BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490041
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1201 0.0
> AT4G12370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G00893.1);
Has 118 Blast hits to 113 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7331972-7332874
FORWARD LENGTH=903
Length=903
Score = 1201 bits (650), Expect = 0.0
Identities = 823/907 (91%), Gaps = 10/907 (1%)
Strand=Plus/Plus
Query 1 ATGTACTTACCTAAACGTGGCAACTTGTTCGAACTCTACGATCCATTGCAGCAGAAGTTG 60
||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| ||
Sbjct 1 ATGTACTTACCAAAACGTGGCAATTTGTTCGAACTCTATGATCCATTGCATCAGAAGATG 60
Query 61 TACACATTGAATCTACCCGAGCTTGCCAAATCTACGGTTTGTTACTCAAGAGACGGATGG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TACACATTGAATCTACCTGAGCTTGCCAAATCTACGGTTTGTTACTCAAGAGATGGATGG 120
Query 121 TTACTAATGCGCAAAACCATTTCAAGCGAAATGTTCTTCTTCAACCCGTTTACTCGTAAG 180
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 121 TTACTAATGCGTAAAACCATTTCAAGAGAAATGTTCTTCTTCAACCCGTTTACTCGTGAG 180
Query 181 CTCATTAACTTACCAAAGTGTGCGTTATCTTATGATGCCATCGCTTTCTCTTGTGCACCT 240
||||| ||| ||||||| ||| | ||||| |||||||| |||||||||||||||||||||
Sbjct 181 CTCATAAACGTACCAAAATGTACTTTATCATATGATGCGATCGCTTTCTCTTGTGCACCT 240
Query 241 ACATCAGGTACTTGCGTGTTGCTAGCGTTTAAGCATGTTGCCTATGGTATCACCGCTACG 300
|||||||||||||||||||||||||| |||||||||||| | ||| |||||||| |||||
Sbjct 241 ACATCAGGTACTTGCGTGTTGCTAGCATTTAAGCATGTTTCGTATCGTATCACCACTACG 300
Query 301 AGCACTTGCCATCCCGAAGCAACCGAGTGGGTTACTGAGGATTTACATTTCCATCTTCAT 360
||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 301 AGCACTTGCCATCCCAAAGCAACCGAGTGGGTTACTGAGGATCTACAATTCCATCGTCGC 360
Query 361 TTTGGCAGCGATACACTAAAACACAGCAATGTTGTCTATGCGAAACGTCACTTCTATTGC 420
|| |||| || ||||| || |||||||||||||||||||| ||||||| ||||||||||
Sbjct 361 TTCCGCAGTGAAACACTTAACCACAGCAATGTTGTCTATGCCAAACGTCGCTTCTATTGC 420
Query 421 CTTGACGGTCAAGGACGCTTATATTACTTTGATCCCTCTTCTCGA-GAATGGCATTTTAT 479
||||||||||||||| ||||||||||||||||||| ||||||||| || ||| ||||||
Sbjct 421 CTTGACGGTCAAGGAAGCTTATATTACTTTGATCCGTCTTCTCGAAGA-TGGGATTTTAG 479
Query 480 TTATGAG-TATA-ATCAGCCATGTCCTTATATCTCGGGTAGACTTAGTTACC-GATATGA 536
||| | ||| | | |||||||||||||||||||| |||| ||||||||| | |||||
Sbjct 480 TTAC-ACCTATTTA-CTGCCATGTCCTTATATCTCGGATAGATTTAGTTACCAG-TATGA 536
Query 537 GCGGAAGAAGAAGAGAATTTTATTGGCTGTGCGGAAAGGAGTGTTCTTTAAGATATATAC 596
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 537 GCGGAAGAAGAAGAGAATTTTCTTGGCTGTGCGGAAAGGAGTGTTCTTTAAGATATTTAC 596
Query 597 ATGCGGTGGTGAGAAGCCGATTGTGTATAAATTAGAAGACGA-CAAATGGGAGGAGATCA 655
||| | ||||||||||||||| ||| |||| |||||||| | ||| |||||||||||||
Sbjct 597 ATGTGATGGTGAGAAGCCGATAGTGCATAAGTTAGAAGAT-ATCAATTGGGAGGAGATCA 655
Query 656 ATAGTACTATGCTTGATGGCTTGACAATCTTTACGGGGCTTCATTCCTCTGAGATGAGAG 715
||||||||| | ||||||| ||||||||||||||||| ||| ||||||||||| |||||
Sbjct 656 ATAGTACTACGATTGATGGATTGACAATCTTTACGGGTCTTTATTCCTCTGAGGTGAGAC 715
Query 716 TTAATCTCCCATGGATGAGGAATAGTGTTTACTTCCCGAGGCTTCGTTTTAAAGTCAAGC 775
||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||
Sbjct 716 TTAATCTACCATGGATGAGGAATAGTGTTTACTTTCCTAGACTTCGTTTTAATGTCAAGC 775
Query 776 GTTGTGTATCATATTCATTTGATGAAGAGAGGTATTATCCGCGTAAGCAGTGGCAAGAAC 835
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 776 GTTGTGTATCATATTCGCTTGATGAAGAGAGGTATTATCCGCGGAAGCAGTGGCAAGAAC 835
Query 836 AGGAGGATTTATGTCCTCTTGAGAATCTTTGGATTAGGCCACCGAAGAAAGCTTTAGACT 895
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 836 AGGAGGATTTATGTCCTATTGAGAATCTTTGGATTAGGCCACCGAAGAAAGCTGTAGATT 895
Query 896 ACATGTG 902
||||||
Sbjct 896 TCATGTG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44055346919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5