BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490050
Length=2548
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12460.1 | Symbols: ORP2B | OSBP(oxysterol binding protein)-... 3077 0.0
> AT4G12460.1 | Symbols: ORP2B | OSBP(oxysterol binding protein)-related
protein 2B | chr4:7391277-7396509 FORWARD LENGTH=2658
Length=2658
Score = 3077 bits (1666), Expect = 0.0
Identities = 1947/2081 (94%), Gaps = 25/2081 (1%)
Strand=Plus/Plus
Query 487 GCAT-GTTCCTCTCCAGTCAATCAGTGGGGA-GTCTCCTTCGTATCACCAAAGGATTTAT 544
|||| ||||||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 584 GCATAGTTCCTCTCCAGTCAATTAATGGGGATTTCTCCTTCGTATCACCAAAGGATTTAT 643
Query 545 TCATATCTACAGAGAGACTAAAGAAACGGTTGCTTGAAGAGGGAATGAACGAGAGTCTTG 604
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 644 CCATATCTACCGAGAGACTAAAGAAACGGTTGTTTGAAGAGGGAATGAACGAGAGTCTTG 703
Query 605 TAACAGAGTGTGAACAGATCGTGGATTCAGAGTTCTCTGAAGCTCAAGAACAGATTAAAC 664
||| |||||| || |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 704 TAAAAGAGTGCGAGCAGATCGTGGATTCAGAGTTCTGTGAAGTTCAAGAACAGATTAAAC 763
Query 665 TTCTCCATGAAGAACGGACAAAGTTGCTTGATGCATTGAGGCAGCTAGAGATGGCCAACC 724
|||| || ||||| |||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 764 TTCTTCACGAAGAGCGGAAAAAGTTGCTTGATGCTTTGAGGCAGCTAGAGATGGCCAACC 823
Query 725 TTGAAGCTGAAACCTCAGGGATCCATGACAATGTCTACCAATTAAGAAATCATAAGTATT 784
||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 824 TTGAAGCTGAAGCCTCAGGGATCCATGACGATGTCTACCAATTAAGAAATCACAAGTATT 883
Query 785 CCAGCTTAGGACGTGGAAAATATAGTGAATGCAGTACAAGTGCTTCATCTGCTGATAAGC 844
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 884 CCAGCTTAGGACGTGGAAAATATAGTGAATGCAGTACAAGTGCTTCATCTGATGATAAGC 943
Query 845 AAGAGTTTGAGGATATCTCTGAGGAAGATGAGGCTTCTTTCCATGACACAAAGGAGTCAT 904
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 944 AAGAGTTTGAGGATATCTCTGAGGAAGACGAGGCTTCCTTCCATGACACAAAGGAGTCAT 1003
Query 905 TTAGTGAACCTGATGTTGGTTCTGTG-TACACACATTTCAAGAGACGAACAAAGCTTCCT 963
|| ||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||
Sbjct 1004 TTGGTGAACCTGATGTTGGTTCTGTGCT-CACGCATTTTAAGAGACGAACAAAGCTTCCT 1062
Query 964 GATCCAGCAGAGAAAGAGAGAGGTGTCAGTCTCTGGTCTATGATCAAAGATAATGTTGGA 1023
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1063 GATCCAGCAGAGAAAGAGAGAGGTGTCAGTCTCTGGTCTATGATCAAAGACAATGTTGGA 1122
Query 1024 AAGGATCTCACACGAGTTTGTCTTCCTGTTTATTTCAATGAACCAATATCTTCCCTCCAA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 AAGGATCTCACACGAGTTTGTCTTCCTGTTTATTTCAATGAACCAATATCTTCCCTCCAA 1182
Query 1084 AAGTGTTTTGAAGACTTGGAGTACTCTTATCTCTTGGACCAAGCATATGAATGCGGAAAA 1143
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1183 AAGTGTTTTGAAGACTTGGAGTACTCTTATCTCTTGGACCAAGCATATGAATACGGAAAA 1242
Query 1144 TCCGGGAACAGTCTCCTTAGAGCCCTGAATGTCGCTGCTTTTGCGGTCTCTGGTTATGCT 1203
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1243 TCCGGGAAGAGTCTCCTTAGAGCCCTCAATGTCGCTGCTTTTGCAGTCTCTGGTTATGCT 1302
Query 1204 TCCACCGAAGGACGACACTGTAAACCTTTCAACCCTTTACTTGGAGAAACTTATGAAGCT 1263
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1303 TCCACCGAAGGACGACACTGTAAACCTTTCAACCCTTTGCTCGGAGAAACATATGAAGCT 1362
