BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490038
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27190.1 | Symbols: PAP1, ATPAP1, PAP12, ATPAP12 | purple ac... 2346 0.0
> AT2G27190.1 | Symbols: PAP1, ATPAP1, PAP12, ATPAP12 | purple
acid phosphatase 12 | chr2:11621222-11623618 REVERSE LENGTH=1768
Length=1768
Score = 2346 bits (1270), Expect = 0.0
Identities = 1488/1593 (93%), Gaps = 15/1593 (1%)
Strand=Plus/Plus
Query 35 TTTAATTTCCCAAAGAGaaaaaaaaTCTAAAGCACGTTCTTCGTCTCGGATTCAGA-AAA 93
||||||||||| | | ||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 113 TTTAATTTCCC--A-A-AAAGAAAATATAAAGCACGTTCTTCGTCTCGGATTCAGAGAAA 168
Query 94 TCTAACCTTGAAGATGAGTTCAAGATCTGACCTCACAAGCAAACGAGTTTCCTTCATAAT 153
|||| ||||||||||||||||||||||||||||| || |||||||||||| || |||||
Sbjct 169 -CTAATCTTGAAGATGAGTTCAAGATCTGACCTCAAAATCAAACGAGTTTCTTTGATAAT 227
Query 154 CTTCTTGCTATGTGTTCTTGTTGAGTTATGCCATGGAGGAATCACCAGTGAATATGTCAG 213
|||||||||| |||||||||||||||| ||| ||||||| |||| ||||||||||||||
Sbjct 228 CTTCTTGCTAAGTGTTCTTGTTGAGTTTTGCTATGGAGGGTTCACAAGTGAATATGTCAG 287
Query 214 AGCAAGTGATTTACCAGATGACATGCCATTAGACAGCGATGTCTTTGCACTTCCTCCTGG 273
|| ||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||
Sbjct 288 AGGAAGTGATTTACCAGATGACATGCCACTAGACAGCGATGTTTTTGAAGTTCCTCCTGG 347
Query 274 TCCTAATTCACCACAACAAGTTCATGTAACGCAAGGGAATCATGAAGGTAACGGAGTGAT 333
|||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 348 TCCTAATTCACCTCAACAGGTTCATGTAACGCAAGGGAACCATGAAGGTAATGGAGTGAT 407
Query 334 CATTTCTTGGGTGACTCCGGTTAAGCCTGGTTCAAATACTGTTCATTATTGGTTTGAGAA 393
||||||||||||||||||||||||||| ||||| || |||||||| ||||||| ||||||
Sbjct 408 CATTTCTTGGGTGACTCCGGTTAAGCCCGGTTCTAAGACTGTTCAATATTGGTGTGAGAA 467
Query 394 TGAGAAATCGAAGAAGCAAGAAGAAGGAACCGTTAACACCTACCGGTTCTTTAATTACAC 453
||||||||||| ||| |||| ||||| ||| ||||| || ||||||||||||||||||||
Sbjct 468 TGAGAAATCGAGGAAACAAGCAGAAGCAACAGTTAATACTTACCGGTTCTTTAATTACAC 527
Query 454 TTCCGGTTACATCCACCATTGCCTCATCGATGATTTGGAATTTGATACGAAATATTACTA 513
|| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 528 GTCTGGTTATATTCACCATTGCCTCATCGATGATTTGGAATTTGATACGAAATACTACTA 587
Query 514 CGAAATTGGGAGTGGCAAGTGGTCCAGACGGTTCTGGTTCTTCACT-CCGCCTGAACCAG 572
|||||||||||||||||||||||||||||||||||||||||| | | |||||| || |||
Sbjct 588 CGAAATTGGGAGTGGCAAGTGGTCCAGACGGTTCTGGTTCTTTA-TCCCGCCTAAATCAG 646
Query 573 GCCCTGACGTACCTTACACATTTGGATTAATTGGGGATCTAGGACAAACTTATGACTCAA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GCCCTGACGTACCTTACACATTTGGATTAATTGGGGATCTAGGACAAACTTATGACTCAA 706
Query 633 ATAGTACGTTAAGCCATTATGAGATGAATCCGGGAAAAGGACAGGCGGTTCTGTTTGTGG 692
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 707 ATAGTACGTTAAGCCATTATGAGATGAATCCGGGAAAAGGACAAGCGGTTCTGTTTGTAG 766
Query 693 GAGACTTGTCTTACGCGGATCGATACCCTAACCATGACAACAATAGATGGGATACTTGGG 752
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 767 GAGACTTGTCTTACGCGGATCGCTACCCTAACCACGACAACAATAGATGGGATACTTGGG 826
Query 753 GAAGGTTCGTTGAGAGAAGTGTTGCTTATCAACCTTGGATATGGACTCCTGGCAACCACG 812
