BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490039
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12340.1 | Symbols: | copper ion binding | chr4:7321278-732... 1022 0.0
> AT4G12340.1 | Symbols: | copper ion binding | chr4:7321278-7322477
REVERSE LENGTH=832
Length=832
Score = 1022 bits (553), Expect = 0.0
Identities = 673/729 (92%), Gaps = 16/729 (2%)
Strand=Plus/Plus
Query 67 ATGGGCGATTTCTCGATTCAGATCAGTAATAAGCTGATCAATCAGCTAGCTGAAGGTAAC 126
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 106 ATGGGAGATTTCTCGATTCAGATCAGTTCTAAGCTGATCAATCAGCTAGCTGAAGGTAAC 165
Query 127 GAACAACCGAAGAGGAGGGCAAAGAAAACCAAACCCAAAGTCTCACCACAGAGCAAAGCA 186
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 166 GATCAACCAAAGAGGAGGGCAAAGAAAACCAAACCTAAAGTCTCACCACAGAGCAAA-CA 224
Query 187 GATCAAGCGAAAACACGCCTAAATGCAG-AGAAACCTAATCCAGTGGCTGAATTACCGAT 245
|| || | ||| || | | || | || |||||||||||||||||||||||||||||||
Sbjct 225 GA--AAAC-AAACCAAG-ATGAA-G-AGAAGAAACCTAATCCAGTGGCTGAATTACCGAT 278
Query 246 GCAGCCACCGTTTTTCTTCCCGATACCACCACAAGCAGCGGCAAGCACAGAGCTGGAATC 305
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 279 GCAGCCACCGTTTTTCTTCCCAATACCACCACAAGGAGCAGCAAGCACAGAGCTGGAATC 338
Query 306 GATAAAATCCGTTGTGAAAGAGAGTGAGAAAGTTCTTGAGAAGCTGGAGTTACAAGAGAA 365
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 339 GATAAAATCCGTTGTGAAAGAGAGTGAGAAGGTTCTTGAGAAGCTGGAGTTACAAGAGAA 398
Query 366 GAACATTGTTCATGAAGTGACAGAGAGAGCCAAGGATCTAAGGGAGAAAGAGTTCAAGAT 425
||||||||||| |||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 399 GAACATTGTTCGTGAAGTTACGGAGAGAGCCAAGGATCTGAGGGAGAAAGAGTTTAAGAT 458
Query 426 CCCGGAACCTAAACCAATGCCTTGTTCGTCATATCACGAAGCGTGGATGAAATGCTACAA 485
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 459 CCCGGAACCTAAACCAATGCCTTGTTCGTCAGATCACGAAGCCTGGATGAAATGCTACAA 518
Query 486 GGAGAACATCGGTGA-CCCACTGAAATGTAGCGGTTTCGTTAAGAGTTTCCAGGATTGCG 544
||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |
Sbjct 519 GGAGAACATCGGT-AGTCCGTTGAAATGTAGCGGTTTCGTTAAGAGTTTCCAGGATTGTG 577
Query 545 CACGCCGGTCCAGACAGCAAGTGAATCCTGAAGAAAAGTAGAGATAATAAGATTTAAAAA 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 578 CACGCCGGTCCAGACAGCAAGTGAATCCTGAAGAAAAGTAGAGATAATAAGATTCAAAAG 637
Query 605 GACTTTTT-GAGACACGAAGGGAAGAGTAGTTTTTGCTTTCTGAGATCATATGAGTGATA 663
|||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 638 GACTTTTTTGAGACACGAAGGGAA---TAGTTTTTGCTTTCTGAGATCATATGAATGACA 694
Query 664 CAGAAGAATTGAGATTGTTTCCTCTTAATTACATGAAAGCCaaaaagaaagaaaaaa--T 721
||||||||||| | ||||||||| || ||| ||||||||| |||||||||||||||| |
Sbjct 695 CAGAAGAATTGTGCTTGTTTCCTTTTGATTTCATGAAAGCAAAAAAGAAAGAAAAAAAAT 754
Query 722 AAGCAGAATCTGTGATTATATTCATGAGTTCAAACTTTCAAAACTGTGTTCTTGATTAAC 781
||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||||||
Sbjct 755 AAGCAGAATCTGTGATTATGTTCATGAGATAAAACTTTCAAAACTATGTTCTTGATTAAC 814
Query 782 TATTTTGGC 790
|||||||||
Sbjct 815 TATTTTGGC 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5