BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490049
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12450.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1210 0.0
> AT4G12450.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G22560.1);
Has 380 Blast hits to 380 proteins in 23 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 374; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr4:7385802-7386810
REVERSE LENGTH=1009
Length=1009
Score = 1210 bits (655), Expect = 0.0
Identities = 796/864 (92%), Gaps = 10/864 (1%)
Strand=Plus/Plus
Query 65 AAATATGCCAATCGGGTGGGTCAAATCCTTACATTGCAAATCAAGAGCATTCGACGATGT 124
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 133 AAATATGCCGATCGGGTGGGTCAAATCCTTACATTGCAAATCAAAAGCATTCGACGATGT 192
Query 125 TTATCATCATCACTCCAACAACGGTAAACTCTTATTGCCAAGTTACAGCTGCAGAAAAAA 184
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 193 CTATCATCATCACTCCAACAAAGGTAAACTCTTATTGCCAAGTTACAGCTGCAGAAAAAA 252
Query 185 CGTTAGAGACGTCGTTGATA-ACCGACCCGGAACCGTTaa-aaaaaGCCCAAAACCCGAC 242
|||||||||||| || ||| || ||||||||||||||| ||||| ||||||||| |||
Sbjct 253 CGTTAGAGACGTTGTCAATACACA-ACCCGGAACCGTTAAGAAAAA-CCCAAAACCGGAC 310
Query 243 CCG-GCTTTACGACGTTTACGCTCTTCTAGTCGACCCGAATCAGAATCCAATTCTCATCA 301
||| | |||| |||||||| |||||||| |||||||||||| ||| ||||||||||||||
Sbjct 311 CCGAG-TTTAAGACGTTTATGCTCTTCTCGTCGACCCGAATTAGACTCCAATTCTCATCA 369
Query 302 CCCGGCCCGAAGAAGCGTATCAGCTCGAGCTTCCTCTGAATCAACATTGCCCGTATTGAC 361
|||| ||||| |||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 370 CCCGACCCGACGAAGTGTATCAGCTCGAGCTTCCTCGGAATCTGTATTGCCCGTATTGAC 429
Query 362 CGATCTTCCCGACGGTCATCCGTCGAGAAACGTCGTGGAGATTATATTCCAATCTAGTTG 421
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 430 CGATCTTCCTGATGGTCATCCGTCAAGAAACGTCGTGGAGATTATATTCCAATCTAGTTG 489
Query 422 GAGCTCCGACGAGTTTCCGGGTCGGGTAGAAATGATCTTTAAAGTCGAAAACGGGTCAAA 481
||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 490 GAGCTCCGATGAGTTTCCGGGTCGGGTTGAAATGATTTTTAAAGTTGAAAACGGGTCAAA 549
Query 482 AGCTGTGACCCGGTTTGAGGAATATAGAGAAGATGTGAAATCGCGATGGCGCACGAAATT 541
|||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| |
Sbjct 550 AGCTGTGACCCGGTTTGAGGAATATAGAGAAGCTGTGAAATCGCGATCGTGTTCGAAAGT 609
Query 542 TGATTCCGAT-GAGGTTAACGGCGGCGCGTGTGATGAAGACGCGCGGTGTTCGGCTGATG 600
|||||| ||| ||| || ||||| |||||||||||||| |||||||||| || |||||||
Sbjct 610 TGATTCTGATAGAG-TTGACGGCAGCGCGTGTGATGAAAACGCGCGGTGCTCCGCTGATG 668
Query 601 GGAATGAGATGATGAGGTTTTTTCCTTTGGGTCCTATTCCGGGAGGGATTAACGGCGGCG 660
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 669 GGAATGAGATGATGAGGTTTTTTCCGTTGGGTCCGATTCCGGGAGGGATAAACGGCGGCG 728
Query 661 CGTGGGGTTT-CCCTGGTGGTAAAGGAGCGGCGGTTTGTACATTTTCGGGTAGCGGTGAA 719
|||||||||| ||| || || |||||||||||||||||||| ||||| |||||||| |||
Sbjct 729 CGTGGGGTTTTCCC-GGAGGGAAAGGAGCGGCGGTTTGTACGTTTTCCGGTAGCGGAGAA 787
Query 720 GCGCATGCGAGCACAGGCGGCGGAGGAGGGAGGAGAGCGATGTTGATTTGTAGAGTAATT 779
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 788 GCGCACGCGAGCACTGGCGGCGGAGGAGGGAGGAGAGCGATGTTGATTTGTAGAGTGATT 847
Query 780 GCGGGTCGGGTTGCGAAGAAAGGTGAATTCGGGTCGGATTCAGTAGCGGGTCGAGCTGGT 839
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 848 GCGGGTCGGGTTGCGAAGAAAGGTGAATTCGGGTCGGATTCGGTAGCGGGTCGAGCTGGT 907
Query 840 GAGTTGATTGTCTTCGATGCACGCGCCGTGTTGCCTTGTTTCTTAATATTTTTCAGATTG 899
|||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 908 GAGTTGATTGTCTTTGATGCTCGCGCGGTGTTGCCTTGTTTCTTAATCTTTTTCAGATTG 967
Query 900 TAAAAAATTATTATTATTATAAAA 923
|||||||| || ||||||||||||
Sbjct 968 TAAAAAATAATAATTATTATAAAA 991
Score = 78.7 bits (42), Expect = 9e-14
Identities = 62/70 (89%), Gaps = 7/70 (10%)
Strand=Plus/Plus
Query 3 TACACCAAAAACTTCAAAGCCCCCACAAATCTCTAAACA-A--ACT---TT-AAATTTCT 55
||||||||||||||||||||||||||||||||||||||| | || || ||||||||
Sbjct 30 TACACCAAAAACTTCAAAGCCCCCACAAATCTCTAAACATATCACAAACTTCAAATTTCT 89
Query 56 AAAGACACAA 65
||||||||||
Sbjct 90 AAAGACACAA 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45110264006
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5