Query 1264 GACTTTCCTGAAAAGGGAATTCGTTTCTTCTCTGAGAAGGTTAGCCACCATCCAACAGTT 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GACTTTCCTGAAAAGGGAATTCGTTTCTTCTCTGAGAAGGTTAGCCACCATCCAACAGTT 1422
Query 1324 ATCGCCTGCCATTGTAAAGGTAAAGGGTGGAAGTTCTGGGGCGACACAAACCTCAGGTCG 1383
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1423 ATCGCCTGCCATTGCGAAGGTAAAGGGTGGAAGTTCTGGGGCGACACAAACCTCCGGTCG 1482
Query 1384 AAGTTTTGGGGGAGATCGATCCAACTTGAACCCGTTGGAATCTTGACTCTCGAGTTTGAT 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 AAGTTTTGGGGGAGATCGATCCAACTTGAACCCGTTGGAATCTTGACTCTCGAGTTTGAT 1542
Query 1444 GATGGAGAAATTTTCCAGTGGAGCAAAGTAACAACAACTATATACAATATCCTACTTGGT 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GATGGAGAAATTTTCCAGTGGAGCAAAGTAACAACAACTATATACAATATCCTACTTGGT 1602
Query 1504 AAACTGTACTGCGATCACCATGGGATAATGCAAATCCGTGGAAATTGCCAATATTCTTGT 1563
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1603 AAACTGTACTGCGATCACCATGGGATAATGAAAATCCGTGGAAATCGCCAATATTCTTGT 1662
Query 1564 ACT-TTAAAGTTCAAGGAGCAATCGATTCTTGATAGAAATCCCCACCAGGTTAATGGTTT 1622
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 A-TGTTAAAGTTCAAGGAGCAATCGATTCTTGATAGAAATCCCCACCAGGTTAATGGTTT 1721
Query 1623 TGTAGAAGATGTAACTGGGAAAAAGGCCGCAACGGTATTTGGTAAATGGAATGATAGTCT 1682
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||
Sbjct 1722 TGTAGAAGATGTAACTGGAAAAAAGGCTGCGACGGTATTTGGTAAATGGAATGATAGCCT 1781
Query 1683 TTACTATGTTGCTGGTGATGGACTCAACAAGGCAAGCGCCTCATTACTGTGGAAAGCGAC 1742
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1782 TTATTATGTTGCTGGTGATGGAATCAACAAGGCAAGCGCCTCATTACTGTGGAAAGCGAC 1841
Query 1743 TAAGCCACCACCTAATGTCACTAGATACAACTTAACATCATTCGCGATGACGCTAAATGA 1802
||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1842 AAAGGCACCACCTAATGTCACCAGATACAACTTTACATCATTCGCGATGACGCTAAATGA 1901
Query 1803 ATTGACACCTGGTTTGGAGGAAAAGTTGCCTCCAACAGATTCTAGGCTCCGACCAGATCA 1862
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1902 ATTGATACCTGGTTTGGAGGAAAAGCTGCCTCCAACAGATTCTAGGCTCCGACCAGATCA 1961
Query 1863 ACGGCACTTGGAGAACGGTGAATATGAGAAGGCAAATGAAGAGAAACAACGATTAGAGAG 1922
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1962 ACGACACTTGGAGAACGGTGAATATGAGAAGGCAAATGAAGAGAAACAAAGATTAGAGAG 2021
Query 1923 AAGACAAAGAATGTCACGGCAAATTCAGGAAAGCGGGTGGAGACCGAGATGGTTCGAGCC 1982
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2022 AAGACAAAGAATGTCACGGCAAATTCAGGAAAGTGGGTGGAGACCGAGATGGTTCGAGCC 2081
Query 1983 ACAAGGAGAGAGTGAAAGCTATAAGTACACGGGCGGTTATTGGGAAGCACGAGATGATAA 2042
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2082 TCAAGGAGAGAGTGAAAGCTATAAGTATACGGGCGGTTATTGGGAAGCACGAGATGTTAA 2141
Query 2043 AAGTTGGGATGATTGCCCTAACATATTTGGAGAGTTCACCGAGGAGGTTGCAGATTGTGC 2102
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2142 AAGTTGGGATGATTGCCCTAACATATTTGGAGAGTTCACCGAAGAGGTTGCAGATTGTGC 2201
Query 2103 TTAAGCCGAGATATTCTGGTATATCAAAAGTTGTGATGTTCGTCAAGTGGTTGATACCCT 2162
|||||||||| |||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 2202 TTAAGCCGAGGTATTATAATATATCAAAAGTTGTGATATTCGTCAAGTGGTTGATACCCG 2261
Query 2163 CAAGAAACTATAGCATCTTGATCACTCGATCGATCCATGAATCAGCTCTAGATTACGGAT 2222
|||| |||||||| ||||||||||| |||||||||| ||||||||||| |||| | || |
