BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490042
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12390.1 | Symbols: PME1 | pectin methylesterase inhibitor 1... 1027 0.0
> AT4G12390.1 | Symbols: PME1 | pectin methylesterase inhibitor
1 | chr4:7336497-7337356 FORWARD LENGTH=860
Length=860
Score = 1027 bits (556), Expect = 0.0
Identities = 649/692 (94%), Gaps = 13/692 (2%)
Strand=Plus/Plus
Query 28 ACACACACACCAATGGAACCAAAGCTAACCCATCTTTGCTATTGCCTTCTACTTTTTCTT 87
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 45 ACACACACACCAATGGAACCAAAGCTAACCCATCTTTGTTATTGCCTTCTACTTTTTCTT 104
Query 88 CCACTACTCTCCCAATCCACCATAGCCAAACCTTCATCATCACCAAACCCTAGCAATAAC 147
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 105 CCACTACTCTGCCAATCCACCATAGCCAAACCTTCATCATCACCAAACCCTAGCAG---C 161
Query 148 AGCATCAACTTCATTGTCTCATCATGCCGTGTCACGCGTTACCAAACTCTCTGCGTCAAA 207
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 162 AGCATCAACTTCATTGTCTCATCATGCCGCGTCACGCGTTACCAAACTCTCTGCGTCAAA 221
Query 208 TGCCTCGCCACTTTCGCCA-ACAAAATCCGCCGCAACGAAAACCGGTTAACTCAAACCGC 266
||||| ||| |||| || | |||||||||||||||||||||||| |||| ||||||||||
Sbjct 222 TGCCTTGCCGCTTTTGC-AGACAAAATCCGCCGCAACGAAAACCAGTTAGCTCAAACCGC 280
Query 267 TTTAGCCGTTACTCTAGTCCGGGTCCAGTCCACGACGGTCTACGTAGCCAAGCTGACTAA 326
|||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||
Sbjct 281 TTTAGCCGTTACTCTAGTCCGGGTTCAGTCCACGACAATCTATGTAGGGAAGCTGACTAA 340
Query 327 AGCTCGGAGAATCAAACGGAGAGAGTACTTAGCCGTGAAGGATTGTGTTGAGAATCTTGG 386
|||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 341 AGCTAGGAGAATCAAAAGGAGAGAGTACTTAGCCGTGAAGGATTGTGTTGAAAATCTTGG 400
Query 387 AGACGGTTTAGAGATGTTGGCTCAGTCGATGAGGGAGTTGA-GACAAGTTGGTGGATCTG 445
||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 401 AGACGGTTTAGAGATGTTGGCTCAGTCGATGAGGGAGTTGAAG-CAAGTTGGTCGATCTG 459
Query 446 GTCGTGATCGAGACGAGTTCTTGTGGAGGCTAAGTAACGTTGAGACATGGGTTAGTGCTG 505
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 460 GTCGTGATCGAGACGAGTTCTTGTGGAGACTAAGTAACGTTGAGACTTGGGTTAGTGCTG 519
Query 506 CCTTAACGGATGAGACAACGTGTCTTGATGGGTTCGATGGAAAGGTTATGGACGGTGTGG 565
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 520 CCTTAACGGATGAGACAACGTGTCTGGATGGGTTCGATGGAAAGGTTATGGACGGTGTGG 579
Query 566 TGAAATCGGCGATAAGAAGACGAGTGGTTCATGTGGCTCGAGTTACTAGTAATGCTTTGG 625
| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 580 TAAAATCAGCGATTAGAAGAAGAGTGGTTCATGTGGCTCGAGTTACTAGTAATGCATTGG 639
Query 626 CTCTTGTAAACCGGTTCGCGGCTCGGCATAAGTCATAG--T-TTCGGGTAATAAATTAAA 682
||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||
Sbjct 640 CTCTTGTAAACCGGTTCGCGGCTAGGCATAAGTCATAGAATATTCGGCTAATAAATTAAA 699
Query 683 ATTCGGTCCTAATTAATTAGGTTTTGTCATGT 714
|||||||||| | ||| ||||||||||||||
Sbjct 700 ATTCGGTCCT--T-AATAAGGTTTTGTCATGT 728
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 ATGCCTTTTAATTGAAACGCACCACAAA 28
||||||||||||||||||||||||||||
Sbjct 1 ATGCCTTTTAATTGAAACGCACCACAAA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5