BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490042 Length=714 Score E Sequences producing significant alignments: (Bits) Value AT4G12390.1 | Symbols: PME1 | pectin methylesterase inhibitor 1... 1027 0.0 > AT4G12390.1 | Symbols: PME1 | pectin methylesterase inhibitor 1 | chr4:7336497-7337356 FORWARD LENGTH=860 Length=860 Score = 1027 bits (556), Expect = 0.0 Identities = 649/692 (94%), Gaps = 13/692 (2%) Strand=Plus/Plus Query 28 ACACACACACCAATGGAACCAAAGCTAACCCATCTTTGCTATTGCCTTCTACTTTTTCTT 87 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 45 ACACACACACCAATGGAACCAAAGCTAACCCATCTTTGTTATTGCCTTCTACTTTTTCTT 104 Query 88 CCACTACTCTCCCAATCCACCATAGCCAAACCTTCATCATCACCAAACCCTAGCAATAAC 147 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 105 CCACTACTCTGCCAATCCACCATAGCCAAACCTTCATCATCACCAAACCCTAGCAG---C 161 Query 148 AGCATCAACTTCATTGTCTCATCATGCCGTGTCACGCGTTACCAAACTCTCTGCGTCAAA 207 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 162 AGCATCAACTTCATTGTCTCATCATGCCGCGTCACGCGTTACCAAACTCTCTGCGTCAAA 221 Query 208 TGCCTCGCCACTTTCGCCA-ACAAAATCCGCCGCAACGAAAACCGGTTAACTCAAACCGC 266 ||||| ||| |||| || | |||||||||||||||||||||||| |||| |||||||||| Sbjct 222 TGCCTTGCCGCTTTTGC-AGACAAAATCCGCCGCAACGAAAACCAGTTAGCTCAAACCGC 280 Query 267 TTTAGCCGTTACTCTAGTCCGGGTCCAGTCCACGACGGTCTACGTAGCCAAGCTGACTAA 326 |||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||| Sbjct 281 TTTAGCCGTTACTCTAGTCCGGGTTCAGTCCACGACAATCTATGTAGGGAAGCTGACTAA 340 Query 327 AGCTCGGAGAATCAAACGGAGAGAGTACTTAGCCGTGAAGGATTGTGTTGAGAATCTTGG 386 |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 341 AGCTAGGAGAATCAAAAGGAGAGAGTACTTAGCCGTGAAGGATTGTGTTGAAAATCTTGG 400 Query 387 AGACGGTTTAGAGATGTTGGCTCAGTCGATGAGGGAGTTGA-GACAAGTTGGTGGATCTG 445 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| Sbjct 401 AGACGGTTTAGAGATGTTGGCTCAGTCGATGAGGGAGTTGAAG-CAAGTTGGTCGATCTG 459 Query 446 GTCGTGATCGAGACGAGTTCTTGTGGAGGCTAAGTAACGTTGAGACATGGGTTAGTGCTG 505 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 460 GTCGTGATCGAGACGAGTTCTTGTGGAGACTAAGTAACGTTGAGACTTGGGTTAGTGCTG 519 Query 506 CCTTAACGGATGAGACAACGTGTCTTGATGGGTTCGATGGAAAGGTTATGGACGGTGTGG 565 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 520 CCTTAACGGATGAGACAACGTGTCTGGATGGGTTCGATGGAAAGGTTATGGACGGTGTGG 579 Query 566 TGAAATCGGCGATAAGAAGACGAGTGGTTCATGTGGCTCGAGTTACTAGTAATGCTTTGG 625 | ||||| ||||| |||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 580 TAAAATCAGCGATTAGAAGAAGAGTGGTTCATGTGGCTCGAGTTACTAGTAATGCATTGG 639 Query 626 CTCTTGTAAACCGGTTCGCGGCTCGGCATAAGTCATAG--T-TTCGGGTAATAAATTAAA 682 ||||||||||||||||||||||| |||||||||||||| | ||||| |||||||||||| Sbjct 640 CTCTTGTAAACCGGTTCGCGGCTAGGCATAAGTCATAGAATATTCGGCTAATAAATTAAA 699 Query 683 ATTCGGTCCTAATTAATTAGGTTTTGTCATGT 714 |||||||||| | ||| |||||||||||||| Sbjct 700 ATTCGGTCCT--T-AATAAGGTTTTGTCATGT 728 Score = 52.8 bits (28), Expect = 4e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1 ATGCCTTTTAATTGAAACGCACCACAAA 28 |||||||||||||||||||||||||||| Sbjct 1 ATGCCTTTTAATTGAAACGCACCACAAA 28 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34611327283 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5