BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg490050 Length=2548 Score E Sequences producing significant alignments: (Bits) Value AT4G12460.1 | Symbols: ORP2B | OSBP(oxysterol binding protein)-... 3077 0.0 > AT4G12460.1 | Symbols: ORP2B | OSBP(oxysterol binding protein)-related protein 2B | chr4:7391277-7396509 FORWARD LENGTH=2658 Length=2658 Score = 3077 bits (1666), Expect = 0.0 Identities = 1947/2081 (94%), Gaps = 25/2081 (1%) Strand=Plus/Plus Query 487 GCAT-GTTCCTCTCCAGTCAATCAGTGGGGA-GTCTCCTTCGTATCACCAAAGGATTTAT 544 |||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||||| Sbjct 584 GCATAGTTCCTCTCCAGTCAATTAATGGGGATTTCTCCTTCGTATCACCAAAGGATTTAT 643 Query 545 TCATATCTACAGAGAGACTAAAGAAACGGTTGCTTGAAGAGGGAATGAACGAGAGTCTTG 604 ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 644 CCATATCTACCGAGAGACTAAAGAAACGGTTGTTTGAAGAGGGAATGAACGAGAGTCTTG 703 Query 605 TAACAGAGTGTGAACAGATCGTGGATTCAGAGTTCTCTGAAGCTCAAGAACAGATTAAAC 664 ||| |||||| || |||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 704 TAAAAGAGTGCGAGCAGATCGTGGATTCAGAGTTCTGTGAAGTTCAAGAACAGATTAAAC 763 Query 665 TTCTCCATGAAGAACGGACAAAGTTGCTTGATGCATTGAGGCAGCTAGAGATGGCCAACC 724 |||| || ||||| |||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 764 TTCTTCACGAAGAGCGGAAAAAGTTGCTTGATGCTTTGAGGCAGCTAGAGATGGCCAACC 823 Query 725 TTGAAGCTGAAACCTCAGGGATCCATGACAATGTCTACCAATTAAGAAATCATAAGTATT 784 ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 824 TTGAAGCTGAAGCCTCAGGGATCCATGACGATGTCTACCAATTAAGAAATCACAAGTATT 883 Query 785 CCAGCTTAGGACGTGGAAAATATAGTGAATGCAGTACAAGTGCTTCATCTGCTGATAAGC 844 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 884 CCAGCTTAGGACGTGGAAAATATAGTGAATGCAGTACAAGTGCTTCATCTGATGATAAGC 943 Query 845 AAGAGTTTGAGGATATCTCTGAGGAAGATGAGGCTTCTTTCCATGACACAAAGGAGTCAT 904 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 944 AAGAGTTTGAGGATATCTCTGAGGAAGACGAGGCTTCCTTCCATGACACAAAGGAGTCAT 1003 Query 905 TTAGTGAACCTGATGTTGGTTCTGTG-TACACACATTTCAAGAGACGAACAAAGCTTCCT 963 || ||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||| Sbjct 1004 TTGGTGAACCTGATGTTGGTTCTGTGCT-CACGCATTTTAAGAGACGAACAAAGCTTCCT 1062 Query 964 GATCCAGCAGAGAAAGAGAGAGGTGTCAGTCTCTGGTCTATGATCAAAGATAATGTTGGA 1023 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1063 GATCCAGCAGAGAAAGAGAGAGGTGTCAGTCTCTGGTCTATGATCAAAGACAATGTTGGA 1122 Query 1024 AAGGATCTCACACGAGTTTGTCTTCCTGTTTATTTCAATGAACCAATATCTTCCCTCCAA 1083 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1123 AAGGATCTCACACGAGTTTGTCTTCCTGTTTATTTCAATGAACCAATATCTTCCCTCCAA 1182 Query 1084 AAGTGTTTTGAAGACTTGGAGTACTCTTATCTCTTGGACCAAGCATATGAATGCGGAAAA 1143 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1183 AAGTGTTTTGAAGACTTGGAGTACTCTTATCTCTTGGACCAAGCATATGAATACGGAAAA 1242 Query 1144 TCCGGGAACAGTCTCCTTAGAGCCCTGAATGTCGCTGCTTTTGCGGTCTCTGGTTATGCT 1203 |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1243 TCCGGGAAGAGTCTCCTTAGAGCCCTCAATGTCGCTGCTTTTGCAGTCTCTGGTTATGCT 1302 Query 1204 TCCACCGAAGGACGACACTGTAAACCTTTCAACCCTTTACTTGGAGAAACTTATGAAGCT 1263 |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 1303 TCCACCGAAGGACGACACTGTAAACCTTTCAACCCTTTGCTCGGAGAAACATATGAAGCT 1362 Query 1264 