BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490049 Length=923 Score E Sequences producing significant alignments: (Bits) Value AT4G12450.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1210 0.0 > AT4G12450.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22560.1); Has 380 Blast hits to 380 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 374; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr4:7385802-7386810 REVERSE LENGTH=1009 Length=1009 Score = 1210 bits (655), Expect = 0.0 Identities = 796/864 (92%), Gaps = 10/864 (1%) Strand=Plus/Plus Query 65 AAATATGCCAATCGGGTGGGTCAAATCCTTACATTGCAAATCAAGAGCATTCGACGATGT 124 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 133 AAATATGCCGATCGGGTGGGTCAAATCCTTACATTGCAAATCAAAAGCATTCGACGATGT 192 Query 125 TTATCATCATCACTCCAACAACGGTAAACTCTTATTGCCAAGTTACAGCTGCAGAAAAAA 184 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 193 CTATCATCATCACTCCAACAAAGGTAAACTCTTATTGCCAAGTTACAGCTGCAGAAAAAA 252 Query 185 CGTTAGAGACGTCGTTGATA-ACCGACCCGGAACCGTTaa-aaaaaGCCCAAAACCCGAC 242 |||||||||||| || ||| || ||||||||||||||| ||||| ||||||||| ||| Sbjct 253 CGTTAGAGACGTTGTCAATACACA-ACCCGGAACCGTTAAGAAAAA-CCCAAAACCGGAC 310 Query 243 CCG-GCTTTACGACGTTTACGCTCTTCTAGTCGACCCGAATCAGAATCCAATTCTCATCA 301 ||| | |||| |||||||| |||||||| |||||||||||| ||| |||||||||||||| Sbjct 311 CCGAG-TTTAAGACGTTTATGCTCTTCTCGTCGACCCGAATTAGACTCCAATTCTCATCA 369 Query 302 CCCGGCCCGAAGAAGCGTATCAGCTCGAGCTTCCTCTGAATCAACATTGCCCGTATTGAC 361 |||| ||||| |||| |||||||||||||||||||| ||||| ||||||||||||||| Sbjct 370 CCCGACCCGACGAAGTGTATCAGCTCGAGCTTCCTCGGAATCTGTATTGCCCGTATTGAC 429 Query 362 CGATCTTCCCGACGGTCATCCGTCGAGAAACGTCGTGGAGATTATATTCCAATCTAGTTG 421 ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 430 CGATCTTCCTGATGGTCATCCGTCAAGAAACGTCGTGGAGATTATATTCCAATCTAGTTG 489 Query 422 GAGCTCCGACGAGTTTCCGGGTCGGGTAGAAATGATCTTTAAAGTCGAAAACGGGTCAAA 481 ||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct 490 GAGCTCCGATGAGTTTCCGGGTCGGGTTGAAATGATTTTTAAAGTTGAAAACGGGTCAAA 549 Query 482 AGCTGTGACCCGGTTTGAGGAATATAGAGAAGATGTGAAATCGCGATGGCGCACGAAATT 541 |||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| | Sbjct 550 AGCTGTGACCCGGTTTGAGGAATATAGAGAAGCTGTGAAATCGCGATCGTGTTCGAAAGT 609 Query 542 TGATTCCGAT-GAGGTTAACGGCGGCGCGTGTGATGAAGACGCGCGGTGTTCGGCTGATG 600 |||||| ||| ||| || ||||| |||||||||||||| |||||||||| || ||||||| Sbjct 610 TGATTCTGATAGAG-TTGACGGCAGCGCGTGTGATGAAAACGCGCGGTGCTCCGCTGATG 668 Query 601 GGAATGAGATGATGAGGTTTTTTCCTTTGGGTCCTATTCCGGGAGGGATTAACGGCGGCG 660 ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct 669 GGAATGAGATGATGAGGTTTTTTCCGTTGGGTCCGATTCCGGGAGGGATAAACGGCGGCG 728 Query 661 CGTGGGGTTT-CCCTGGTGGTAAAGGAGCGGCGGTTTGTACATTTTCGGGTAGCGGTGAA 719 |||||||||| ||| || || |||||||||||||||||||| ||||| |||||||| ||| Sbjct 729 CGTGGGGTTTTCCC-GGAGGGAAAGGAGCGGCGGTTTGTACGTTTTCCGGTAGCGGAGAA 787 Query 720 GCGCATGCGAGCACAGGCGGCGGAGGAGGGAGGAGAGCGATGTTGATTTGTAGAGTAATT 779 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 788 GCGCACGCGAGCACTGGCGGCGGAGGAGGGAGGAGAGCGATGTTGATTTGTAGAGTGATT 847 Query 780 GCGGGTCGGGTTGCGAAGAAAGGTGAATTCGGGTCGGATTCAGTAGCGGGTCGAGCTGGT 839 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 848 GCGGGTCGGGTTGCGAAGAAAGGTGAATTCGGGTCGGATTCGGTAGCGGGTCGAGCTGGT 907 Query 840 GAGTTGATTGTCTTCGATGCACGCGCCGTGTTGCCTTGTTTCTTAATATTTTTCAGATTG 899 |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct 908 GAGTTGATTGTCTTTGATGCTCGCGCGGTGTTGCCTTGTTTCTTAATCTTTTTCAGATTG 967 Query 900 TAAAAAATTATTATTATTATAAAA 923 |||||||| || |||||||||||| Sbjct 968 TAAAAAATAATAATTATTATAAAA 991 Score = 78.7 bits (42), Expect = 9e-14 Identities = 62/70 (89%), Gaps = 7/70 (10%) Strand=Plus/Plus Query 3 TACACCAAAAACTTCAAAGCCCCCACAAATCTCTAAACA-A--ACT---TT-AAATTTCT 55 ||||||||||||||||||||||||||||||||||||||| | || || |||||||| Sbjct 30 TACACCAAAAACTTCAAAGCCCCCACAAATCTCTAAACATATCACAAACTTCAAATTTCT 89 Query 56 AAAGACACAA 65 |||||||||| Sbjct 90 AAAGACACAA 99 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45110264006 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5