BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg490058
Length=2962
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12570.1 | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4... 4154 0.0
> AT4G12570.1 | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445362-7449086
FORWARD LENGTH=3112
Length=3112
Score = 4154 bits (2249), Expect = 0.0
Identities = 2667/2864 (93%), Gaps = 48/2864 (2%)
Strand=Plus/Plus
Query 1 CTGTGTTAAACCCAGACGAAAcctccgatcttcttctcctctc-caatctcttcatcttc 59
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 36 CTGTGTTAAACCCAGACGAAACCTTCGATCTTCTTCTCCTCTCTCAATCTCTTCACCTTC 95
Query 60 c-tcctcc-tcctcctcacctctgtactccGTTACGGTTAATTTTCCGGCGAAATCG-AT 116
| |||||| || ||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 96 CTTCCTCCTTCTTCCTCACCTCTATACTCCGTTACGGTTAATTTTCCGGC--CATCGAAT 153
Query 117 -TTGGATAAGGTTTTGGCGAAAAACC---AGA-ACCGATagag--atagagagagagaTT 169
|||||||||||||| ||| ||| || ||| | ||||||| | |||||||||||||
Sbjct 154 GTTGGATAAGGTTTTCGCG-AAAGCCGATAGAGAAAGATAGAGACAGAGAGAGAGAGATT 212
Query 170 CTCGTCGCTCGATGACTCTAAGCCGTTCATCAGCCGCCGATTCAACCAATAACTCTAACC 229
||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 213 CTCGTCGCTAAATGACTCTAAGCCGTTCATCAGCCGACGATTCAACCAATAACGCTAACC 272
Query 230 GATCTTACTCCGCCGTGGCTGGAACCGATCATAAACGGAAACTAGACGATTACGACGCTT 289
||||||||||||||||||||||||||||| | |||| | || | |||| |||| |
Sbjct 273 GATCTTACTCCGCCGTGGCTGGAACCGATAACAAAC-G-AA--A-ACGA-GACGA-G--- 322
Query 290 CGTCGTCTCCTGATTACGTCGGCGTTGTTGATTTTCTCCAGAAAATGAAGAAACACGAAA 349
| | ||| |||||||||||||||||| ||| |||| ||| |||||||||| ||||
Sbjct 323 -GAC-TCTTCTGATTACGTCGGCGTTGCTGAAAGTCTCGAGATGTTGAAGAAACAAGAAA 380
Query 350 TTGACGCCGATCATATGGCTGCGTCGGCTCAACAGACTTTGATTTCGTGGAGATCCGGTG 409
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 381 TCGACGCCGATCATATGGCTGCGTCGGCTCAACAGACTTTAATTTCATGGAGATCCGGTG 440
Query 410 AGAATTCCGGATTTAATCGGTCTTTATCTTCTTCCGGCGAGTGTTCTTCGTCGAATCGTC 469
|||||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 441 AGAATTCC---------CGGTCTCTATCTTCTTCCGGTGAGTGTTCTTCGTCGAATCGTC 491
Query 470 CTGAGTCGACTCGGTTACAAATCTTTGTGAGGATGATGTCTGGAGGTAAAACGATTGTGA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CTGAGTCGACTCGGTTACAAATCTTTGTGAGGATGATGTCTGGAGGTAAAACGATTGTGA 551
Query 530 TCCACGCTGATAAAAACGATACTGTTGAGAAGCTTCATGAGAGAATCGAGTGGAAAACGA 589
|||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 552 TCCACGCTGAGAAATACGATACTGTTGAGAAACTTCATCAGAGAATCGAGTGGAAAACGA 611
Query 590 AGATTCCGGTGAGTGAGCAACGAGTTATCTATAAAGGTAAGCAGTTACAGTATGAACACT 649
||||||||| | |||||||||||||||||| |||||||||||| ||||| |||| |||
Sbjct 612 AGATTCCGGCGCTTGAGCAACGAGTTATCTACAAAGGTAAGCAGCTACAGCGTGAAAACT 671
Query 650 CGCTTGCTTACTACTCGATCGAGCAAGACGCTTCGCTTCAGCTCGTTGGTAGGATGCAGA 709
