BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490053
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12480.1 | Symbols: pEARLI 1 | Bifunctional inhibitor/lipid-... 795 0.0
AT4G12470.1 | Symbols: AZI1 | azelaic acid induced 1 | chr4:740... 616 1e-175
AT4G12500.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 505 3e-142
AT4G12490.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 409 2e-113
> AT4G12480.1 | Symbols: pEARLI 1 | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein
| chr4:7406105-7406937 REVERSE LENGTH=833
Length=833
Score = 795 bits (430), Expect = 0.0
Identities = 548/605 (91%), Gaps = 7/605 (1%)
Strand=Plus/Plus
Query 1 AGaaaaaaaTGGCTTCAAAGAACTCAGCCTCTATTGCTCTTTTCTTCGCCCTCGACATCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 53 AGAAAAAAATGGCTTCAAAGAACTCAGCCTCTATTGCTCTTTTCTTCGCCCTTAACATCA 112
Query 61 TATTCTTCACCTTAACTGCTGCAACTGATTGTGGTTGCAACC-AGAGTCCTAAGCACAAA 119
|||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||
Sbjct 113 TATTCTTCACCTTAACCGCTGCAACAGATTGTGGTTGCAACCCA-AGTCCTAAGCACAAG 171
Query 120 CCGGTCCCTAGTCCTAAACCCAAGCCAGTCCCAAGTCCTAAACCCAAGCCGGTCCCAAGT 179
|| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 172 CCTGTCCCAAGTCCTAAACCCAAGCCGGTCCCAAGTCCCAAACCCAAGCCGGTCCCAAGT 231
Query 180 CCTTCGGTCCCAACTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCAAGC 239
||||| || |||| |||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 232 CCTTCAGTACCAAGTCCTTCGGTCCCAAGTCCTAACCCTAGGCCGGTCACGCCTCCGAGA 291
Query 240 ACCCCTAGTTCATCTGGAAACTGCCCTATAGATGTTCTCA-AGCTCGGTGTATGTGCAAA 298
|||||| | |||||||||||||| ||||| |||| ||||| | |||||||||||||| ||
Sbjct 292 ACCCCTGGCTCATCTGGAAACTGTCCTATCGATGCTCTCAGA-CTCGGTGTATGTGCGAA 350
Query 299 TGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCATCAGCTCAACCATGTTGCTC 358
|| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 351 CGTTTTAAGCAGTCTACTCAACATTCAATTGGGTCAGCCATCAGCTCAACCATGTTGCTC 410
Query 359 GCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTGTGCACTGCTCTTAGGGC 418
||| |||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct 411 GCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGTCTTTGCACTGCGCTTAGGGC 470
Query 419 TAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTCAGCGTTCTTCTCAACGTTTG 478
|||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 471 TAACGTTCTTGGTATCAACCTTAACGTCCCGATATCTCTCAGTGTTCTTCTCAACGTTTG 530
Query 479 TAACAGAAAGGTTCCGTCTGGTTTCCAATGTGCTTAAACGATATCAGCTATGCATACGAT 538
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 531 TAACAGAAAGGTTCCGTCTGGCTTCCAATGTGCTTGAAGGATATCAGCTATGCATACGAT 590
Query 539 GCGATGCCCGTACACAA-TATACT-CTTCAAAATTACTACAGTTTGAATAAATTCATGTA 596
| ||||||||| ||||| ||| || |||| ||||| |||||| ||||||||| ||||||
Sbjct 591 GTGATGCCCGTGCACAAATAT-CTTCTTCGAAATTGTTACAGTATGAATAAATGCATGTA 649
Query 597 ATCTA 601
| |||
Sbjct 650 AGCTA 654
> AT4G12470.1 | Symbols: AZI1 | azelaic acid induced 1 | chr4:7401109-7401907
REVERSE LENGTH=799
Length=799
Score = 616 bits (333), Expect = 1e-175
Identities = 521/605 (86%), Gaps = 39/605 (6%)
Strand=Plus/Plus
Query 3 aaaa-aaaTGGCTTCAAAGAACTCAGCCTCTATTGCTCTTTTCTTCGCCCTCGACATCCT 61
|||| |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||
Sbjct 45 AAAACAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCTCAACATCCT 104