GACTTTCCTGAAAAGGGAATTCGTTTCTTCTCTGAGAAGGTTAGCCACCATCCAACAGTT 1323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1363 GACTTTCCTGAAAAGGGAATTCGTTTCTTCTCTGAGAAGGTTAGCCACCATCCAACAGTT 1422 Query 1324 ATCGCCTGCCATTGTAAAGGTAAAGGGTGGAAGTTCTGGGGCGACACAAACCTCAGGTCG 1383 |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1423 ATCGCCTGCCATTGCGAAGGTAAAGGGTGGAAGTTCTGGGGCGACACAAACCTCCGGTCG 1482 Query 1384 AAGTTTTGGGGGAGATCGATCCAACTTGAACCCGTTGGAATCTTGACTCTCGAGTTTGAT 1443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1483 AAGTTTTGGGGGAGATCGATCCAACTTGAACCCGTTGGAATCTTGACTCTCGAGTTTGAT 1542 Query 1444 GATGGAGAAATTTTCCAGTGGAGCAAAGTAACAACAACTATATACAATATCCTACTTGGT 1503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1543 GATGGAGAAATTTTCCAGTGGAGCAAAGTAACAACAACTATATACAATATCCTACTTGGT 1602 Query 1504 AAACTGTACTGCGATCACCATGGGATAATGCAAATCCGTGGAAATTGCCAATATTCTTGT 1563 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1603 AAACTGTACTGCGATCACCATGGGATAATGAAAATCCGTGGAAATCGCCAATATTCTTGT 1662 Query 1564 ACT-TTAAAGTTCAAGGAGCAATCGATTCTTGATAGAAATCCCCACCAGGTTAATGGTTT 1622 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1663 A-TGTTAAAGTTCAAGGAGCAATCGATTCTTGATAGAAATCCCCACCAGGTTAATGGTTT 1721 Query 1623 TGTAGAAGATGTAACTGGGAAAAAGGCCGCAACGGTATTTGGTAAATGGAATGATAGTCT 1682 |||||||||||||||||| |||||||| || |||||||||||||||||||||||||| || Sbjct 1722 TGTAGAAGATGTAACTGGAAAAAAGGCTGCGACGGTATTTGGTAAATGGAATGATAGCCT 1781 Query 1683 TTACTATGTTGCTGGTGATGGACTCAACAAGGCAAGCGCCTCATTACTGTGGAAAGCGAC 1742 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1782 TTATTATGTTGCTGGTGATGGAATCAACAAGGCAAGCGCCTCATTACTGTGGAAAGCGAC 1841 Query 1743 TAAGCCACCACCTAATGTCACTAGATACAACTTAACATCATTCGCGATGACGCTAAATGA 1802 ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1842 AAAGGCACCACCTAATGTCACCAGATACAACTTTACATCATTCGCGATGACGCTAAATGA 1901 Query 1803 ATTGACACCTGGTTTGGAGGAAAAGTTGCCTCCAACAGATTCTAGGCTCCGACCAGATCA 1862 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1902 ATTGATACCTGGTTTGGAGGAAAAGCTGCCTCCAACAGATTCTAGGCTCCGACCAGATCA 1961 Query 1863 ACGGCACTTGGAGAACGGTGAATATGAGAAGGCAAATGAAGAGAAACAACGATTAGAGAG 1922 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1962 ACGACACTTGGAGAACGGTGAATATGAGAAGGCAAATGAAGAGAAACAAAGATTAGAGAG 2021 Query 1923 AAGACAAAGAATGTCACGGCAAATTCAGGAAAGCGGGTGGAGACCGAGATGGTTCGAGCC 1982 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2022 AAGACAAAGAATGTCACGGCAAATTCAGGAAAGTGGGTGGAGACCGAGATGGTTCGAGCC 2081 Query 1983 ACAAGGAGAGAGTGAAAGCTATAAGTACACGGGCGGTTATTGGGAAGCACGAGATGATAA 2042 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 2082 TCAAGGAGAGAGTGAAAGCTATAAGTATACGGGCGGTTATTGGGAAGCACGAGATGTTAA 2141 Query 2043 AAGTTGGGATGATTGCCCTAACATATTTGGAGAGTTCACCGAGGAGGTTGCAGATTGTGC 2102 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2142 AAGTTGGGATGATTGCCCTAACATATTTGGAGAGTTCACCGAAGAGGTTGCAGATTGTGC 2201 Query 2103 TTAAGCCGAGATATTCTGGTATATCAAAAGTTGTGATGTTCGTCAAGTGGTTGATACCCT 2162 |||||||||| |||| | |||||||||||||||||| ||||||||||||||||||||| Sbjct 2202 TTAAGCCGAGGTATTATAATATATCAAAAGTTGTGATATTCGTCAAGTGGTTGATACCCG 2261 Query 2163 CAAGAAACTATAGCATCTTGATCACTCGATCGATCCATGAATCAGCTCTAGATTACGGAT 2222 |||| |||||||| ||||||||||| |||||||||| ||||||||||| |||| | || | Sbjct 