||||| |||||||||| ||||||||||||||||||||||||||||||| | | |||||||
Sbjct 672 CGCTTACTTACTACTCCATCGAGCAAGACGCTTCGCTTCAGCTCGTTGCTCGTATGCAGA 731
Query 710 GCACAGAGCATCCTGTAGCTTGGCAAACGATTGATGATATTATGTACACAATTTCGAGAA 769
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 732 GCACAGAGCATCCTGTAGCTTGGCAAACGATTGATGATATTATGTATACAATTTCGAGAA 791
Query 770 TGTATAAAGGTGAGAATCTTCAATCTAACATAAATGAGAAGATTGTTACTTTCTTCGCGA 829
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 792 TGTATAAAGGTGAGAATCTTCAATCTAACATCAACGAGAAGATTGTTACTTTCTTTGCGA 851
Query 830 TGATTCCTGTGGAGAACGATGAATCGATTGCGAAATATTTGAAGATTTTCTCGAACTCTT 889
||||||||||||||| || |||||||||||||||||| | || ||||||||||||||||
Sbjct 852 TGATTCCTGTGGAGAGTGACGAATCGATTGCGAAATATCTCAACATTTTCTCGAACTCTT 911
Query 890 CGGTTCCAGCTGCTTTAGTGATGCTATATGCTTCTTCTTTAGAGAGGAATAAGTCTTGTG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CGGTTCCAGCTGCTTTAGTGATGCTATATGCTTCTTCTTTAGAGAGGAATAAGTCTTGTG 971
Query 950 CTAAGAGTTCTGTTAAGCTGTTTTTGAGTAGCTGCGTAGCCTTGCCGAAGAATCAGCAGA 1009
||||||| |||||||||||||| ||||||| || ||||| || |||||||||||| |||
Sbjct 972 CTAAGAGCTCTGTTAAGCTGTTCTTGAGTAATTGTGTAGCTTTACCGAAGAATCAGAAGA 1031
Query 1010 ACTATTGTTTACCGATAGTGTTAGAGTTTTGTAAAATTCTTAGGAAAGTTTGCCCTGATC 1069
||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1032 ACTATTGTTTACCAATAGTGTTAGAGTTTTGTAAACTGCTTAGGAAAGTTTGCCCTGATC 1091
Query 1070 AGAAGCTATATGTTACTTGCCGGAACACCTTGGGATCAATGCTGGAGACGTTTGATAACC 1129
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1092 AGAAGCTATATGTTACTTGCCGGAACACCTTGGGATCGATGCTGGAAACGTTTGATAACC 1151
Query 1130 CTCGTGGTGTATTTAATGATGGATATTCGACTTTCGGGGTGGAGATTTTCCCCTTCTTTA 1189
||| |||||||| ||||||| |||| |||||| ||||||||||||||||| |||||||
Sbjct 1152 CTCATGGTGTATATAATGATCAATATGAGACTTTTGGGGTGGAGATTTTCCCGTTCTTTA 1211
Query 1190 CCGAGTTAACTGGTCTTTTGGTGAATGAGTTAGTC-CAGAATTCAGGTCCAAGTTTCTGT 1248
| |||||||||||||||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct 1212 CTGAGTTAACTGGTCTTTTGTTGAATGAGTTAG-CTCAGAATTCAGGGCCTAGTTTCTGT 1270
Query 1249 GACTTTCATAAATTTTCTTCCTTTTGGCAACAGTTGAGGAAGGCCATTGAATTCAAAGAT 1308
|||||||| ||| ||||||||||||||||||| |||||||| | ||||||| |||||| |
Sbjct 1271 GACTTTCAGAAAGTTTCTTCCTTTTGGCAACAATTGAGGAAAGTCATTGAACTCAAAGTT 1330
Query 1309 G-CTGACTCGATTCCCAATGTTTTACCTCCGCGAAGTACTCCATTGGAAGCGGAGATCAG 1367
| || | | ||||||| ||| |||||| || ||||||| ||||||| |||||||||||
Sbjct 1331 GCCTTTC-CCATTCCCATTGTGTTACCTATGCAAAGTACTGCATTGGAGGCGGAGATCAG 1389
Query 1368 ACATCTTCATCAGTTATTTGGAAGCTTGTTGACGACAATGGACCTTTGTATGTGTAGGGT 1427
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1390 ACATCTTCATCGGTTATTTGGAAGCTTGTTGACGACTATGGACCTTTGTATGTGTAGGGT 1449
Query 1428 TGA------G-T--CTGACAAAGAAGTTGGAAACAGTGAAACTGTATCTTCATCGTGGTC 1478