Query 62 ATTCTTCACCTTAACTGCTGCAACTGATTGTGGTTGCAACCAGAGTCCTAAGCACAAACC 121
|| ||||||||||| | |||||| | ||| || | || | | ||
Sbjct 105 CTTTTTCACCTTAACCGTTGCAAC--A----AATTG----CA-A---CT--G--C-AA-- 143
Query 122 GGTCCCTAGTCCTAAACCCAAGCCAGTCCCAAGTCCTAAACCCAAGCCGGTCCCAA-GTC 180
| || ||||||||||| |||||||||||||||||||| ||||||||||| |||| |||
Sbjct 144 -G--CCAAGTCCTAAACCAAAGCCAGTCCCAAGTCCTAAGCCCAAGCCGGT-CCAATGTC 199
Query 181 CTTCGGTCC-CAAC-TCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCAAG 238
| || ||| | | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 200 C-TC-CTCCACCCCGTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCACG 257
Query 239 CACCCCTAGTTCATCTGGAAACTGC---CCTATAGATGTTCTCAAGCTCGGTGTATGTGC 295
||||||| ||||||| |||||| || ||||| |||| |||||||||||||||||||||
Sbjct 258 CACCCCTGGTTCATCCGGAAACAGCTGTCCTATTGATGCTCTCAAGCTCGGTGTATGTGC 317
Query 296 AAATGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCATCAGCTCAACCATGTTG 355
||||||| ||||||||||||| |||||||||||||| |||||||| |||||| ||||||
Sbjct 318 AAATGTCTTAAGCAGTCTACTCAACATCCAGTTGGGACAGCCATCCTCTCAACAATGTTG 377
Query 356 CTCGCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTGTGCACTGCTCTTAG 415
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 378 CTCGCTCATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTATGCACTGCTCTGAG 437
Query 416 GGCTAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTCAGCGTTCTTCTCAACGT 475
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 438 GGCTAACGTTCTTGGTATCAACCTTAACGTTCCGATATCTCTCAGCGTTCTTCTCAACGT 497
Query 476 TTGTAACAGAAAGGTTCCGTCTGGTTTCCAATGTGCTTAAACGATATC-AGCTATGCATA 534
||||||||||||| |||| ||||||||||||||||||| | | ||||| | ||||||||
Sbjct 498 TTGTAACAGAAAGCTTCCATCTGGTTTCCAATGTGCTTGAGCAATATCCAT-TATGCATA 556
Query 535 CGATGCGATGCCCGTACACAATATAC-TCTTCAAAATT-ACTACAGTTTGAATAAATTCA 592
|||||||||||| || |||||||| | ||||| ||||| | || ||||||||||||| ||
Sbjct 557 CGATGCGATGCCAGTGCACAATAT-CGTCTTCGAAATTTATTATAGTTTGAATAAATGCA 615
Query 593 TGTAA 597
|||||
Sbjct 616 TGTAA 620
Score = 84.2 bits (45), Expect = 1e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 600 TAATTTGTTAAAGATAAAAAATAAATGTGTGAGATTTTTATAGttttt 647
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 643 TAATTTGTTAAAGAGAAAAAATAAATGTGTGAGATTTTTATAGTTTTT 690
> AT4G12500.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7414150-7414927
REVERSE LENGTH=778
Length=778
Score = 505 bits (273), Expect = 3e-142
Identities = 514/624 (82%), Gaps = 42/624 (7%)
Strand=Plus/Plus
Query 8 aaTGGCTTCAAAGAACTCAGCCTCTATTGCTCTTTTCTTCGCCCTCGACATCCTATTCTT 67
||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||| || ||
Sbjct 25 AATGGCTTCAAAGAACTCAACCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCTTTTTTT 84
Query 68 CACCTTAACTGCTGCAACTGATTGTGGTTGCAACC-AGAGTCCTAAG-C----A------ 115
||||||||| |||| ||||||||| | ||||||| | ||||||||| | |
Sbjct 85 CACCTTAACCACTGCTACTGATTGTCGATGCAACCTA-AGTCCTAAGCCTAGGACGGTCC 143
Query 116 CAA-ACC---GGTCCCTAGTCCTAA--ACCCAAG-CC--AG-TCCCAAGTCC-T-AAACC 163
||| || |||||| |||||||| ||||||| || | | |||||||| | ||
Sbjct 144 CAAGTCCAAAGGTCCCGAGTCCTAAGTACCCAAGTCCTTCGATTCCAAGTCCTTCGGTCC 203
Query 164 CAA--GC--CGGTCCCAAGTCCTTCGGTCCCAACTCCTTCAGTCCCAAGTCCTAATCCTA 219
||| | | ||||||| |||||| || ||||||||||| || ||||||||||| ||||
Sbjct 204 CAACTCCTTCAGTCCCAACTCCTTCAGTTCCAACTCCTTCGGTACCAAGTCCTAACCCTA 263
