BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg490059

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12580.1 | Symbols:  | unknown protein; Has 24 Blast hits to...   331    2e-90


> AT4G12580.1 | Symbols:  | unknown protein; Has 24 Blast hits 
to 18 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa 
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes 
- 15 (source: NCBI BLink). | chr4:7449274-7449779 REVERSE LENGTH=506
Length=506

 Score =  331 bits (179),  Expect = 2e-90
 Identities = 217/236 (92%), Gaps = 0/236 (0%)
 Strand=Plus/Plus

Query  76   atcgattttttACTGCAGGTTGAGAAGATAGTATCAAACACAGAAGAGAAGACATCAACC  135
            ||||||||||| |  ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  116  ATCGATTTTTTCCCACAGGTTGAGAAGATAGTATCAAACACAGAAGAGAAGACAACAACC  175

Query  136  GAGACACCTAAGGAAATCGTTTATGCAGATGATTCAGCCACCGCGGTTGAAGTTGAAATC  195
            ||||| |||||| ||| |||| ||||||||||||||||||| | ||||||||||||||||
Sbjct  176  GAGACGCCTAAGAAAACCGTTCATGCAGATGATTCAGCCACTGTGGTTGAAGTTGAAATC  235

Query  196  AAAGGAGAAGAAGTACTAAAGGTAGAGAATGAAACTGAAAAAACCGAGACAGCTCCGGTT  255
            |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct  236  AAAGGAGAAGAAGTACCAAATGTAGAGAATGAAACTGAAAAAACCGAGATAGCTCCGGTT  295

Query  256  AAAGAGGAGAAACCAGTTGAAATTCCGGCAGCTATGGAGGAGAAAGATGCTAAACC  311
            ||||||||||||||||||| |||| | |||| | ||||||||||||||| ||||||
Sbjct  296  AAAGAGGAGAAACCAGTTGTAATTACAGCAGTTGTGGAGGAGAAAGATGGTAAACC  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5