCGCATATGTCGTGGTTGATTGCGCAGAGGAAGATAACATGGTATAGGCTAGAGAAC 1249
Query 1253 AATTTTGTGAATCTATTGGCATATTACATAAACTTCAGGCTAGAGAACATTCATTGTTTC 1312
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AATCTTGTGAATCTATTGGCATATTACATAAACTTCAGGCTAGAGAACATTCATTGTTTC 1309
Query 1313 TTGTT 1317
|||||
Sbjct 1310 TTGTT 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5