BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490054

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12530.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   640    0.0  


> AT4G12530.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:7428027-7428563 
REVERSE LENGTH=537
Length=537

 Score =  640 bits (346),  Expect = 0.0
 Identities = 408/437 (93%), Gaps = 7/437 (2%)
 Strand=Plus/Plus

Query  1    ATGCTACATAGCTCAAAGTAACAAACATACCCTTATAACATATAGAAAGATCG-AAACAC  59
            |||||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||| 
Sbjct  1    ATGCTACATAACTCAAAGTAACAAACATACACATATAACATATAGAAAGATCGAAAACAA  60

Query  60   AAGATCGGGATGATTATGGCTCCAAAGACCTCAGCTACACTTGCTTTATTCCTTGTGATC  119
            ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  61   AAGATCGGGATGAGTATGGCTCCAAAGACCTCAACTACACTTGCTTTATTCCTTGTGACC  120

Query  120  AATATTCTCTTCCTCAACCTCATTATCCC-G-GTTTTCGCAGAAAATACTTGCCCGAGAG  177
            ||||||||||||||||||||||||| ||| | | || |||||| ||||||||||| ||||
Sbjct  121  AATATTCTCTTCCTCAACCTCATTA-CCCTGAG-TTGCGCAGACAATACTTGCCCAAGAG  178

Query  178  ACGCTCTCAAACTTTCCACATGCGCGAATGTTCTCAACCTCATCAACTTGAATCTCGGTG  237
            ||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |
Sbjct  179  ACGTTCTCAAACTTTCGACATGCTCGAATGTTCTCAACCTCATCAACTTGAAGCTCGGGG  238

Query  238  CACGAGCTATGAGACCTTGTTGCTCTATTCTCTTTGGTCTAATTGATCTCGATGTTG-TG  296
            ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  239  CACCAGCTATGAGGCCTTGTTGCTCTATTCTCTTTGGTCTAATTGATCTCGATGTTGCTG  298

Query  297  GTTTGCCTTTGCACCGCGCTGAAGCTCAGCCTTCTTGGCATCACCATCGACACTCCTATT  356
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  299  -TTTGCCTTTGCACCGCGCTCAAGCTCAGCCTTCTTGGCATCACCATCGACACTCCTATT  357

Query  357  CATCTTAACTTAGCCCTTAACGCCTGTGGAGGTACCCTTCCCGATGGATTCCGTTGCCCA  416
            || |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  358  CACCTTAACTTGGCTCTTAACGCCTGTGGAGGTACCCTTCCTGATGGATTCCGTTGCCCA  417

Query  417  ACATAGCTACAATATAT  433
            |||||||||||||||||
Sbjct  418  ACATAGCTACAATATAT  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5