|| | | |||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1450 CGAGTCTTCGTTGGCTGATAAAGAAGTTGGAAACAGTGAAACTATGTCTTCATCGTGGTC 1509
Query 1479 TCAATATCTATCCATTCTGAAGATTATCAATTCAATGTCTAACATCTATCAAGGTGCTAA 1538
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1510 TCAGTATCTTTCCATTCTGAAGATTATCAATTCAATGTCTAACATTTATCAAGGTGCTAA 1569
Query 1539 GGGACAGCTAGCTGTTATGTTAAATAAAAATAAGGTTTCATTCTGCGTCCTCCTTGTGAA 1598
|||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||||
Sbjct 1570 GGGACAGCTAGCTGTTATGTTAAATAAAAACAAGGTTTCATTCTCCGCCCTCGTTGTGAA 1629
Query 1599 ATTTGCTAAAAGAGGAGATGACCACCAATGGGTCTTTGAGTATAAGGAAGCTACCAACTT 1658
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1630 ATTTGCTAAAAGAGGAGATGACCACCAATGGATCTTTGAGTATAAGGAAGCTACCAACTT 1689
Query 1659 TGAAGCTAGGAGGCATTTGGCAATGCTGTTGTTTCCTGACGTGAAAGAAGACTTTGAGGA 1718
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1690 TGAAGCTAGGAGGCATTTGGCAATGCTCTTGTTTCCTGACGTGAAAGAAGACTTTGAGGA 1749
Query 1719 GATGCACGAAATGCTCATTGATCGGTCCAATTTGCTATCAGAATCGTTTGAGTACATAGT 1778
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1750 GATGCACGAAATGCTCATTGATCGGTCCAATTTGCTATCAGAATCATTTGAGTACATAGT 1809
Query 1779 GGGCGCAAGCCCTGAAGCACTTCATGGTGGACTGTTCATGGAATTCAAGAATGAGGAAGC 1838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 GGGCGCAAGCCCTGAAGCACTTCATGGTGGACTGTTCATGGAATTCAAGAATGAGGAAGC 1869
Query 1839 TACAGGTCCTGGTGTTCTACGAGAATGGTTCTATCTGGTATGTCAGGAGATATTCAATCC 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 TACAGGTCCTGGTGTTCTACGAGAATGGTTCTATCTGGTATGTCAGGAGATATTCAATCC 1929
Query 1899 AAAAAATACCCTCTTTCTTCGATCTGCTGATGATTTTAGAAGATTCTCTCCAAACCCAGC 1958
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 AAAAAATACCCTCTTCCTTCGATCTGCTGATGATTTTAGAAGATTCTCTCCAAACCCAGC 1989
Query 1959 ATCCAAGGTGGATCCATTGCATCCTGATTTCTTCGAGTTCACCGGTCGTGTGATTGCCTT 2018
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1990 ATCCAAGGTGGATCCATTGCATCCTGACTTCTTCGAGTTCACGGGTCGTGTGATTGCCTT 2049
Query 2019 AGCTTTGATGCACAAAGTTCAAGTGGGTGTGCTGTTCGATCGTGTTTTCTTCTTACAATT 2078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 AGCTTTGATGCACAAAGTTCAAGTGGGTGTGCTGTTCGATCGTGTTTTCTTCTTACAATT 2109
Query 2079 GGCTGGACTGAAAATTTCTTTGGAAGATATTAAGGACACCGATCGAATTATGTACAATAG 2138
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 GGCCGGACTGAAAATATCTTTGGAAGATATTAAGGACACCGATCGAATTATGTACAATAG 2169
Query 2139 CTGCAAACAGATTCTGGAAATGGATCCAGTGTTTTTCGATTCAAACGCCGGCCTTGGTCT 2198
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 2170 CTGCAAACAGATTCTGGAAATGGATCCAGAGTTTTTCGATTCAAACGCAGGCCTTGGTCT 2229
Query 2199 AACATTCGTGTTGGAAACCGAGGAGCTGGGAAAGAGGGATACAATAGAGCTATGTCCAGG 2258
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2230 AACATTCGTGTTGGAAACCGAGGAGCTGGGAAAGAGGGATACGATAGAGCTATGTCCAGA 2289