Sbjct 2262 CAAGTAACTATAGAATCTTGATCACCCGATCGATCCGTGAATCAGCTCAAGATAATGGTT 2321
Query 2223 ACATCTGGGATCTAACATTGTTATCTTTCAGGGGTAAGGAGGAATTTGAGCCGGTCCGCT 2282
||| ||||||||||| ||| |||| |||| || |||||||||| |||||| || ||
Sbjct 2322 ACAACTGGGATCTAAGATTATTATGGTTCATGGCTAAGGAGGAACGTGAGCCT-TCTGCC 2380
Query 2283 CCCTAGGGATTT-TGTCTCGACAATGGACAGAGCTTTCTTTCGGTTTGAGTTTTCTGTTT 2341
||||||||||| | |||||| | || |||||||||||||| ||||||| ||||||||||
Sbjct 2381 CCCTAGGGATTGAT-TCTCGATAGTGAACAGAGCTTTCTTTTGGTTTGAATTTTCTGTTT 2439
Query 2342 ATCTAAACTCCGGAGAT-AGAA-A-GAG-GATATATTATTTTTCAGTTCTTTTGTAATAA 2397
|| |||||||||||||| |||| | || |||||||| |||||||||||||||||| |||
Sbjct 2440 ATTTAAACTCCGGAGATCAGAAGATGATAGATATATTCTTTTTCAGTTCTTTTGTAGTAA 2499
Query 2398 TGGTTT-TGCTATAGCTTCAAGAG--GGTCCTAAAAAGAGAGTTTATAGAGCTTCAATGT 2454
|| ||| |||||||||||||| || ||||| | ||||||| |||| ||||| ||| |||
Sbjct 2500 TG-TTTCTGCTATAGCTTCAAAAGATGGTCCGATAAAGAGAATTTAAAGAGCCTCACTGT 2558
Query 2455 AAAGGTCTCTGAGAGAAATGTAG-TGTGGTTCCAACATTTGGACAAATATTCGTTGTAAT 2513
||||||| |||||||||||| | | |||||||||||||||||||||||| |||| ||
Sbjct 2559 AAAGGTCACTGAGAGAAATGCAACTC-GGTTCCAACATTTGGACAAATATTATTTGTGAT 2617
Query 2514 CTATTT-TGT-A---CAA-ACAAAGGAAGCAATTGAAATTT 2548
|||||| | | | ||| ||||||||||| ||||||||||
Sbjct 2618 CTATTTGTATTAATTCAATACAAAGGAAGCGATTGAAATTT 2658
Score = 664 bits (359), Expect = 0.0
Identities = 444/482 (92%), Gaps = 17/482 (4%)
Strand=Plus/Plus
Query 26 TTATCGCTTCTTTAGTA-CTTCTCGACGAGATTTCTCCGAAATCGGTGATGCCTTTAACG 84
||||| ||||||||||| | |||| ||||||||||||| ||||| | |||||||||||||
Sbjct 77 TTATCACTTCTTTAGTAGC-TCTCAACGAGATTTCTCCAAAATCAGCGATGCCTTTAACG 135
Query 85 AGGTCAAAGAGTCTGCCGGCGACGGAGAACGGTGGAT-C---C----G--A-T----TCG 129
|| ||||||||||| |||||||||||||||||||||| | | | | | ||
Sbjct 136 AGATCAAAGAGTCTTCCGGCGACGGAGAACGGTGGATCCGATCGGGAGACACTCCAATCA 195
Query 130 GGAAGATCAGTGGCTGGGATTCTCTATAAATGGACTAATTATGGAAAAGGATGGAGATCT 189
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 196 GGAAGATCAGTGGCTGGGATTCTCTATAAATGGACTAATTACGGAAAAGGATGGAGATCT 255
Query 190 AGATGGTTCCTCCTCCGCGATGGAATCTTATCGTATTCCAAAATCCGAAGACCGGAGAAT 249
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 256 AGATGGTTCCTCCTCCGCGACGGAATCTTATCGTATTCCAAGATCCGAAGACCGGAGAAT 315
Query 250 GTGAATCTGTTATCTCCTTCCGATGATGTGAGGTTAATCGGAGATATCTCCACCGATCGT 309
|| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 316 GTCAATCTCTTATCTCCTTCCGATGATCTGAGGTTAATCGGAGATATTTCCACCGATCGT 375
Query 310 TTCTCGAGAATGAAGAGTTGTAGTGGCCGTAGTCGTCGGAAACATCACAAAACCATCGGC 369
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 376 CTCTTGAGAATGAAGAGTTGTAGTGGCCGTAGTCGTCGGAAACATCACAAAAACATTGGC 435
Query 370 ATTGTTCATCTCAAGGTTTCATCTTACAGAGAAAGCAAATCTGATCATAGAAAGTTTTAT 429
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 436 ATTGTTCATCTCAAGGTTTCATCTTACCGAGAAAGCAAGTCTGATCATAGAAAGTTTTAT 495
Query 430 ATCTTTACTGCAACCAAGACTCTGCATCTGAGGACTGATTCTAGAAGTGATAGAGCAGCA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 ATCTTTACTGCAACCAAGACTCTGCATCTGAGGACTGATTCTAGAAGTGATAGAGCAGCA 555
Query 490 TG 491
||
Sbjct 556 TG 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126470863303
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5