BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490033
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12250.1 | Symbols: GAE5 | UDP-D-glucuronate 4-epimerase 5 |... 2143 0.0
> AT4G12250.1 | Symbols: GAE5 | UDP-D-glucuronate 4-epimerase 5
| chr4:7289192-7290902 REVERSE LENGTH=1711
Length=1711
Score = 2143 bits (1160), Expect = 0.0
Identities = 1320/1398 (94%), Gaps = 7/1398 (1%)
Strand=Plus/Plus
Query 1 CCTAACCCTAATCGACATTTTCTCCGATTTCTGAAT--T-CTCCGGCGAAAATGTCTCAC 57
|||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||
Sbjct 4 CCTAACCCTAATCGACATTTTCTCCGATTTCTAAATCCTCCTCCGGTGAAAATGTCTCAC 63
Query 58 CTTGATGATCTTCCTTCTACTCCCGGAAAGTACAAAACCGATAAAGTTCCTCCGTACGGG 117
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 64 CTTGATGATCTTCCTTCTACTCCCGGAAAGTACAAAACCGATAAAGTTCCACCGTACGGG 123
Query 118 ATTCTCCACCACCACCGTTACCTCCGTCTCTCGAAACTCACGCTTTGGGCTTCTCTCTTC 177
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 124 ATTCTCCACCACCACCGTTACCTCCGTCTCTCAAAACTCACCCTTTGGGCTTCTCTCTTC 183
Query 178 CTCGCTCTGTTTCTCTTCTACCTTGTTTTATCTCCTCCTCCGTCACCATCCCGCCGGAAT 237
|||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 184 CTCGCTCTCTTCCTCTTCTACCTCGTTTTATCTCCTCCTCCGTCACCATCTCGCCGGAAT 243
Query 238 CTCAACGATTCTTCCTCAATTTCCGCCGCTAAATACGGTGGCTCTCACTGGGAGAAACAA 297
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 244 CTCAACGATTCTTCCTCCATTTCCGCCGCGAAATACGGCGGCTCTCACTGGGAGAAACAA 303
Query 298 GTTCGTAAATCCGCTCGTCCTAGGTCTCGCGGCGGTTTAACGGTATTAGTCACCGGAGCT 357
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 304 GTCCGTAAATCCGCTCGTCCTAGGTCTCACGGCGGTTTAACGGTATTAGTCACCGGAGCT 363
Query 358 TCCGGATTCGTCGGTACTCATGTCTCGATCGCGTTACGAAGACGCGGCGATGGTGTTCTA 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 364 TCCGGATTCGTCGGTACTCACGTCTCGATCGCGTTACGAAGACGCGGCGATGGTGTTCTA 423
Query 418 GGTCTTGACAATTTCAATCGGTACTACGATCCAAAGCTTAAACGAGCAAGACAAGGTCTT 477
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 424 GGTCTCGACAATTTCAATCGATACTACGATCCAAAGCTTAAACGAGCAAGACAAGGCCTT 483
Query 478 TTAGAACGATCAGGTGTTTTCGTTGTTGAAGGCGATATTAACGACGCCGTTTTGCTTAGA 537
|||||| |||||||||||||||| || ||||||||||| |||||||||||||| || |||
Sbjct 484 TTAGAAAGATCAGGTGTTTTCGTAGTCGAAGGCGATATAAACGACGCCGTTTTACTCAGA 543
Query 538 AAGCTCTTTGATGTTGTCCTCTTCACACATGTTATGCATCTAGCTGCTCAAGCTGGTGTG 597
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 544 AAGCTCTTTGATGTTGTCCTCTTCACACATGTTATGCATCTCGCTGCTCAAGCTGGTGTG 603
Query 598 CGTTACGCAATGCAAAACCCAGGATCGTATGTGAACAGTAACATTGCTGGGTTTGTGAAT 657
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 604 CGTTACGCAATGCAAAACCCTGGCTCATATGTTAACAGTAACATTGCTGGGTTTGTGAAT 663
Query 658 TTATTAGAAGTGTCGAAATCAGCGAATCCGCAGCCTGCGATTGTGTGGGCTTCGTCTAGC 717
|||||||||| |||||||||||||||||||| ||||| || || |||||||| ||||||
Sbjct 664 CTATTAGAAGTATCGAAATCAGCGAATCCGCAACCTGCTATAGTCTGGGCTTCCTCTAGC 723
Query 718 TCTGTTTATGGTCTCAATTCGAAAGTACCATTTTCGGAGAAAGATCGAACGGATCAACCG 777
|||||||||||||| |||||||||||||| |||||||||||||| || || ||||||||
Sbjct 724 TCTGTTTATGGTCTGAATTCGAAAGTACCCTTTTCGGAGAAAGACCGTACCGATCAACCA 783
