BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490040
Length=557
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12360.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 723 0.0
> AT4G12360.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7327992-7329192
REVERSE LENGTH=746
Length=746
Score = 723 bits (391), Expect = 0.0
Identities = 508/563 (90%), Gaps = 14/563 (2%)
Strand=Plus/Plus
Query 2 TGTGTATAT--ATACTAATTAATGAAGCACCTAAAACAAAAGAAAACGATCCTCCCACGA 59
||||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||
Sbjct 23 TGTGTATATACATACTAATTAAGGAAGCATCAAAAACAAAAGAAAACGATTCTCCCACGA 82
Query 60 TTAAGATAATGGCTCAAACCACCACCGTGATCTTCCTCCTAGCCACATTGCTGA-TGGCA 118
|| | ||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||
Sbjct 83 TT-A-ATAATGGCTCAAACCACCACCTTGATCTTACTCCTAGCCACATTGCT-AGTGGCA 139
Query 119 GCTATGACTGTATCAGGACACGGACCACATCTTCCACTGGCTCCTAGTCCTTCAGTCAAC 178
|||| |||||| |||||||| ||||| ||| |||| ||||||||||||||||||||||||
Sbjct 140 GCTACGACTGTTTCAGGACAGGGACCTCATATTCCGCTGGCTCCTAGTCCTTCAGTCAAC 199
Query 179 GAAGTTATGAACTGTGCGGCTGGTTTGGCTGTTTGTCTTCCGGCAATTACTCAGGGAGGA 238
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 200 GAAGCTATGAACTGTGCGGCTGGTTTGGCTGTTTGTCTTCCGGCAATTACTCAGCGAGGA 259
Query 239 CCTCCGACGCCAG-AATGCTGCACCGCCTTAGAGACCGCGGTTAA-AACTCAGCTACCTT 296
|||||| ||| || |||||||||| ||| ||||||| ||| || | |||||||||| |||
Sbjct 260 CCTCCGTCGC-AGGAATGCTGCACAGCCGTAGAGACGGCG-TTGACAACTCAGCTATCTT 317
Query 297 GTCTTTGCGGACTT-ATCAAAAGCCCAACGTTGTTGATCCCTTTCAATGTCACCG-CTTT 354
|||||||||| || |||||||| |||| |||||||||||||||||||||||||| |||
Sbjct 318 GTCTTTGCGGT-TTCATCAAAAGTCCAATGTTGTTGATCCCTTTCAATGTCACCGACTT- 375
Query 355 CAATGCTCTTCTCTCCCAAACTTGTGGACTCACCGCCGATCCCAACATGTGTTCCGAAAT 414
|||||||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 376 CAATGCTCTTTTCTCCAAAACTTGTGGACTCACCACTGATCCCAACTTGTGTTCCGAAAC 435
Query 415 TGTAGCCCAAGCTCCTTTGCCGCAGACGGCAGCACCTGTTCCAGGACCACCCAAATCTGA 474
|| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 436 TGCCGCCCAGGCTCCTTTGCCGAAGACGGCAGCACCTGTTCCAGGAGCACCCAAATCTGA 495
Query 475 CAAGAATGCTGCAAGCAAACTCGCGGGAACAGGCTTGGTCGGCGTCGTCTTGATCACGAT 534
|||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 496 CAAGGATGCCGCAAGCAAACTCGCGGGAACAGGCTTGGTCGGAATCGTCGTGATCACGAT 555
Query 535 CGCTGCGATGTTTTATTGAAATT 557
|||||||||||||||| |||||
Sbjct 556 TGCTGCGATGTTTTATTAAAATT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724566204
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5