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 827 GAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTGGCAACCACG 886
Query 813 AAATCGACTTCGTTCCTGACATTGGTGAAACAGAACCATTCAAGCCATTTAAGAATCGGT 872
|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 887 AAATCGACTTCGTTCCTGACATTGGTGAAATAGAACCATTCAAGCCTTTTATGAATCGGT 946
Query 873 ATCATACGCCATATAAGGCATCAGGAAGTATCTCTCCATTGTGGTATTCCATCAAAAGGG 932
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATCATACGCCACATAAGGCATCAGGAAGTATCTCTCCATTGTGGTATTCCATCAAAAGGG 1006
Query 933 CGTCAGCTTATATTATTGTTATGTCATGCTATTCTTCTTATGGGAAATACACACCTCAAT 992
|||||||||||||||||||||||||||| || || |||||||||| ||||||||||||||
Sbjct 1007 CGTCAGCTTATATTATTGTTATGTCATGTTACTCATCTTATGGGATATACACACCTCAAT 1066
Query 993 ACAAATGGCTGGAAAAAGAGTTGCAAGGAGTGAATCGAACAGAGACGCCATGGCTTATCG 1052
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1067 ACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACAGAGACGCCATGGCTTATAG 1126
Query 1053 TCTTAGTACATTGCCCGTTTTACCA-TAGCTATGTGCATCATTACATGGAAGGTGAAACA 1111
||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1127 TCTTAGTGCATAGCCCGTTTTAC-AGTAGCTATGTGCATCATTACATGGAAGGTGAAACA 1185
Query 1112 TTGAGAGTCATGTACGAACAGTGGTTTGTCAAATACAAGGTTGATGTTGTGTTTGCAGGT 1171
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATGTTGTGTTTGCAGGT 1245
Query 1172 CATGTTCATGCCTATGAGAGATCGGAACGTGTTTCTAACATTGCTTACAACATTGTCAAT 1231
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1246 CATGTTCATGCCTATGAGAGATCGGAACGTGTTTCTAATATTGCTTACAACATTGTCAAT 1305
Query 1232 GGACTGTGTGAGCCAATACCGGATGAGTCAGCTCCTGTATACATCACAATCGGGGATGGA 1291
||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1306 GGATTGTGTGAGCCAATATCGGATGAGTCAGCTCCTATATACATCACAATCGGGGATGGC 1365
Query 1292 GGAAACTCGGAAGGCTTGGTTACTGACATGATGCAGCCACAACCCAAATACTCCGCTTTT 1351
|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1366 GGAAACTCGGAAGGCTTGCTTACCGACATGATGCAGCCACAACCAAAATACTCCGCGTTT 1425
Query 1352 CGAGAAGCTAGCTTTGGGCACGGGTTGCTAGAGATTAAAAACAGAACTCATGCTTACTTC 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 CGAGAAGCTAGCTTTGGGCACGGGTTGCTAGAGATTAAAAACAGAACTCATGCTTACTTC 1485
Query 1412 AGCTGGAATAGGAACCAAGATGGGAGCTCCATGGCAGCAGATTCTGTGTGGTTGCTTAAT 1471
||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1486 AGCTGGAATCGGAACCAAGATGGGAACGCCGTGGCAGCAGATTCTGTGTGGTTGCTTAAT 1545
Query 1472 CGGTTTTGGAGATCTCAAAAGAAGACATGGCTTGATGCATTTTAAACACAAACTGAACAA 1531
||||||||| || ||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 1546 CGGTTTTGGCGAGCTCAAAAGAAGACATGGCTTGATGCATTTTAAAGACAAATTGAAGAA 1605
Query 1532 GGTTGTATTTTTGCTGCAATTTCTAAA-GAAATAAATCAGTTTGTGATTGTTTTATAACG 1590
|||| ||||||||| |||||| ||||| ||| |||||||||| |||| ||||||| | |
Sbjct 1606 GGTTTTATTTTTGCAGCAATT-CTAAACGAA-TAAATCAGTTAGTGACTGTTTTACGAGG 1663
Query 1591 GTATTTTCATTGAAATTTGATCAAAACCTCCTC 1623
|| | || ||||| ||||||| |||||||||||
Sbjct 1664 GT-TGTT-ATTGAGATTTGATTAAAACCTCCTC 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5