Query 220 GGCCGGTCACACCTCCAAGCACCCCTAGTTCATCTGGAAACTGCCCTATAGATGTTCTCA 279
||| ||||| ||||| || |||||| ||||||| |||||||| ||||| |||| ||||
Sbjct 264 CGCCTGTCACTCCTCCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTC- 322
Query 280 AG-CTCGGTGTATGTGCAAATGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCA 338
|| |||||||| ||||| ||||||||||| ||||||||||| | |||||||| ||||||
Sbjct 323 AGACTCGGTGTGTGTGCGAATGTCCTAAGTGGTCTACTTAACGTGCAGTTGGGACAGCCA 382
Query 339 TCAGCTCAACCATGTTGCTCGCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGT 398
|||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 383 TCAGCTCAACCATGCTGCTCGCTCATCCAAGGTTTGGTTGACCTTGACGCTGCGATTTGT 442
Query 399 CTGTGCACTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTC 458
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 443 CTCTGCACTGCCCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTC 502
Query 459 AGCGTTCTTCTCAACGTTTGTAACAGAAAGG-TTCCGTCTGGTTTCCAATGTGCTTAAAC 517
|| ||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| |
Sbjct 503 AGTGTTCTTCTCAACGTTTGCAACAGAA-GGCTTCCGTCTGATTTCCAATGTGCTTAAGC 561
Query 518 GATATCAGC---TATGCATACGATGCGATGCCCGTACACAATATACTCTTCAAAATTACT 574
| ||||||| ||| ||||| | | |||| || || | | ||||| ||||| | |
Sbjct 562 GGTATCAGCGGCTATCCATACTCTTC-ATGCGCG--CAGTGT-T-CTCTTTAAAATCATT 616
Query 575 ACAGTTTGAATAAATTCATGTAAT 598
|| |||||||||||| |||| |||
Sbjct 617 ACTGTTTGAATAAATGCATG-AAT 639
> AT4G12490.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:7409621-7410406
REVERSE LENGTH=786
Length=786
Score = 409 bits (221), Expect = 2e-113
Identities = 360/425 (85%), Gaps = 17/425 (4%)
Strand=Plus/Plus
Query 174 CCAAGTCCTTCGGTCCCAACTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCT 233
|||| |||||||||||||| |||||| || ||||||||||| |||| ||| |||| |||
Sbjct 236 CCAACTCCTTCGGTCCCAAGTCCTTCCGTACCAAGTCCTAACCCTACGCCAGTCATTCCT 295
Query 234 CCAAGCACCCCTAGTTCATCTGGAAACTGCCCTATAGATGTTCTCAAG-CTCGGTGTATG 292
|| || |||||| ||||||| |||||||| ||||| |||| |||| || |||||||||||
Sbjct 296 CCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTC-AGACTCGGTGTATG 354
Query 293 TGCAAATGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCATCAGCTCAACCATG 352
||| ||||| |||||| ||||||||||| | |||||||| ||||||||| ||||||||||
Sbjct 355 TGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTCAACCATG 414
Query 353 TTGCTCGCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTGTGCACTGCTCT 412
||||| || || ||||||||||||||| | ||||||||| |||| || |||||||||||
Sbjct 415 CTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCACTGCTCT 474
Query 413 TAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTCAGCGTTCTTCTCAA 472
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 475 TAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTCTTCTCAA 534
Query 473 CGTTTGTAACAGAAAGG-TTCCGTCTGGTTTCCAATGTGCTTAAACGATATCAGCTATGC 531
|||||| ||||||| || |||||||| |||||||||||||| | ||||||| || |
Sbjct 535 CGTTTGCAACAGAA-GGCTTCCGTCTAATTTCCAATGTGCTTGAGGGATATCAATTACAC 593
Query 532 ATACGATGCGATGCCCGTACACAATATACTCTTCAAAATTA-CTACAGTTTGAATAAATT 590
|||||| || | ||||| | ||||||| ||||| | | ||||||||||||| ||
Sbjct 594 ATACGA--CG---C----ACACAGTTTACTCTTTAAAATAATC-ACAGTTTGAATAA-TT 642
Query 591 -CATG 594
||||
Sbjct 643 GCATG 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5