2262 CAAGTAACTATAGAATCTTGATCACCCGATCGATCCGTGAATCAGCTCAAGATAATGGTT 2321 Query 2223 ACATCTGGGATCTAACATTGTTATCTTTCAGGGGTAAGGAGGAATTTGAGCCGGTCCGCT 2282 ||| ||||||||||| ||| |||| |||| || |||||||||| |||||| || || Sbjct 2322 ACAACTGGGATCTAAGATTATTATGGTTCATGGCTAAGGAGGAACGTGAGCCT-TCTGCC 2380 Query 2283 CCCTAGGGATTT-TGTCTCGACAATGGACAGAGCTTTCTTTCGGTTTGAGTTTTCTGTTT 2341 ||||||||||| | |||||| | || |||||||||||||| ||||||| |||||||||| Sbjct 2381 CCCTAGGGATTGAT-TCTCGATAGTGAACAGAGCTTTCTTTTGGTTTGAATTTTCTGTTT 2439 Query 2342 ATCTAAACTCCGGAGAT-AGAA-A-GAG-GATATATTATTTTTCAGTTCTTTTGTAATAA 2397 || |||||||||||||| |||| | || |||||||| |||||||||||||||||| ||| Sbjct 2440 ATTTAAACTCCGGAGATCAGAAGATGATAGATATATTCTTTTTCAGTTCTTTTGTAGTAA 2499 Query 2398 TGGTTT-TGCTATAGCTTCAAGAG--GGTCCTAAAAAGAGAGTTTATAGAGCTTCAATGT 2454 || ||| |||||||||||||| || ||||| | ||||||| |||| ||||| ||| ||| Sbjct 2500 TG-TTTCTGCTATAGCTTCAAAAGATGGTCCGATAAAGAGAATTTAAAGAGCCTCACTGT 2558 Query 2455 AAAGGTCTCTGAGAGAAATGTAG-TGTGGTTCCAACATTTGGACAAATATTCGTTGTAAT 2513 ||||||| |||||||||||| | | |||||||||||||||||||||||| |||| || Sbjct 2559 AAAGGTCACTGAGAGAAATGCAACTC-GGTTCCAACATTTGGACAAATATTATTTGTGAT 2617 Query 2514 CTATTT-TGT-A---CAA-ACAAAGGAAGCAATTGAAATTT 2548 |||||| | | | ||| ||||||||||| |||||||||| Sbjct 2618 CTATTTGTATTAATTCAATACAAAGGAAGCGATTGAAATTT 2658 Score = 664 bits (359), Expect = 0.0 Identities = 444/482 (92%), Gaps = 17/482 (4%) Strand=Plus/Plus Query 26 TTATCGCTTCTTTAGTA-CTTCTCGACGAGATTTCTCCGAAATCGGTGATGCCTTTAACG 84 ||||| ||||||||||| | |||| ||||||||||||| ||||| | ||||||||||||| Sbjct 77 TTATCACTTCTTTAGTAGC-TCTCAACGAGATTTCTCCAAAATCAGCGATGCCTTTAACG 135 Query 85 AGGTCAAAGAGTCTGCCGGCGACGGAGAACGGTGGAT-C---C----G--A-T----TCG 129 || ||||||||||| |||||||||||||||||||||| | | | | | || Sbjct 136 AGATCAAAGAGTCTTCCGGCGACGGAGAACGGTGGATCCGATCGGGAGACACTCCAATCA 195 Query 130 GGAAGATCAGTGGCTGGGATTCTCTATAAATGGACTAATTATGGAAAAGGATGGAGATCT 189 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 196 GGAAGATCAGTGGCTGGGATTCTCTATAAATGGACTAATTACGGAAAAGGATGGAGATCT 255 Query 190 AGATGGTTCCTCCTCCGCGATGGAATCTTATCGTATTCCAAAATCCGAAGACCGGAGAAT 249 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 256 AGATGGTTCCTCCTCCGCGACGGAATCTTATCGTATTCCAAGATCCGAAGACCGGAGAAT 315 Query 250 GTGAATCTGTTATCTCCTTCCGATGATGTGAGGTTAATCGGAGATATCTCCACCGATCGT 309 || ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 316 GTCAATCTCTTATCTCCTTCCGATGATCTGAGGTTAATCGGAGATATTTCCACCGATCGT 375 Query 310 TTCTCGAGAATGAAGAGTTGTAGTGGCCGTAGTCGTCGGAAACATCACAAAACCATCGGC 369 ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 376 CTCTTGAGAATGAAGAGTTGTAGTGGCCGTAGTCGTCGGAAACATCACAAAAACATTGGC 435 Query 370 ATTGTTCATCTCAAGGTTTCATCTTACAGAGAAAGCAAATCTGATCATAGAAAGTTTTAT 429 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 436 ATTGTTCATCTCAAGGTTTCATCTTACCGAGAAAGCAAGTCTGATCATAGAAAGTTTTAT 495 Query 430 ATCTTTACTGCAACCAAGACTCTGCATCTGAGGACTGATTCTAGAAGTGATAGAGCAGCA 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 ATCTTTACTGCAACCAAGACTCTGCATCTGAGGACTGATTCTAGAAGTGATAGAGCAGCA 555 Query 490 TG 491 || Sbjct 556 TG 557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 126470863303 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5