BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490057
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction... 1927 0.0
> AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441764-7443754 FORWARD
LENGTH=1560
Length=1560
Score = 1927 bits (1043), Expect = 0.0
Identities = 1205/1283 (94%), Gaps = 12/1283 (1%)
Strand=Plus/Plus
Query 1 AAAAATGGCGACGATTCCAATGGATATCGTCAACGACATCTTCCTCCGATTACCAGCAAA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 48 AAAAATGGCGACGATTCCAATGGATATCGTCAACGACATATTCCTCCGATTACCAGCAAA 107
Query 61 AACCT-TAGTTCGTTGTCGTACTCTCTCAAAGCCATGTTATCATCTAATCAACGATCCCG 119
|| || |||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 108 AA-CTCTAGTTCGTTGCCGTGCTCTCTCTAAGCCATGTTATCATCTAATCAACGATCCAG 166
Query 120 ATTTCATCGAATCTCATCTTCATCGCGTTCTTCAATCTGGTGATCATCTCATGATTCTTC 179
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 167 ATTTCATCGAATCTCATCTTCATCGCGTTCTTCAAACCGGTGATCATCTCATGATTCTTC 226
Query 180 TCAGAGGAGCTCTTCGTCTCTACACTGTTGATCTCGATTCACTTGATTCCGTCTCCGACG 239
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 227 TCAGAGGAGCTCTTCGTCTCTACTCTGTAGATCTCGATTCACTTGATTCCGTCTCCGACG 286
Query 240 TCGAGCATCCGATGAAACGTGGTGGTCCCACTGAAGTTTTCGGATCCAGTAACGGTTTAA 299
| |||||||||||||||||||||||||| || |||||||| || || ||||||||||
Sbjct 287 TTGAGCATCCGATGAAACGTGGTGGTCCGACCGAAGTTTTTGGTTCTTCCAACGGTTTAA 346
Query 300 TCGGGTTATCGAATTCTCCGACTGATTTAGCGGTTTTTAATCCGTCTACTCGACAGATTC 359
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 347 TCGGGTTATCGAATTCTCCAACTGATTTAGCGGTTTTTAATCCTTCGACTCGACAGATTC 406
Query 360 ATCGATTACCTCCTTCGTCTATCGATCTTCCCGATGGTTCGAGTACTCGTGGTTACGTGT 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 407 ATCGATTACCTCCTTCGTCTATCGATCTCCCCGATGGTTCGAGTACTCGTGGTTACGTGT 466
Query 420 TTTACGGATTTGGTTATGATTCTGTGAGTGATGATTATAAAGTTGTGAGGATGGTTCAGT 479
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 467 TTTACGGATTAGGTTATGATTCTGTTAGTGATGATTATAAAGTTGTGAGGATGGTTCAGT 526
Query 480 TTAAGATAGATTCTGATGATGAGCTTGGTTGTAGTTTTCCTTATGAGGTTAAAGTGTTTA 539
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 527 TTAAGATAGATTCAGAAGATGAACTTGGTTGTAGTTTTCCTTATGAGGTTAAAGTGTTTA 586
Query 540 GTTTAAAGAAGAATTCATGGAAAAGAATCGAATCGGTTTTGACGGCGTCGATTCGGCTTT 599
|||| ||||||||||||||||| ||||||||||| | || || ||||||||| |||||
Sbjct 587 GTTTGAAGAAGAATTCATGGAAGAGAATCGAATCAG---TGGCGTCGTCGATTCAGCTTT 643
Query 600 TGTTTTACTTTTATTATCATCTCTTGTATCGTCGTGGTTATGGTGTTCTTGCTGGTAATA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGTTTTACTTTTATTATCATCTCTTGTATCGTCGTGGTTATGGTGTTCTTGCTGGTAATA 703
Query 660 GTCTTCATTGGGTTTTACCTCGAAGACCTGGTTTGATTGCGTTTAATCTCATTGTGAGGT 719
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 704 GTCTTCATTGGGTTTTACCTAGAAGACCTGGTTTGATTGCGTTTAATCTCATTGTTAGAT 763
Query 720 TTGATCTTGCCTTGGAAGAGTTTGGGATTGTGAGGTTTCCGGAAGCTGTGGCTAATGGTA 779
|||||||||||||||||||||||| |||||| ||||||| ||||| || || |||||||
Sbjct 764 TTGATCTTGCCTTGGAAGAGTTTGAGATTGTTCGGTTTCCTGAAGCGGTTGCGAATGGTA 823
Query 780 ATGTCGATATTCAGATGGATATCAG-TGTTTTAGATGGTTGTCTTTGTTTGATGTGTAAC 838
|||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 824 ATGTTGATATTCAGATGGATAT-AGGTGTTTTAGATGGTTGTCTTTGCTTGATGTGTAAC 882
Query 839 TATGATCAGAATTATGTTGATGTTTGGATGATGAAAGAATACAATGTGAGA-AGTTCTTG 897
|||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 883 TATGATCAGAGTTATGTTGATGTTTGGATGATGAAAGAATACAATGTGAGGGA-TTCTTG 941
Query 898 GACTAAGGTGTTTACGGTTCAGAAACCAAAAAGTGTGAAATCGTTTGCGTATATGAGACC 957
||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 942 GACTAAGGTTTTTACGGTTCAGAAACCGAAAAGTGTGAAGTCGTTTTCGTATATGAGACC 1001
Query 958 TTTGGTTTATTCTAAGGACAAGGATAAGGTTCTTTTGGAGCTTAATAATACAAAGCTAGT 1017
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 1002 TTTGGTTTATTCTAAGGATAAGAAAAAGGTTCTTTTGGAGCTTAATAATACAAAGCTAGT 1061
Query 1018 GTGGTTTGATATAGAGAGTAAGAAGATGAGTACTCTTAGGATTAAGGATTGCCCTAGCTC 1077
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTGGTTTGATTTAGAGAGTAAGAAGATGAGTACTCTTAGGATTAAGGATTGCCCTAGCTC 1121
Query 1078 GTATAGTGCGGAAGTCGTTGTGAGTAGCCTTGTTTTGGGGTGTAAAGGAGATCTTGAA-A 1136
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1122 GTATAGTGCGGAACTCGTTGTGAGTAGCCTTGTCTTGGGGTGTAAAGGAGATCTT-AATA 1180
Query 1137 ATATTAAGTATCGGAAAGAACAAGAAGCTAAAGAAGCTAGAGAAGCTAAAATGATGCAGA 1196
| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1181 ACATTAAGTATCGAAAAGAACAACAAGCTAAAGAAGCTAGAGAAGCTAAAATTATGCAGA 1240
Query 1197 ACACTAAAAGGAGGGATGATTTCCTGTCCAAGGGATTCAAGCTGGTCTTATAAACaaaaa 1256
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 1241 ACACTAAAAGGAGGGATGATTTCCTGTCCAAAGGATTCAAGCTGGTCTTATAAGCCAAAA 1300
Query 1257 aaCAAGAGACAAGAGCTAAAGCT 1279
| ||||||||| |||||||||||
Sbjct 1301 A-CAAGAGACAGGAGCTAAAGCT 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5