Query 2259 CGGGAAATTCAAGGCTGTCAACAGCGAGAACAGGAAACAATATGTCGATCTCCTTATCGA 2318
||||||| |||||||||| |||||| |||||||||||||||| ||||||||||| |||||
Sbjct 2290 CGGGAAACTCAAGGCTGTTAACAGCAAGAACAGGAAACAATACGTCGATCTCCTCATCGA 2349
Query 2319 ACGCCGATTTGCCACACCAATCTTTGAGCAAGTAAAACAATTTTCCCGAGGTTTCACTGA 2378
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2350 ACGCCGATTTGCCACACCAATCTTGGAGCAAGTAAAACAATTTTCTCGAGGTTTCACTGA 2409
Query 2379 TATGCTTTCGGATTCTGTACAGCCCAGATCCTTTTTCAAGAGATTATACCTAGAGGATCT 2438
|||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 2410 TATGCTATCACATTCTGTACCGCCCAGATCATTTTTCAAGAGATTATACCTAGAGGATCT 2469
Query 2439 CGACGGAATGCTTCGAGGAGGAGAAAACCCGATAAGCATAGATGATTGGAAAGCACACAC 2498
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2470 GGATGGAATGCTTCGAGGAGGAGAAAACCCGATAAGCATAGATGATTGGAAAGCGCATAC 2529
Query 2499 AGAATACAACGGATTCAAAGAGACCGATCGCCAAATAGACTGGTTCTGGAAGATTCTGAA 2558
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2530 AGAATACAACGGATTCAAAGAGACTGATCGCCAAATAGACTGGTTCTGGAAGATTCTGAA 2589
Query 2559 GAAAATGACAGAAGAAGAACAGAGGAGTATACTGTTCTTTTGGACATCGAATAAGTTTGT 2618
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 GAAAATGACAGAGGAAGAACAGAGGAGTATACTGTTCTTTTGGACATCGAATAAGTTTGT 2649
Query 2619 ACCGGTGGAAGGGTTTAGAGGATTATCATCAAAGCTTTATATCTACAGATTATATGAAGC 2678
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2650 ACCAGTGGAAGGGTTTAGAGGATTATCATCAAAGCTTTATATCTACAGATTATATGAAGC 2709
Query 2679 TAATGATCGTCTTCCATTGTCTCATACTTGCTTTTACCGTCTCTGTATACCAAGATACCC 2738
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2710 TAATGATCGTCTTCCATTGTCTCATACTTGCTTTTACCGTCTCTGTATACCGAGATACCC 2769
Query 2739 GACGATGACTCTCATGGAACAACGCCTCCGACTCATCGCTCAAGATCATGTCAGCTCCAG 2798
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2770 GACGATTACTCTCATGGAACAACGCCTCCGACTCATCGCTCAAGATCATGTCAGCTCCAG 2829
Query 2799 TTTCGGTAAATGGTGAAATAATTATCAAAGTAATCTCTATCTTC 2842
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2830 TTTCGGTAAATGGTGAAATAATTATCAAAGTAATTTCTATCTTC 2873
Score = 204 bits (110), Expect = 5e-51
Identities = 121/126 (96%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 2838 TCT-TCAATCTGATCTTTAGGGTTCGTAGATTGGTGCTTTTGGTGTATAGATTTAGCGTT 2896
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2902 TCTCTCAGTCTGATCTTTAGGGTTCGTAGATTGGTGCTTTTGGTGTATAGATTTAGTGTT 2961
Query 2897 ATGGTCAAGCCTCTGTTTATGACCGAAAGATTTCTTAACTTCTGTTTTTAACTTATGGAT 2956
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2962 ATGGTCATGCCTCTGTTTATGACCGGAAGATTTCTTAACTTCTGTTTTTAACTTATGGAT 3021
Query 2957 AAATTA 2962
||||||
Sbjct 3022 AAATTA 3027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147239977705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5