Query 778 GCGAGTTTATACGCGGCGACGAAGAAAGCTGGTGAAGGAATTGCGCATACTTATAACCAT 837
|||||||| ||||| || ||||||||||| ||||||||||||||||||||||| || ||
Sbjct 784 GCGAGTTTGTACGCAGCTACGAAGAAAGCAGGTGAAGGAATTGCGCATACTTACAATCAC 843
Query 838 ATCTATGGTTTATCGCTT-ACGGGTTTGCGGTTTTTCACTGTTTATGGACCTTGGGGTAG 896
||||| || |||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 844 ATCTACGGATTATCG-TTAACGGGTTTGCGGTTTTTCACTGTCTATGGACCTTGGGGTAG 902
Query 897 ACCTGACATGGCGTATTTCTTCTTTACTAAAGATATTCTTAAAGGGAAGACGATTACGGT 956
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 903 ACCAGATATGGCGTATTTCTTCTTTACTAAAGATATTCTTAAAGGGAAGACGATTACTGT 962
Query 957 TTTTGAATCTCCTGATAAAGGTAGTGTTGCTAGGGATTTCACTTACATTGATGATATTGT 1016
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 963 GTTTGAATCTCCTGATAAAGGTAGTGTTGCTAGGGACTTCACTTACATTGATGATATTGT 1022
Query 1017 AAAAGGTTGTTTAGGTGCGTTAGATACTGCTGAGAAGAGTACTGGTAGTGGTGGTAAGAA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 AAAAGGTTGTTTAGGTGCGTTAGATACTGCTGAGAAGAGTACTGGTAGTGGTGGTAAGAA 1082
Query 1077 GAAAGGTCCTGCCATGTTTAGGATTTATAATTTGGGGAATACTTCGCCTGTGCCGGTAAC 1136
|||||||||||| |||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 1083 GAAAGGTCCTGCTATGTTTAGGATTTATAATTTGGGGAATACTTCTCCTGTTCCTGTTAC 1142
Query 1137 TAAGCTTGTGACTATATTAGAGAAGCTTTTGAAGATGAAAGCTAAGAAAAAGATCATGCC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TAAGCTTGTGACTATATTAGAGAAGCTTTTGAAGATGAAAGCTAAGAAAAAGATCATGCC 1202
Query 1197 TTTACCGAGGAATGGGGATGTTGAGTTTACTCACGCGAATATCACGTTAGCGCAAGCAGA 1256
| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1203 TCTACCGAGGAATGGGGATGTTGAGTTTACTCATGCCAATATCACGTTAGCGCAAGCAGA 1262
Query 1257 GCTTGGTTATAAACCTGCGGTTGATCTTGAGACGGGTTTGAAAAAGTTTGTGAAATGGTA 1316
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GCTCGGTTATAAACCTGCGGTTGATCTTGAGACGGGTTTGAAAAAGTTTGTGAAATGGTA 1322
Query 1317 TATGGGTTTTTACACAGGGTCGAAGAAGAAGAGTTCTTGGTGATCTCTATGTCTCTGCTC 1376
||||||||||||||| || |||||||||||||||||||||||| |||| | ||||||||
Sbjct 1323 TATGGGTTTTTACACTGGCTCGAAGAAGAAGAGTTCTTGGTGAGCTCTGTCTCTCTGCT- 1381
Query 1377 TA-GTCATGGTCTCTGTT 1393
|| |||||||||||||||
Sbjct 1382 TAAGTCATGGTCTCTGTT 1399
Score = 326 bits (176), Expect = 5e-88
Identities = 208/222 (94%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 1394 CCGAGCACTTGCATCGCGAGGAAAATGGCTACACTTACGTGTCTGCATTGTTTCTGTGTT 1453
|||||||||||||| || ||||||| | ||||||||| |||||||||||||||||||
Sbjct 1445 CCGAGCACTTGCATTGCCAGGAAAA---AT-CACTTACGTATCTGCATTGTTTCTGTGTT 1500
Query 1454 GCTAGATTTTGCTTCATTTATTTGTTAGTAGA-TTTGAGCAATGTACAGCTTCATCACTT 1512
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1501 GCTAGATTTTGCTTCATTTATTTGTTAGTAGATTTTGAGCAATGTACAGCTTCATCACTT 1560
Query 1513 ATG-TGTTTCAATTGTGGAATCTCGATTGTCTTTTCCATCATGTCGGAGGAATAAAGTAG 1571
| | |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1561 A-GATGTTTCAATTGTCGAAACTCAATTGTCTTTTCCATCATGTCGGAGGAATAAAGTAG 1619
Query 1572 CTTGGATTTTGATGCATATACTCTGTAGTAATTCAATCTATT 1613
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CTTGGATTTTGATGCATATACTCTGTAGTAATTCAATCTATT 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5